New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1963682	56 (0.620)	3 (0.030)	3/262	NT	5.4%	coding (1369/2079 nt)	flhA	putative flagellar export pore protein
	?	NC_000913	= 1963710	52 (0.600)					coding (1341/2079 nt)	flhA	putative flagellar export pore protein

GAGGTGGTTAAGATGCGTTGCTACCACCGTGCTGGCCTCAACCACTGTGTACCCCTGAATCTGCGCCTGTTCTTTTAGCGCACTTTCAATCCAGATAGCATTCAGGCCAAATGCCGGATCGACGGTCGCCTCACCAGGTAACGTCCCGGCAGCGGTTCCAGGGTTAATCGCCAGCCAGCGCCCCGGATAAGCATCACCACTGCCAATCTCCACGCCTTTCATCAAAATGCGATAGCGGGCAGGTTGCAGATCCATATTGTCGCGAATGTGCACCACTGGCGGCAGAAATCCC  >  NC_000913/1963566‑1963857                                                                                                                                                 |                                                                                                                                                    gAGGTGGTTAAGATGCGTTGCTACCACCGTGCTGGCCTCAACCACTGTGTACCCCTGAATCTGCGCCTGTTCTTTTAGCGCACTTTCAATCCAGCTAGCATTCAGGCCAAATGCCGGATCGACGGTCGCCTCACCAGGTAACGTCccgg                                                                                                                                                 <  1:1029340‑M2/149‑5 (MQ=255)    gtggtTAAGATGCGTTGCTACCACCGTGCTGGCCTCAACCACTGTGTACCCCTGAATCTGCGCCTGTTCTTTTAGCGCACTTTCAATCCAGATAGCATTCAGGCCAAATTCCGGATCGACGTTCGCCTCACCAGGTAACGTCCCGGCAg                                                                                                                                              <  1:114906/149‑1 (MQ=255)    gtggtTAAGATGCGTTGCTACCACCGTGCTGGCCTCAACCACTGTGTACCCCTGAATCTGCGCCTGTTCTTTTAGCGCACTTTCAATCCAGATAGCATTCAGGCCAAATGCCGGATCGACGGTCGCCTCACCAGGTAACGTCCCGGCAg                                                                                                                                              >  2:594542/1‑149 (MQ=255)       gtTAAGATGCGTTGCTACCACCGTGCTGGCCTCAACCACTGTGTACCCCTGAATCTGCGCCTGTTCTTTTAGCGCCCTTTCAATCCAGATAGCATTCAGGCCAAATGCCGGATCGACGGTCGCCTCACCAGGTAACGTCCCGGCAGCgg                                                                                                                                           >  1:561230/1‑149 (MQ=255)       gtTAAGATGCGTTGCTACCACCGTGCTGGCCTCAACCACTGTGTACCCCTGAATCTGCGCCTGTTCTTTTAGCGCACTTTCAATCCAGATAGCATTCAGGCCAAATGCCGGATCGACGGTCGCCTCACCAGGTAACGTCCCGGCAGCgg                                                                                                                                           >  2:1267422/1‑149 (MQ=255)       gtTAAGATGCGTTGCTACCACCGTGCTGGCCTCAACCACTGTGTACCCCTGAATCTGCGCCTGTTCTTTTAGCGCACTTACAATCCAGATAGCATTCAGGCCAAATGCCGGATCGACGGTCGCCTCACCAGGTAACGTCCCGGCAGCgg                                                                                                                                           >  1:365583/1‑149 (MQ=255)          aaGATGCGTTGCTACCACCGTGCTGGCCTCAACCACTGTGTACCCCTGAATCTGCGCCTGTTCTTTTAGCGCACTTTCAATCCAGATAGCATTCAGGCCAAATGCCGGATCGACGGTCGCCTGACCAGGTTACGTCCCGGCAGCGGTTc                                                                                                                                        >  1:226222/1‑149 (MQ=255)             aTGCGTTGCTACCACCGTGCTGGCCTCAACCACTGTGTACCCCTGAATCTGCGCCTGTTCTTTTAGCGCACTTTCAATCCAGATAGCATTCAGGCCAAATGCCGGATCGACGGTGGCCTCACCATGTAACGTCCCGGCAGCGGTTCCAg                                                                                                                                     <  1:1135725/149‑1 (MQ=255)             aTGCGTTGCTACCACCGTGCTGGCCTCAACCACTGTGTACCCCTGAATCTGCGCCTGTTCTTTTAGCGCACTTTCAATCCAGATAGCATTCAGGCCAAATGCCGGATCGACGGTCGCCTCACCAGGTAACGTCCCGGCAGCGGTTCCAg                                                                                                                                     <  1:1230565/149‑1 (MQ=255)             aTGCGTTGCTACCACCGTGCTGGCCTCAACCACTGTGTACCCCTGAATCTGCGCCTGTTCTTTTAGCGCACTTTCAATCCAGATAGCATTCAGGCCAAATGCCGGATCGACGGTCGCCTCACCAGGTAACGTCCCGGCAGCGGTTCCAg                                                                                                                                     >  2:1129297/1‑149 (MQ=255)               gCGTTGCTACCACCGTGCTGGCCTCAACCACTGTGTACCCCTGAATCTGCGCCTGTTCTTTTAGCGCACTTTCAATCCAGATAGCATTCAGGCCAAATGCCGGATCGACGGTCGCCTCACCAGGTAACGTCCCGGCAGCGGTTCCAggg                                                                                                                                   <  2:19897/149‑1 (MQ=255)                 gTTGCTACCACCGTGCTGGCCTCAACCACTGTGTACCCCTGAATCTGCGCCTGTTCTTTTAGCGCACTTTCAATCCAGATAGCATTCAGGCCAAATGCCGGATCGACGGTCGCCTCACCAGGTAACGTCCCGGCAGCGGTTCCAGGGtt                                                                                                                                 >  1:1327983/1‑149 (MQ=255)                    gCTACCACCGTGCTGGCCTCAACCACTGTGTACCCCTGAATCTGCGCCTGTTCTTTTAGCGCACTTTCAATCCAGATAGCATTCAGGCCAAATGCCGGATCGACGGTCGCCTCACCAGGTAACGTCCCGGCAGCGGTTCCAGGGTTAAt                                                                                                                              <  1:842606/149‑1 (MQ=255)                      tACCACCGTGCTGGCCTCAACCACTGTGTACCCCTGAATCTGCGCCTGTTCTTTTAGCGCACTTTCAATCCAGATAGCATTCAGGCCAAATGCCGGATCGACGGTCGCCTCACCAGGTAACGTCCCGGCAGCGGTTCCAGGGTTAATCg                                                                                                                            >  1:1350763/1‑149 (MQ=255)                         caccGTGCTGGCCTCAACCACTGTGTACCCCTGAATCTGCGCCTGTTCTTTTAGCGCACTTTCAATCCAGATAGCATTCAGGCCAAATGCCGGATCGACGGTCGCCTCACCAGGTAACGTCCCGGCAGCGGTTCCAGGGTTAATCgcca                                                                                                                         >  1:44826/1‑149 (MQ=255)                         caccGTGCTGGCCTCAACCACTGTGTACCCCTGAATCTGCGCCTGTTCTTTTAGCGCACTTTCAATCCAGATAGCATTCAGGCCAAATGCCGGATCGACGGTCGCCTCACCAGGTAACGTCCCGGCAGCGGTTCCAGGGTTAATCgcca                                                                                                                         >  2:55691/1‑149 (MQ=255)                                   gCCTCAACCACTGTGTACCCCTGAATCTGCGCCTGTTCTTTTAGCGCACTTTCAATCCAGATAGCATTCAGGCCAAATGCCGGATCGACGGTCGCCTCACCACGTAACGTCCCGGCAGCGGTTCCAGGGTTAATCGCCAGCCAGCGccc                                                                                                               >  2:1161333/1‑149 (MQ=255)                                    ccTCAACCACTGTGTACCCCTGAATCTGCGCCTGTTCTTTTAGCGCACTTTCAATCCAGATAGCATTCCGGCCAAATGCCGGATCGACGGTCGCCTCACCAGGTTACGTCCCGGCAGCGGTTCCAGGGTTAATCGCCAGCCAGCGcccc                                                                                                              >  1:879914/1‑149 (MQ=255)                                        aaCCACTGTGTACCCCTGAATCTGCGCCTGTTCTTTTAGCGCACTTTCAATCCAGATAGCATTCAGGCCAAATGCCGGATCGACGGTCGCCTCACCAGGTAACGTCCCGGCAGCGGTTCCAGGGTTAATCGCCAGCCAGCGCCCCGGAt                                                                                                          >  1:707118/1‑149 (MQ=255)                                            aCTGTGTACCCCTGACTCTGCGCCTGAGCTTTTAGCGCACTTTCAATCCAGATAGCCTTCAGGCCAAATGCCGGATCGACGGTCGCCTCACCAGGTAACGTCCCGGCAGCGGTTCCAGGGTTAATCGCCAGCCAGCGCCCCGGATAAGc                                                                                                      <  1:296812/149‑1 (MQ=255)                                                tgtACCCCTGAATCTGCGCCTGTTCTTTTAGCGCACTTTCAATCCAGATAGCATTCAGGCCAAATGCCGGATCGACGGTCGCCTCACCAGGTAACGTCCCGGCAGCGGTTCCAGGGTTAATCGCCAGCCAGCGCCCCGGATAAGCATca                                                                                                  >  2:868247/1‑149 (MQ=255)                                                      ccTGAATCTGCGCCTGTTCTTTTAGCGCACTTTCAATCCAGATAGCATTCAGGCCAAATGCCGGATCGACGGTCGCCTCACCAGGTAACGTCCCGGCAGCGGTTCCAGGGTTAATCGACAGCCAGCGCCCCGGATAAGCATCACCACTg                                                                                            >  1:1248088/1‑149 (MQ=255)                                                           aTCTGCGCCTGTTCTTTTAGCGCACTTTCAATCCAGATAGCATTAAGGCCAAATGCCGGATCGACGGTCGCCTCACCAGGTAACGTCCCGGCAGCGGTTCCAGGGTTAATCGCCAGCCAGCGCCCCGGATAAGCATCACCACTGCCata                                                                                       >  1:1222075/1‑147 (MQ=255)                                                             cTGCGCCTGTGCTTTTAGCCGACTATCAATCGAGATAGCATTCAGGCCATATGCCGGATCGACGGTCGCGGCACCAGGTAACCTCCCGGCAGCCGAGCCAGGGATAATCGCCAGCCATCGCCCCTGATAAGCATCACCACTGCCTAtct                                                                                     <  1:263093/149‑1 (MQ=255)                                                              tGCGCCTGTTCTTTTAGCGCACTTTCAATCCAGATAGCATTCAGGCCAAATGCCGGATCGACGGTCGCCTCACCAGGTAACGTCCCGGCAGCGGTTCCAGGGTTAATCGCCAGCCAGCGCCCCGGATAAGCATCACCACTGCCAAtctc                                                                                    <  1:458823/149‑1 (MQ=255)                                                              tGCGCCTGTTCTTTTAGCGCACTTTCAATCCAGATAGCATTCAGGCCAAATGCCGGATCGACGGTCGCCTCACCAGGTAACGTCCCGGCAGCGGTTCCAGGGTTAATCGCCAGCCAGCGCCCCGGATAAGCATCACCACTGCCAAtctc                                                                                    <  1:594542/149‑1 (MQ=255)                                                              tGCGCCTGTTCTTTTAGCGCACTTTCAATCCAGATAGCATTCAGGCCAAATGCCGGATCGACGGTCGCCTCACCAGGTAACGACCCGGCAGCGGTTCCAGGGTTAAACCCCAGACAGCGCCCCGGATAAGCCTCACCCATGCCAAtctc                                                                                    >  2:263093/1‑149 (MQ=255)                                                                cgcCTGTTCTTTTAGCGCACTTTCAATCCAGATAGCATTCAGGCCAAATGCCGGATCGACGCTCGCCTCACCAGGTAACGTCCCGGCAGCGGTTCCAGGGTTAATCGCCAGCCAGCGCCCCGGATAAGCATCACCACTGCCAATCTCCa                                                                                  >  2:619971/1‑149 (MQ=255)                                                                cgcCTGATCATTTAGCGCACTTTCAATCCAGATAGCATTCAGGCCAAATGCCGGATCGACGGTCGCCTCACCAGGTAACGTCCCGGCAGCGGTTCCAGGGTTAATCGCCAGCCAGCGCCCCGGATAAGCATCACCACTGCCAATCTCCa                                                                                  <  1:773287/149‑1 (MQ=255)                                                                 gcCTGTTCTTTTAGCGCACTTTCAATCCAGATAGCATTCAGGCCAAATGCCGGATCGACGGTCGCCTCACCAGGTAACGTCCCGGCAGCGGTTCCAGGGTTAATCGCCAGCCAGCGCCCCGGATAAGCATCACCACTGCCAATCTCCAc                                                                                 <  1:562831/149‑1 (MQ=255)                                                                 gcCTGTTCTTTTAGCGCACTTTCAATCCAGATAGCATTCAGGCCAAATGCCGGATCGACGGTCGCCTCACCAGGTAACGTCCCGGCAGCGGTTCCAGGGTTAATCGCCAGCCAGCGCCCCGGATAAGCATCACCACTGCCAATCTCCAc                                                                                 <  2:92536/149‑1 (MQ=255)                                                                   cTGTTCTTTTAGCGCACTTTCAATCCAGATAGCATTCAGGCCAAATGCCGGATCGACGGTCGCCTCACCAGGTAACGTCCCGGCAGCGGTTCCAGGGTTAATCGCCAGCCAGCGCCCCGGATAAGCATCACCACTGCCAATCTCCACGc                                                                               >  2:538623/1‑149 (MQ=255)                                                                    tGTTCTTTTAGCGCACTTTCAATCCAGATAGCATTCAGGCCAAATGCCGGATCGACGGTCGCCTCACCAGGTAACGTCCCGGCAGCGGTTCCAGGGTTAATCGACAGCCAGCGCCCCGGATAAGCATCACCACTGCCAATCTCCACGcc                                                                              >  1:1171989/1‑149 (MQ=255)                                                                     gTTCTTTTAGCGCACTTTCAATCCAGATAGCATTCAGGACAAATGCCGGATCGACGGTCGCCTCACCAGGTAACGTCCCGTCAGCGGTTCCAGGGTTAATCGCCAGCCAGCGCCCCGGATAAGCATCACCCCTGCCAATCTCCCCGCCt                                                                             >  1:85768/1‑149 (MQ=255)                                                                         ttttAGCGCACTTTCAATCCAGATAGCATTCAGGCCAAATGCCGGATCGACGGTCGCCTCACCAGGTAACGTCCCGGCAGCGGTTCCAGGGTTAATCGCCAGCCAGCGCCCCGGATAAGCATCACCACTGCCAATCTCCACGCCTTtca                                                                         >  2:363805/1‑149 (MQ=255)                                                                          tttAGCGCACTTTCAATCCAGATAGCATTCAGGCCAAATGCCGGATCGACGGTCGCCTCACCAGGTAACGTCCCGGCAGCGGTTCCAGGGTTAATCGCCAGCCAGCGCCCCGGATAAGCATCACCACTGCCAATCTCCACGCCTTtcat                                                                        <  2:633764/149‑1 (MQ=255)                                                                           ttAGCGCACTTTCAATCCAGATAGCATTCAGGCCAAATGCCGGATCGACGGTCGCCTCACCAGGTAACGTCCCGGCAGCGGTTCCAGGGTTAATCGCCAGCCAGCGCCCCGGATAAGCATCACCACTGCCAATCTCCACGCCTTtcatc                                                                       <  1:55691/149‑1 (MQ=255)                                                                                gcACTTTCAATCCAGATAGCATTCAGGCCAAATGCCGGATCGACGGTCGCCTCACCAGGTAACGTCCCGGCAGCGGTTCCAGGGTTAATCGCCAGCCAGCGCCCCGGATAAGCATCACCACTGCCAATCTCCACGCCTTTCATCAAAAt                                                                  >  2:1130779/1‑149 (MQ=255)                                                                                    tttCAATCCAGATAGCATTCAGGCCAAATGCCGGATCGACGGTCGCCTCACCAGGTACCGTCCCGGCAGCGGTTCCAGGGTTAATCGCCAGCCAGCGACCCGGATACGCATCACCACTGCCAATCTCCACGCCTTTCATCAAAATGCgg                                                              >  1:985551/1‑148 (MQ=255)                                                                                    tttCAATCCAGATAGCATTCAGGCCAAATGCCGGATCGACGGTCGCCTCACCAGGTAACGTCCCGGCAGCGGTTCCAGGGTTAATCGCCAGCCAGCGCCCCGGATAAGCATCACCACTGCCAATCTCCACGCCTTTCATCAAAATGCGa                                                              >  2:1594037/1‑149 (MQ=255)                                                                                      tCAATCCAGATAGCATTCAGGCCAAATGCCGGATCGACGGTCGCCTCACCAGGTAACGTCCCGGCAGCGGTTCCAGGGTTAATCGCCAGCCAGCGCCCCGGATAAGCATCACCACTGCCAATCTCCACGCCTTTCATCAAAATGCGAtt                                                            <  2:1029340/149‑2 (MQ=255)                                                                                        aaTCCAGATAGCATTCAGGCCAAATGCCGGATCGACGGTCGCCTCACCAGGTAACGTCCCGGCAGCGGTTCCAGGGTTAATCGCCAGCCAGCGCCCCGGATAAGCATCACCACTGCCAATCTCCACGCCTTTCATCAAAATGCGATAGc                                                          <  1:589956/149‑1 (MQ=255)                                                                                          tCCAGATAGCATTCAGGCCAAATGCCGGATCGACGGTCGCCTCACCAGGTAACGTCCCGGCAGCGGTTCCAGGGTTAATCGCCAGCCAGCGCCCCGGATAAGCATTACCACTGCCAATCTCCACGCCTTTCATCAAAATGCGATAGCgg                                                        >  1:1021387/1‑149 (MQ=255)                                                                                          tCCAGATAGCATTCAGGCCAAATGCCGGATCGACGGTCGCCTCACCAGGTAACGTCCCGGCAGCGGTTCCAGGGTTAATCGCCAGCCAGCGCCCCGGATAAGCATCACCACTGCCAATCTCCACGCCTTTCATCAAAATGCGATAGCgg                                                        >  2:243278/1‑149 (MQ=255)                                                                                               aTAGCATTCAGGCCAAATGCCGGATCGACGGTCGCCTCACCAGGTAACGTCccggcatttggcctgaatgctatctggattgaaagtgcgctaaaagagcaggcgcagattcaggggtacacagtggttgaggcccgcacggtggtagc                                                   <  2:441573‑M2/149‑99 (MQ=255)                                                                                               aTAGCATTCAGGCCAAATGCCGGATCGACGGTCGCCTCACCAGGTAACGTCCCGGCAGCGGTTCCAGGGTTAATCGCCAGCCAGCGCCCCGGATAAGCATCACCACTGCCAATCTCCACGCCTTTCATCAAAATGCGATAGCGGGCAgg                                                   <  1:1129297/149‑1 (MQ=255)                                                                                                tAGCATTCAGGCCAAATGCCGGATCGACGGTCGCCTCACCAGGTAACGTCCCGGCAGCGGTTCCAGGGTTAATCGCCAGCCAGCGCCCCGGATAAGCATCACCACTGCCAATCTCCACGCCTTTCATCAAAATGCGATAGCGGGCAGGt                                                  <  2:901501/149‑1 (MQ=255)                                                                                                 aGCATTCAGGCCAAATGCCGGATCGACGGTCGCCTCACCAGGTAACGTCCCGGCAGCGGTTCCAGGGTTAATCGCCAGCCAGCGCCCCGGATAAGCATCACCACTGCCAATCTCCACGCCTTTCATCAAAATGCGATAGCGGGCAGGtt                                                 >  2:610080/1‑149 (MQ=255)                                                                                                   cATTCAGGCCAAATGCCGGATCGACGGTCGCCTCACCAGGTAACGTCCCGGCAGCGGTTCCAGGGTTAATCGCCAGCCAGCGCCCCGGATAAGCATCACCACTGCCAATCTCCACGCCTTTCATCAAAATGAGATAGCGGGAAGGTTGc                                               >  2:103566/1‑149 (MQ=255)                                                                                                        aGGCCAAATGCCGGATCGACGGTCGCCTCACCAGGTAACGTCccggcatttggcctgaatgctatctggattgaaagtgcgctaaaagaacaggcgcagattcaggggttcacagtggttgaggccagcacggtggtagcaacgcatct                                          <  2:810547‑M2/149‑108 (MQ=255)                                                                                                        aGGCCAAATGCCGGATCGACGGTCGCCTCACCAGGTAACGTCCCGGCAGCGGTTCCAGGGTTAATCGCCAGCCAGCGCCCCGGATAAGCATCACCACTGCCAATCTCCACGCCTTTCATCAAAATGCGATAGCGGGCAGGTTGCAGATc                                          <  2:953170/149‑1 (MQ=255)                                                                                                          gCCAAATGCCGGATCGACGGTCGCCTCACCAGGTAACGTCCCGGCAGCGGTTCCAGGGTTAATCGCCAGCCAGCGCCCCGGATAAGCATCACCACTGCCAATCTCCACGCCTTTCATCAAAATGCGATAGCGGGCAGGTTGCAGATCCa                                        >  1:377086/1‑149 (MQ=255)                                                                                                            cAAATGCCGGATCGACGGTCGCCTCACCAGGTAACGTCccggcatttggcctgaatgctatctggattgaaagtgcgctaaaagaacaggcgcagattcaggggtacacagtggttgaggccagcacggtggtagcaacgcatcttaac                                      <  1:470298‑M2/149‑112 (MQ=255)                                                                                                            cAAATGCCGGATCGACGGTCGCCTCACCAGGTAACGTCCCGGCAGCGGTTCCAGGGTTAATCGCCAGCCAGCGCCCCGGATAAGCATCACCACTGCCAATCTCCACGCCTTTCATCAAAATGCGATAGCGGGCAGGTTGCAGATCCata                                      <  2:726689/149‑1 (MQ=255)                                                                                                                   cGGATCGACGGTCGCCTCACCAGGTAACGTCCCGGCAGCGGTTCCAGGGTTAATCGCCAGCCAGCGCCCCGGATAAGCATCACCACTGCCAATCTCCACGCCTTTCATCAAAATGCGATAGCGGGCAGGTTGCAGATCCATATTGTcgc                               <  1:1267422/149‑1 (MQ=255)                                                                                                                          aCGGTCGCCTCACCAGGTAACGTCCCGGCAGCGGTTCCAGGGTTAATCGCCAGCCAGCGCCCCGGATAAGCATCACCACTGCCAATCTCCACGCCTTTCATCAAAATGCGATAGCGGGCAGGTTGCAGATCCATATTGTCGCGAAtgtg                        <  2:365583/149‑1 (MQ=255)                                                                                                                          aCGGTCGCCTCACCAGGTAACGTCCCGGCAGCGGTTCCAGGGTTAATCGCCAGCCAGCGCCCCGGATAAGCATCACCACTGCCAATCTCCACGCCTTTCATCAAAATGCGATAGCGGGCAGGTTGCAGATCCATATTGTCGCGAAtgtg                        >  1:198219/1‑149 (MQ=255)                                                                                                                             gTCGCCTGACCAGGTAACGTCCCTGCAGCGGTTCCAGGGTTAATCGCCAGCCAGCGCCCCGGATAAGCATCACCACTGCCAATCTCCACGCCTTTCATCAAAATGCGATAGCGGGCAGGTTGCAGATCCATATTGTCGCGAATGTGcac                     <  1:624340/149‑1 (MQ=255)                                                                                                                                     aCCAGGTAACGTCCCGGCAGCGGTTCCAGGGTTAATCGCCAGCCAGCGCCCCGGATAAGCATCACCACTGCCAATCTCCACGCCTTTCATCAAAATGCGATAGCGGGCAGGTTGCAGATCCATATTGTCGCGAATGTGCACCACTggcg             >  2:558673/1‑149 (MQ=255)                                                                                                                                           tAACGTCCCGGCAGCGGTTCCAGGGTTAATCGCCAGCCAGCGCCCCGGATAAGCATCACCACTGCCAATCTCCACGCCTTTCATCAAAATGCGATAGCGGGCAGGTTGCAGATCCATATTGTCGCGAATGTGCCCCACTGGCGGCAGaa       >  1:19091/1‑149 (MQ=255)                                                                                                                                            aaCGTCCCGGCAGCGGTTCCAGGGTTAATCGCCAGCCAGCGCCCCGGATAAGCATCACCACTGCCAATCTCCACGCCTTTCATCAAAATGCGATAGCGGGCAGGTTGCAGATCCATATTGTCGCGAATGTGCACCACTGTCGGCAGaaa      >  2:1408185/1‑149 (MQ=255)                                                                                                                                             aCGTCCCGGCAGCGGTTCCAGGGTTAATCGCCAGCCAGCGCCCCGGATAAGCATCACCACTGCCAATCTCCACGCCt                                                                             <  2:571700/77‑1 (MQ=255)                                                                                                                                             aCGTCCCGGCAGCGGTTCCAGGGTTAATCGCCAGCCAGCGCCCCGGATAAGCATCACCACTGCCAATCTCCACGCCt                                                                             >  1:571700/1‑77 (MQ=255)                                                                                                                                             aCGTCCCGGCAGCGGTTCCAGGGTTAATCGCCAGCCAGCGCCCCGGATAAGCATCACCACTGCCAATCTCCACGCCTTTCATCAAAATGCGATAGCGGGCAGGTTGCAGATCCATATTGTCGCGAATGTGCACCACTGGCGGCAGAAAt     <  1:920886/149‑1 (MQ=255)                                                                                                                                              cGTCCCGGCAGCGGTTCCAGGGTTAATCGCCAGCCAGCGCCCCGGATAAGCATCACCACTGCCAATCTCCACGCCTTTCATCAAAATGCGATAGCGGGCAGGTTGCAGATCCATATTGTCGCGAATGTGCACCACTGGCGGCAGAAATc    >  1:814289/1‑149 (MQ=255)                                                                                                                                                tCCCGGCAGCGGTTCCAGGGTTAATCGCCAGCCAGCGCCCCGGATAAGCATCACCCCTGCCAATCTCCCCGCCTTTCATCAAAATGCGATAGCGGGCAGGTTGCAGCTCCATATTGTCGCGAATGTGCACCACTGGCGGCAGAAATccc  >  1:960223/1‑149 (MQ=255)                                                                                                                                                 |                                                                                                                                                    GAGGTGGTTAAGATGCGTTGCTACCACCGTGCTGGCCTCAACCACTGTGTACCCCTGAATCTGCGCCTGTTCTTTTAGCGCACTTTCAATCCAGATAGCATTCAGGCCAAATGCCGGATCGACGGTCGCCTCACCAGGTAACGTCCCGGCAGCGGTTCCAGGGTTAATCGCCAGCCAGCGCCCCGGATAAGCATCACCACTGCCAATCTCCACGCCTTTCATCAAAATGCGATAGCGGGCAGGTTGCAGATCCATATTGTCGCGAATGTGCACCACTGGCGGCAGAAATCCC  >  NC_000913/1963566‑1963857

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.