New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4195041	71 (0.790)	4 (0.050)	4/262	NT	5.7%	coding (1059/1896 nt)	thiC	phosphomethylpyrimidine synthase
	?	NC_000913	= 4195063	64 (0.740)					coding (1037/1896 nt)	thiC	phosphomethylpyrimidine synthase

GCGTCCTGAATAGAACCGGGGCGCAGACCGTCGCCCAGCGACAGCGAAACGTCATAAGCGGCACAGATTTCACAAATTTCGCGGAAGTGTTGATAGAGGAAATTTTCCTGATGATGGGAGAGGCACCATTTCGCCATAATCGAACCGCCGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4194889‑4195041 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcgaAACGCCTGACCGGTATCGTCTCTCGCGGCGGTTCGATTATGGCGAAATGGTGCCTCTCCCATCATCAGGAAAATTTCCTCTATCAACACTTCCGCGAAATTTGTGAAATCTGTGCCGCTTATGACGTTTCGCTGTCGCTGGGCGACGG  <  NC_000913/4195063‑4194916                                                                                                                                                                                                                                                                                                               GCGTCCTGAATAGAACCGGGGCGCAGACCGTCGCCCAGCGACAGCGAAACGTCATAAGCGGCACAGATTTCACAAATTTCGCGGAAGTGTTGATAGAGGAAATTTTCCTGATGATGGGAGAGGCACCATTTCGCCATAATCGAACCGCC                                                                                                                                                          <  2:821716/149‑1           TAGAACCGGGGCGCAGACCGTCGCCCAGCGACAGCGAAACGTCATAAGCGGCACAGATTTCACAAATTTCGCGGAAGTGTTGATAGAGGAAATTTTCCTGATGATGGGAGAGGCACCATTTCGCCATAATCGAACCGCCGCGAAACGCC                                                                                                                                                >  1:893270/1‑149                                                        AAGCGGCACAGATTTCACAAATTTCGCGGAAGTGTTGATAGAGGAAATTTTCCTGATGATGGGAGAGGCACCATTTCGCCATAATCGAACCGCCGCGAAACGCCTGACCGGTATCGTCTCTCGCGGCGGTTCGATTATGGCGAAATGGT                                                                                                   <  2:893270/149‑1                                                                                                             TGATGATGGGAGAGGCACCATTTCGCCATAATCGAACCGCCGCGAAACGCCTGACCGGTATCGTCTCTCGCGGCGGTT                                                                                                                     <  1:510075/78‑1                                                                                                             TGATGATGGGAGAGGCACCATTTCGCCATAATCGAACCGCCGCGAAACGCCTGACCGGTATCGTCTCTCGCGGCGGTT                                                                                                                     >  2:510075/1‑78                                                                                                                                                     CGCGAAACGCCTGACCGGTATCGTCTCTCGCGGCGGTTCGATTATGGCGAAATGGTGCCTCTCCCATCATCAGGAAAATTTCCTCTATCAACACTTCCGCGAAATTTGTGAAATCTGTGCCGCTTATGACGTTTCGCTGTCGCTGGGCG      >  2:1428852/1‑149                                                                                                                                                      GCGAAACGCCTGACCGGTATCGTCTCTCGCGGCGGTTCGATTATGGCGAAATGGTGCCTCTCCCATCATCAGGAAAATTTCCTCTATCAACACTTCCGCGAAATTTGTGAAATCTGTGCCGCTTATGACGTTTCGCTGTCGCTGGGCGA     <  1:1116645/149‑1                                                                                                                                                         AAACGCCTGACCGGTATCGTCTCTCGCGGCGGTTCGATTATGGCGAAATGGTGCCTCTCCCATCATCAGGAAAATTTCCTCTATCAACACTTCCGCGAAATTTGTGAAATCTGTGCCGCTTATGACGTTTCGCTGTCGCTGGGCGACGG  >  2:1222583/1‑149                                                                                                                                                                                                                                                                                                               GCGTCCTGAATAGAACCGGGGCGCAGACCGTCGCCCAGCGACAGCGAAACGTCATAAGCGGCACAGATTTCACAAATTTCGCGGAAGTGTTGATAGAGGAAATTTTCCTGATGATGGGAGAGGCACCATTTCGCCATAATCGAACCGCCGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4194889‑4195041 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcgaAACGCCTGACCGGTATCGTCTCTCGCGGCGGTTCGATTATGGCGAAATGGTGCCTCTCCCATCATCAGGAAAATTTCCTCTATCAACACTTCCGCGAAATTTGTGAAATCTGTGCCGCTTATGACGTTTCGCTGTCGCTGGGCGACGG  <  NC_000913/4195063‑4194916

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.