New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 1221620 | 54 (0.600) | 4 (0.050) | 4/264 | NT | 7.5% | pseudogene (2020/2574 nt) | ycgH | pseudogene; putative ATP‑binding component of a transport system |
? | NC_000913 | = 1221660 | 47 (0.540) | pseudogene (2060/2574 nt) | ycgH | pseudogene; putative ATP‑binding component of a transport system |
GTTTTACCGATAGTGACAGTTGGCGTTTGGGAGTGATGGCTGGTTATGCCCGCGACTACAACTTAACTCATTCCAGCGTGTCGGATTATCGTTCGAAAGGGAGTGTCAGAGGCTATAGCGCAGGGCTGTATGCCACCTGGTTTGCCGATGACATCAGTAAAAAAGGCGCATACATTGACTCCTGGGCGCAATATAGCTGGTTTAAAAACTCGGTGAAAGGGGATGAATTAGCCTATGAATCCTATAGCGCGAAAGGTGCAACCGTCTCGCTGGAAGCGGGTTACGGTTTTGCCCT > NC_000913/1221513‑1221807 | ggtttacCGATAGTGACAGTTCGCGTTTGGGAGTGATGGCTGGTTATGCCCGCGACTACAACTTAACTCATTCCAGCGTGTCGGATTATCGTTCGAAAGGGAGTGTCAGAGGCTATAGCGCAGGGCTGTATGCCACCTGGTTTGCCGAt > 1:1338411‑M2/3‑148 (MQ=255) gTTTTACCGATAGTGACAGTTGGCGTTTGGGAGTGATGGCTGGTTATGCCCGCGACTACAACTTAACTCATTCCAGCGTGTCGGATTATCGTTCGAAAGGGAGTGTCAGAGGCTATAGCGCAGGGCTGTATGCCACCTGGTTTGCCGAt > 1:967579‑M2/1‑148 (MQ=255) tttACCGTTAGTGACAGTTGGCGTTTGGGAGTGATGGCTGGTTATGCCCGCGACTACAACTTAACTCATTCCAGCGTGTCGGATTATCGTTCGAAAGGGAGTGTCAGAGGCTATAGCGCAGGGCTGTATGCCACCTGGTTTGCCGAtga > 2:428280‑M2/1‑146 (MQ=255) aCCGATAGTGACAGTTGGCGTTTGGGAGTGATGGCTGGTTATGCCCGCGACTACAACTTAACTCATTCCAGCGTGTCGGATTATCGTTCGAAAGGGAGTGTCAGAGGCTATAGCGCAGGGCTGTATGCCACCTGGTTTGCCGAttacaa < 2:386257‑M2/149‑7 (MQ=255) gTGACAGTTGGCGTTTGGGAGTGATGGCTGGTTATGCCCGCGACTACAACTTAACTCATTCCAGCGTGTCGGATTATCGTTCGAAAGGGAGTGTCAGAGGCTATAGCGCAGGGCTGTATGCCACCTGGTTTGCCGATGACATCAGTaaa > 1:501768/1‑149 (MQ=255) tGACAGTTGGCGTTTGGGAGTGATGGCTGGTTATGCCCGCGACTACAACTTAACTCATTCCAGCGTGTCGGATTATCGTTCGAAAGGGAGTGTCAGAGGCTATAGCGCAGGGCTCTATGCCACCTGGTTTGCCGATGACATCAGTaaaa > 1:25609/1‑149 (MQ=255) gTTGGCGTTTGGGAGTGATGGCTGGTTATGCCCGCGACTACAACTTAACTCATTCCAGCGTGTCGGATTATCGTTCGAAAGGGAGTGTCAGAGGCTATAGCGCAGGGCTGTATGCCACCTGGTTTGCCGATGACATCAGTAAAAAAGgc < 2:108478/149‑1 (MQ=255) ggCGTTTGTGAGTGATGGCTGGTTATGCCCGCGACTACAACTTAACTCATTCCAGCGTGTCGGATTATCGTTCGAAAGGGAGTGTCAGAGGGTATAGCGCAGGGCTGTATGCCAGCTGGTTTGCCGATGACATCAGTAAAATAGGCGCa < 2:1291302/149‑1 (MQ=255) tGGGAGTGATGGCTGGTTATGCCCGCGACTACAACTTAACTCATTCCAGCGTGTCGGATTATCGTTCGAAAGGGAGTGTCAGAGGCTATAGCGCAGGGCCGTATGCCACCTGTTTTGCCGATGACATCAGTAAAAAAGGCGCATACAtt < 1:1024732/149‑1 (MQ=255) aGTGATGGCTGGTTATGCCCGCGACTACAACTTAACTCATTCCAGCGTGTCGGATTATCGTTCGAAAGGGAGTGTCAGAGGCTATAGCGCAGGGCTGTATGCCACCTGGTTTGCCGATGACATCAGTAAAAAAGGCGCATACATTGACt > 1:1106149/1‑149 (MQ=255) gTGATGGCTGGTTATGCCCGCGACTACAACTTAACTCATTCCAGCGTGTCGGATTTTCGTTCGAAAGGGAGTGTCAGAGGCTATAGCGCAGGGCTGTATGCCCCCTGGTTTGCCGATGACATCAGTAAAAAAGGCGCATACATTGCCTc > 2:1217416/1‑149 (MQ=255) gTGATGGCTGGTTATGCCCGCGACTACAACTTAACTCATTCCAGCGTGTCGGATTATCGTTCGAAAGGGAGTGTCAGAGGCTATAGCGCAGGGCTGTATGCCACCTGGTTTGCCGATGACATCAGTAAAAAAGGCGCATACATTGACTc > 1:64780/1‑149 (MQ=255) gTGAGGGCTGTTTATGCCCGCTACTAAAACTTAACTCATTCCAGCGTGTCGGATTATCGTTCGAAAGGGAGTGTCAGAGGCTATAGCGCAGGGCTGTATGCCACCTGGTTTGCCGATGACATCAGTAATAAAGGCGCATACATTGACTc < 2:406525/149‑1 (MQ=255) tGATGGCTGGTTATGCCCGCGACTACAACTTAACTCATTCCAGCGTGTCGGATTATCGTTCGAAAGGGAGTGTCAGAGGCTATAGCGCAGGGCTGTATGCCACCTGGTTTGCCGATGACATCAGTAAAAAAGGCGCATACATTGACTcc > 1:892161/1‑149 (MQ=255) tGGCTGGTTATGCCCGCGACTACAACTTAACTCATTCCAGCGTGTCGGATTATCGTTCGAAAGGGAGTGTCAGAGGCTATAGCGCAGGGCTGTATGCCACCTGGTTTGCCGATGACATCAGTAAAAAAGGCGCATACATTGACTCCTgg > 2:20220/1‑149 (MQ=255) ttGGTTATGCCCGAGACTTCAACTTAACTCATTCCTGCGTGTCGGATTATCGTTCGAATGGGTGTGTCAGTGTCTATAGCGAAGGGCTGTATGCCACATGGTTTGCCGATGACATCTGTATAAATGGCGCATACATTGACTCCTGTgcg < 2:1321983/148‑1 (MQ=255) ggTTATGCCCGCGACTACAACTTAACTCATTCCAGCGTGTCGGAGTATCGTTCGAAAGGGAGTGTCAGAGGCTATAGCGCAGGGCTGTATGCCACCTGGTTTGCCGATGACATCAGTAAAAAAGGCGCATACATTGACTCCTGGGCGCa < 2:654616/149‑1 (MQ=255) ccGCGACTACAACTTAACTCATTCCAGCGTGTCGGATTATCGTTCGAAAGGGAGTGTCAGAGGCTATAGCGCAGGGCTGTATGCCACCTGGTTTGCCGATGACATCAGTAAAAAAGGCGCATACATTGACTCCTGGGCGCAATATAGCt < 1:575167/149‑1 (MQ=255) aCAACTTAACTCATTCCAGCGTGTCGGATTATCGTTCGAAAGGGAGTGTCAGAGGCTATAGCGCAGGGCTGTATGCCACCTGGTTTGCCGATGACATCAGTAAAAAAGGCGCATACATTGACTCCTGGGCGCAATATAGCTGGTTTaaa < 2:1207716/149‑1 (MQ=255) aaCTTAACTCATTCCAGCGTGTCGGATTATCGTTCGAAAGGGAGTGTCAGAGGCTATAGCGCAGGGCTGTATGCCACCTGGTTTGCCGATGACATCAGTAAAAAAGGCGCATACATTGACTCCTGGGAGCAATATAGCTGGTTTaaaaa > 2:1279837/1‑149 (MQ=255) aCTTAACTCATTCCAGCGTGTCGGATTATCGTTCGAAAGGGAGTGTCAGAGGCTATAGCGCAGGGCTGTATGCCACCTGGTTTGCCGATGACATCAGTAAAAAAGGCGCATACATTGACTCCTGGGCGCAATATAGCTGGTTTAAAAAc > 1:18235/1‑149 (MQ=255) aCTTAACTCATTCCAGCGTGTCGGATTATCGTTCGAAAGGGAGTGTCAGAGGCTATAGCGCAGGGCTGTATGCCACCTGGTTTGCCGATGACATCAGAAAAAAAGGCGCATACATTGACTCCTGGGCGCAATATAGCTGGTTTAAAAAc > 2:823308/1‑149 (MQ=255) cTTAACTCATTCCAGCGTGTCGGATTATCGTTCGAAAGGGAGTGTCAGAGGCTATAGCGCAGGGCTGTATGCCACCTGGTTTGCCGATGACATCAGTAAAAAAGGCGCATACATTGACTCCTGGGCGCAATATTGCTGGTTTAAAAACt > 2:201255/1‑149 (MQ=255) ttAACTCATTCCAGCGTGTCGGATTATCGTTCGAAAGGGAGTGTCAGAGGCTATAGCGCAGGGCTGTTTGCCACCTGGTTTGCCGATGACATCAGTAAAAAAGGCGCATACATTGACTCCTGGGCGCAATATAGCTGGTTTAAAAACTc < 2:155411/149‑1 (MQ=255) ttAACTCATTCCAGCGTGTCGGATTATCGTTCGAAAGGGAGTGTCAGAGGCTATAGCGCAGGGCTGTATGCCACCTGGTTTGCCGATGACATCAGTAAAAAAGGCGCATACATTGCCTCCTGGGCGCAATATAGCTGGTTTAAAAACTc > 2:713963/1‑149 (MQ=255) ttAACTCATTCCAGCGTGTCGGATTATCGTTCGAAAGGGAGTGTCAGAGGCTATAGCGCAGGGCTGTATGCCACCTGGTTTGCCGATGACATCAGTAAAAAAGGCGCATACATTGACTCCTGGGCGCAATATAGCTGGTTTAAAAACTc < 2:892161/149‑1 (MQ=255) tAACTCATTCCAGCGTGTCGGATTATCGTTCGAAAGGGAGTGTCAGAGGCTATAGCGCAGGGCTGTATGCCACCTGGTTTGCCGATGACATCAGTAAAAAAGGCGCATACATTGACTCCTGGGCGCAATATAGCt < 2:108286/135‑1 (MQ=255) tAACTCATTCCAGCGTGTCGGATTATCGTTCGAAAGGGAGTGTCAGAGGCTATAGCGCAGGGCTGTATGCCACCTGGTTTGCCGATGACATCAGTAAAAAAGGCGCATACATTGACTCCTGGGCGCAATATAGCt > 1:108286/1‑135 (MQ=255) tAACTCATTCCAGCGTGTCGGATTATCGTGCGAAAGGGAGTGTCAGCGGCTATAGCGCAGGGCTGTATGCCACCTGGTTTGCCGATGACATCAGTAAAAAAGGCGCATACATTGACTCCTGGGCGCAATATAGCTGGTTTAAAAACTCg < 1:971195/149‑1 (MQ=255) aTTCCAGCGTGTCGGATTATCGTTCGAAAGGGAGTGTCAGAGGCTATAGCGCAGGGCTGTATGCCACCTGGTTTGCCGATGACATCAGTAAAAAAGGCGCATACATTGACTCCTGGGCGCAATATAGCTGGTTTAAAAACTCGGTGaaa < 1:683198/149‑1 (MQ=255) gtCTGATTATCGTTCGAAAGGGAGTGTCAGAGGCTATAGCGCAGGGCTGTATGCCACCTGGTTTGCCGATGACATCAGTAAAAAAGGCGCATACATTGACTCCTGGGCGCAATATAGCTGGTTTAAAAACTCGGTGAAAGGGGATGAAt < 2:758729/149‑1 (MQ=255) gtCGGATTATCGTTCGAAAGGGAGTGTCAGAGGCTATAGCGCAGGGCTGTATGCCACCTGGTTTGCCGATGACATCAGTAAAAAAGGCGCATACATTGACTCCTGGGCGCAATATAGCTGGTTTAAAAACTCGGTGAAAGGGGATGAAt > 1:777900/1‑149 (MQ=255) tCGGATTATCGTTCGAAAGGGAGTGTCAGAGGCTATAGCGCAGGGCTGTATGCCACCTGGTTTGCCGATGACATCAGTAAAAAAGGCGCATACATTGACTCCTGGGCGCAATATAGCTGGTTTAAAAACTCGGTGAAAGGGGATGAAtt > 2:361154/1‑149 (MQ=255) tCGGATTATCGTTCGAAAGGGAGTGTCAGAGGCTATAGCGCAGGGCTGTATGCCACCTGGTTTGCCGATGACATCAGTAAAAAAGGCGCATACATTGACTCCTGGGCGCAATATAGCTGGTTTAAAAACTCGGTGAAAGGGGATGAAtt > 2:355488/1‑149 (MQ=255) gATTATCGTTCGAAAGGGAGTGTCAGAGGCTATAGCGCAGGGCTGTATGCCACCTGGTTTGCCGATGACATCAGTAAAAAAGGCGCATACATTGACTCCTGGGCGCAATATAGCTGGTTTAAAAACTCGGTGAAAGGGGATGAATTAGc < 2:501768/149‑1 (MQ=255) gATTATCGTTCGAAAGGGAGTGTCAGAGGCTATAGCGCAGGGCTGTATGCCACCTGGTTTGCCGATGACATCAGTAAAAAAGGCGCATACATTGACTCCTGGGCGCAATATAGCTGGTTTAAAAACTCGGTGAAAGGGGATGAATTAGc < 2:660680/149‑1 (MQ=255) ttCGTTCGAATGGTAGTGTCAGAGGCTATAGCGCAGGGCTGTATGCCACCTGGTTTGCCGATGACATCAGTAAAAAAGGCGCATACATTGACTCCTGGGCGCAATATAGCTGGTTTAAAAACTCGGTGAAAGGGGATGAATTAGCCTAt < 2:1321691/148‑1 (MQ=255) aTCGTTCGAAAGGGAGTGTCAGAGGCTATAGCGCAGGGCTGTATGCCACCTGGTTTGCCGATGACATCAGTAAAAAAGGCGCATACATTGACTCCTGGGCGCAATATAGCTGGTTTAAAAACTCGGTGAAAGGGGATGAATTAGCCTAt < 1:1564646/149‑1 (MQ=255) ttCGAAAGGGAGTGTCAGAGGCTATAGCGCAGGGCTGTATGCCACCTGGTTTGCCGAtgacactccctttcgaacgataatccgacacgctggaatgagttaagttgtagtcgcgggcataaccagccatcactcccaaccgccaactg < 1:602036‑M2/149‑93 (MQ=255) ttCGAAAGGGAGTGTCAGAGGCTATAGCGCAGGGCTGTATGCCACCTGGTTTGCCGATGACATCAGTAAAAAAGGCGCATACATTGACTCCTGGGCGCAATATAGCTGGTTTAAAAACTCGGTGAAAGGGGATGAATTAGCCTATGAAt > 1:1062845/1‑149 (MQ=255) tCGAAAGGGAGTGTCAGACGCTATAGCGCAGGGCTGTATGCCACCTGGTTTGCCGATGACATCAGTAAAAAAGGCGCATACATTGACTCCTGGGCGCAATATAGCTGGTTTAAAAACTCGGTGAAAGGGGATGAATTAGCCTATGAATc < 1:58004/149‑1 (MQ=255) aaaGGGAGTGTCAGAGGCTATAGCGCAGGGCTGTATGCCACCTGGTTTGCCGAtgacactccctttcgaacgataatccgacacgctggaatgagttaagttgtagtcgcgggcataaccagccatcactcccaaacgccaactgtcac < 2:1526415‑M2/149‑97 (MQ=255) aaGGGAGTGTCAGAGGCTATAGCGCAGGGCTGTATGCCACCTGGTTTGCCGAtgacactccctttcgaacgataatccgacacgctggaatgagttaagttgtagtcgcgggcataaccagccatcactcccaaacgccaactgtcact < 1:457120‑M2/149‑98 (MQ=255) gAGTGTCAGAGGCTATAGCGCAGGGCTGTATGCCACCTGGTTTGCCGATGACATCAGTAAAAAAGGCGCATACATTGACTCCTGGGCGCAATATAGCTGGTTTAAAAACTCGGTGAAAGGGGATGAATTAGCCTATGAATCCTATAgcg > 2:821218/1‑149 (MQ=255) gAGTGTCAGAGGCTATAGCGCAGGGCTGTATGCCACCTGGTTTGCCGATGACATCAGTAAAAAAGGCGCATACATTGACTCCTGGGCGCAATATAGCTGGTTTAAAAACTCGGTGAAAGGGGATGAATTAGCCTATGAATCCTATAgcg > 2:452292/1‑149 (MQ=255) gAGTGTCAGAGGCTATAGCGCAGGGCTGTATGCCACCTGGTTTGCCGATGACATCAGTAAAAAAGGCGCATACATTGACTCCTGGGCGCAATATAGCTGGTTTAAAAACTCGGTGAAAGGGGATGAATTAGCCTATGAATCCTATAgcg > 1:948706/1‑149 (MQ=255) tCAGAGGCTATAGCGCAGGGCTGTATGCCACCTGGTTTGCCGAtgacactccctttcgaacgataatccgacacgctggaatgagttaagttgtagtcgcgggcataaccagccatcactcccaaacgccaactgtcactatcggtaaa < 2:616938‑M2/149‑107 (MQ=255) gagGCTATAGCGCTGGGCTGAATGCCACCTGGTTTGCCGATGACATCAGTAAAAAAGGCGCATACATTGACTCCTGGGCGCAATATAGCTGGTTTAAAAACTCGGTGAAAGGGGATGAATTAGCCTATGAATCCTATAGCGCGAAAGGt < 2:572814/149‑1 (MQ=255) gagGCTATAGCGCAGGGCTGTATGCCACCTGGTTTGCCGATGACATCAGTAAAAAAGGCGCATACATTGAATCCTGGGCGCAATATAGCTGGTTTAAAAACTCGGTGAAAGGGGATGAATTAGCCTATGAATCCTATAGCGCGAAAGGt > 2:1456133/1‑149 (MQ=255) ggCTATAGCGCAGGGCTGTATGCCACCTGGTTTGCCGATGACATCAGTAAAAAAGGCGCATACATTGACTCCTGGGCGCAATATAGCTGGTTTAAAAACTCGGTGAAAGGGGATGAATTAGCCTATGAATCCTATAGCGCGAAAGGTGc > 1:82835/1‑149 (MQ=255) gCTATAGCGCAGGGCTGTATGCCACCTGGTTTGCCGATGACATCAGTAAAAAAGGCGCATACATTGACTCCTGGGCGCAATATAGCTGGTTTAAAAACTCGGAGAAAGGGGATGAATTAGCCTATGAATCCTATAGCGCGAAAGGTGCa > 2:496257/1‑149 (MQ=255) ataGCGCAGGGCTGTATGCCACCTGGTTTGCCGATGACCTCAGTAAAAAAGGCGCATACATTGACTCCTGGGCGCAATATAGCTGGTTTAAACCCTCGGTGAAAGGGGATGAATAAGCCTATGAATCCTATAGCGCGAAAGGTGCAAca > 2:297336/1‑148 (MQ=255) gCTGTATGCCACCTGGTTTGCCGATGACATCAGTAAAAAAGGCGCATACATTGACTCCTGGGCGCAATATAGCTGGTTTAAAAACTCGGTGAAAGGGGATGAATTAGCCTATGAATCCTATAGCGCGAAAGGTGCAACCGTCTCGCTgg > 2:398988/1‑149 (MQ=255) tGCCACCTGGTTTGCCGATGACATCAGTAAAAAAGGCGCATACATTGACTCCTGGGCGCAATATAGCTGGTTTAAAAACTCGGTGAAAGGGGATGAATTAGCCTATGAATCCTATAGCGCGAAAGGTGCAACCGTCTCGCTGGAAGCgg < 2:1106149/149‑1 (MQ=255) tGCCACCTGGATTGCCGATGACATCAGTAAAAAAGGCGCATACATTGACTCCTGGGCGCAATATAGCTGGTTTAAAAACTCGGTGAAAGGGGAGGAATTAGCCTATGAATCCTATAGCGCGAAAGGTGCAACCGTCTCGCTGGAAGCgg < 1:20220/149‑1 (MQ=255) ccGATGACATCAGTAAAAAAGGCGCATACATTGACTCCTGGGCGCAATATAGCTGGTTTAAAAACTCGGTGAAAGGGGATGAATTAGCCTATGAATCCTATAGCGCGAAAGGTGCAACCGTCTCGCTGGAAGCGGGTTACGGTTTTGcc > 1:1489983/1‑149 (MQ=255) cGATGACATCATTAAAAAAGGCGCATACATTGAAACCTGGGCGCAATATAGCTGGTTTAAAAACTCGGTGAAAGGGGATGAATTAGCCTATGAATCCTATAGCGCGAAAGGTGCAACCGTCTCGCTGGAAGCGGGTTACGGTTTTGccc < 2:64780/149‑1 (MQ=255) gATGACATCAGTAAAAAAGGCGCATACATTGACTCCTGGGCGCAATATAGCTGGTTTAAAAACTCGGTGAAAGGGGATGAATTAGCCTATGAATCCTATAGCGCGAAAGGTGCAACCGTCTCGCTGGAAGCGGGTTACGGTTTTGCCCt < 1:821218/149‑1 (MQ=255) gATGACATCAGTAAAAAACGCGCATACATTGACTCCTGGGCGCAATATAGCTGGTTTAAAAACTCGGTGAAAGGGGATGAATTAGCCTATGAATCCTAAAGCGCGAAAGGTGCAACCGTCTCGCTGGAAGCGGGTTACGGTTTTGCCCt < 2:938556/149‑1 (MQ=255) | GTTTTACCGATAGTGACAGTTGGCGTTTGGGAGTGATGGCTGGTTATGCCCGCGACTACAACTTAACTCATTCCAGCGTGTCGGATTATCGTTCGAAAGGGAGTGTCAGAGGCTATAGCGCAGGGCTGTATGCCACCTGGTTTGCCGATGACATCAGTAAAAAAGGCGCATACATTGACTCCTGGGCGCAATATAGCTGGTTTAAAAACTCGGTGAAAGGGGATGAATTAGCCTATGAATCCTATAGCGCGAAAGGTGCAACCGTCTCGCTGGAAGCGGGTTACGGTTTTGCCCT > NC_000913/1221513‑1221807 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |