| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 1,622,834 | A→T | 5.4% | noncoding (81/98 nt) | mgrR ← | sRNA antisense regulator down regulates YgdQ and EptB, PhoPQ‑regulated, Hfq‑dependent; affects sensitivity to antimicrobial peptides |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,622,834 | 0 | A | T | 5.4% | 324.2 / 5.3 | 103 | noncoding (81/98 nt) | mgrR | sRNA antisense regulator down regulates YgdQ and EptB, PhoPQ‑regulated, Hfq‑dependent; affects sensitivity to antimicrobial peptides |
| Reads supporting (aligned to +/- strand): ref base A (44/53); new base T (4/2); total (48/55) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.14e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01 | |||||||||||
Only 100 of 103 total aligned reads displayed.
TTTTATTTTCTGGTTTTCTGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGGCCCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGACACAGTAGCATCAGTTTTCTCAATGAATGTTAAACGGAGCTTAAACTCGGTTAATCACATT > NC_000913/1622689‑1622980 | ttttattttCTGGTTTTCTGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGGCCCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAAcc > 1:863358/1‑149 (MQ=255)ttttattttCTGGTTTTCTGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGGCCCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAAcc > 2:1087994/1‑149 (MQ=255) tattttCTGGTTTTCTGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGGCCCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACcggc < 2:899616/149‑1 (MQ=255) tttctggttttctggCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGGCCCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGt < 1:646595/149‑1 (MQ=255) tggttttctggCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGGCCCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAATCCGGCGGTGAAt > 1:1032069/1‑149 (MQ=255) ggttttctggCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATATTCCCTTACCTAACCGGCCCCTTGTTACAGTTGTGTACATGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCGGTTTACTGGCGGtttttt < 1:1134283/149‑6 (MQ=255) ggttttctggCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGGCCCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATg < 1:1013013/149‑1 (MQ=255) ggttttctggCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGGCCCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATg < 2:935530/149‑1 (MQ=255) ggttttctggCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGGCCCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATg > 1:925070/1‑149 (MQ=255) tttctggCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGGCCCCTTGTTACAGTTGTGTACACGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCtt < 1:1369423/149‑1 (MQ=255) ttctggCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGGCCCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTg > 1:1524220/1‑149 (MQ=255) ttctggCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCCCACCTAACCGGCCCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTg < 2:1356298/149‑1 (MQ=255) ctggCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGGCCCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCa < 2:869713/149‑1 (MQ=255) tggCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGGCCCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCAt < 1:299817/149‑1 (MQ=255) gCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGGCCCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATgg > 2:1093816/1‑149 (MQ=255) ccGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGGCCCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGa < 1:533683/149‑1 (MQ=255) gcgTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGGCCCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATa > 2:1474858/1‑149 (MQ=255) tttCAGCCACAAATGGGATGACTAATGAACGGATATAATCCCGCACCTACCCGGCCCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGAttt < 2:87101/149‑1 (MQ=255) tttCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGGCCCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGAttt < 2:1419763/149‑1 (MQ=255) cctcaAATGGGATGACAAATGATCGGAGATAATCCCTCACCTAACCGGCCCCTTGTTACCGTTGTGTACAAGGGGCCTGATTTGTATGACGGCG‑ATTAAAAACCGTCAGTAAACCGGCTGTGAATGCTTGCATGGATAGATTTGTGttt < 1:66217/146‑1 (MQ=255) ccACAAATGGGATGACTAATGAACGGAGATTATCCCTCACCTAACCGGCCCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGttt > 2:184307/1‑149 (MQ=255) caacaAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGGCCCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGttt > 2:192930/3‑149 (MQ=255) acaAATGGGATGACTAATGAACGGAGTTAATCCCTCACCTACCCGGCCCCTTTTTACAGTTGTGTACATGGGGCCTGATTTTTATGACGGAA‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTg < 1:101584/149‑1 (MQ=255) aaaTGGGATGACTAATGAACGGAGATAATCCCTCACCT‑ACCGGCCCCTTGTTTCAGTTGTGAACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCtt > 1:549464/1‑149 (MQ=255) aTGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGGCCCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCttt < 1:1151937/149‑1 (MQ=255) aTGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGGCCCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCttt < 2:1084659/149‑1 (MQ=255) gggATGACTAATGAACGGAGATAATCCCTCACCTAACCGGCCCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTa < 2:40957/149‑1 (MQ=255) gATGACTAATGAACGGAGATAATCCCTCACCTAACCGGCCCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACg > 2:930940/1‑149 (MQ=255) tAATGAACGGAGATAATCCCTCACCTAACCGGCCCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCGAAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGATaaa > 2:214978/1‑148 (MQ=255) tAATGAACGGAGATAATCCCTCACCTAACCGGCCCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACa > 1:1422999/1‑149 (MQ=255) tGAACGGAGATAATCCCTCACCTAACCGGCCCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGc < 2:1575387/149‑1 (MQ=255) aaCGGAGATAATCCCTCACCTAACCGGCCCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCAt > 2:1599177/1‑149 (MQ=255) gagaTAATCCCTCACCTAACCGGCCCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTc > 2:120340/1‑149 (MQ=255) gagaTAATCCCTCACCTAACCGGCCCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTc > 2:558861/1‑149 (MQ=255) gaTAATCCCTCACCTAACCGGCCCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCt < 1:337771/149‑1 (MQ=255) aTAATCCCTCACCTAACCGGCCCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTg < 1:1085760/149‑1 (MQ=255) aTAATCCCTCACCTAACCGGCCCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTg < 2:315932/149‑1 (MQ=255) tAATCCCTCACCTAACCGGCCCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGc > 2:807462/1‑149 (MQ=255) tAATCCCTCACCTAACCGGCCCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGc < 1:1559187/149‑1 (MQ=255) aaTCCCTCACCTAACCGGCCCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTTCTTTTACGCTAACAGGCATTTTCCTGCa < 1:858043/149‑1 (MQ=255) aaTCCCTCACCTAACCGGCCCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCa > 1:569727/1‑149 (MQ=255) aaTCCCTCACCTAACCGGCCCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTACTGCa > 2:1588562/1‑149 (MQ=255) tCCCTCACCTAACCGGCCCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCGAAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCAc > 1:575397/1‑149 (MQ=255) tCCCTCACCTAACCGGCCCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACt < 2:275760/149‑1 (MQ=255) ccTCACCTAACCGGCCCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGa > 2:871116/1‑149 (MQ=255) ccTCACCTAACCGGCCCCTTGTTACAGTTGTGTACAAGGGGCCGGAATTTTATGCCGGCG‑AAAAAAAACCGCCAGTAAACCGGCGCTGAAGGCATGAATGGATAGATTTGTGTTTTGCATTTTCGCTAACCGGCAGTTTCCTGCACTGa > 2:810825/1‑149 (MQ=255) cTCACCTAACCGGCCCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGAt > 1:1204677/1‑149 (MQ=255) cTCACCTAACCGGCCCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGAt < 1:628857/149‑1 (MQ=255) tCACCTAACCGGCCCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATa > 2:1120438/1‑149 (MQ=255) cACCTAACCGGCCCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATaa < 1:803729/149‑1 (MQ=255) aCCTAACCGGCCCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAAc < 1:317767/149‑1 (MQ=255) ccGGCCCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCg > 1:777592/1‑149 (MQ=255) cGGCCCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCATTAAATCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGt < 2:1591112/149‑1 (MQ=255) ggCCCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGTGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGtt < 1:853775/149‑1 (MQ=255) ggCCCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGtt < 1:1599177/149‑1 (MQ=255) ccccTTGTTACAGTTTTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGa < 2:715244/149‑1 (MQ=255) ccccTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGa < 1:1093816/149‑1 (MQ=255) ccTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGCATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATAGTTGtca > 1:223449/1‑149 (MQ=255) cTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGacac > 2:124022/1‑149 (MQ=255) cTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGacac < 1:1087994/149‑1 (MQ=255) gTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGAt < 2:1541691/130‑1 (MQ=255) gTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGAt > 1:1541691/1‑130 (MQ=255) gTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGACACAGt > 1:603187/1‑149 (MQ=255) ttACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTATCAGGCATTTTCCTGCACTGATAACGAATCGTTGACACAGTa > 2:245967/1‑149 (MQ=255) ttACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGACACAGTa > 1:1423062/1‑149 (MQ=255) aGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGACACAGTAGCAt > 2:1331172/1‑149 (MQ=255) ttGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAAAGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGACACCGTAGCATCa > 2:48865/1‑149 (MQ=255) tgtACAAGTGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGACACAGTAGCATCAGtt < 2:604934/149‑1 (MQ=255) tACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGACACAGTAGCATCAGtttt < 2:1422999/149‑1 (MQ=255) tACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGACACAGTAGAATCAGtttt > 1:1255954/1‑149 (MQ=255) tACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGAGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGACACAGTAGCATCAGtttt < 2:863358/149‑1 (MQ=255) aCAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGACACAGTAGCATCAGTTTtc > 1:880983/1‑149 (MQ=255) cAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGACACAGTAGCATCAGTTTtct < 2:348144/149‑1 (MQ=255) cAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGACACAGTAGCATCAGTTTtct > 1:1357073/1‑149 (MQ=255) cAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGACACAGTAGCATCAGTTTtct < 2:606502/149‑1 (MQ=255) gCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGACACAGTAGCATCAGTTTTCTCaatga > 1:492240/1‑149 (MQ=255) gCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGACACAGTAGCATCAGTTTTCTCaatga > 2:947131/1‑149 (MQ=255) ccTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGACACAGTAGCATCAGTTTTCTCaatgaa < 2:1561152/149‑1 (MQ=255) ccTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGACACAGTAGCATCAGTTTTCTCaatgaa < 2:1085057/149‑1 (MQ=255) cTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGAt > 1:577819/1‑108 (MQ=255) cTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGAt < 2:577819/108‑1 (MQ=255) tGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGACACAGTAGCATCAGTTTTCTCaatgaatg > 1:133536/1‑149 (MQ=255) aTTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGACACAGTAGCATCAGTTTTCTCAATGAATGtt < 2:777592/149‑1 (MQ=255) tttttATGACGGCGAAAAAAAAACCGCCAGTAAACAGGCTGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGACACAGTAGCATCAGTTTTCTCAATGAATGtt < 1:214978/149‑1 (MQ=255) ttttATGACGGCG‑ATAAAAAACCGCCTGTATACCGGAGGTTATTGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTATCAGGCATTTTCCTGCACTGATAACGATTCGTTGACACAGTAGCATCAGTTTTCTCATTGAATGTTaa < 1:184307/149‑1 (MQ=255) tttATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGACACAGTAGCATCAGTTTTCTCAATGAATGTTaaa < 1:947131/149‑1 (MQ=255) tATGACGGCGAAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGACACAGTAGCATCAGTTTTCTCAATGAATGTTAAAc < 2:575397/149‑1 (MQ=255) ggCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGACACAGTAGCATCAGTTTTCTCAATGAATGTTAAACGGAGCtt > 1:875361/1‑149 (MQ=255) aaaaaaaaCCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGACACAGTAGCATCAGTTTTCTCAATGAATGTTAAACGGAGCTTAAAc > 1:1450159/1‑149 (MQ=255) gcattcaCCGCCGGTTTACTGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGACACAGTAGCATCAGTTTTCTCAATGAATGTTAAACGGAGCTTAAACt > 1:199179/7‑149 (MQ=255) ttcaCCGCCGGTTTACTGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGACACAGTAGCATCAGTTTTCTCAATGAATGTTAAACGGAGCTTAAACTCgg > 1:1337329/4‑149 (MQ=255) ttcaCCGCCGGTTTACTGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGACACAGTAGCATCAGTTTTCTCAATGAATGTTAAACGGAGCTTAAACTCgg > 1:1400833/4‑149 (MQ=255) aaatCCGCCAGTAAACCGGCGGGGAATGCTTGCATGGAAAGATTTGTGGTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGACACAGTAGCAGCAGTTTTCTCAATGAATGTTAAACGGAGCTTAAACTCgg < 2:223338/149‑1 (MQ=255) aaaaCCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGACACAGTAGCATCAGTTTTCTCAATGAATGTTAAACGGAGCTTAAACTCgg < 1:120340/149‑1 (MQ=255) aaaCCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGACACAGTAGCATCAGTTTTCTCAATGAATGTTAAACGGAGCTTAAACTCGGt < 1:1331172/149‑1 (MQ=255) ccgccgGTTTACTGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGACACAGTAGCATCAGTTTTCTCAATGAATGTTAAACGGAGCTTAAACTCGGTTaa > 2:1392858/1‑149 (MQ=255) cGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGACACAGTAGCATCAGTTTTCTCAATGAATGTTAAACGGAGCTTAAACTCGGTTAAt < 2:1470957/149‑1 (MQ=255) cGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGACACAGTAGCATCAGTTTTCTCAATGAATGTTAAACGGAGCTTAAACTCGGTTAAt < 1:377071/149‑1 (MQ=255) ccAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGACACAGTAGCATCAGTTTTCTCAATGAATGTTAAACGGAGCTTAAACTCGGTTAATca > 1:469681/1‑149 (MQ=255) tAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGACACAGTAGCATCAGTTTTCTCAATGAATGTTAAACGGAGCTTAAACTCGGTTAATCACAtt < 2:1497040/149‑1 (MQ=255) | TTTTATTTTCTGGTTTTCTGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGGCCCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGACACAGTAGCATCAGTTTTCTCAATGAATGTTAAACGGAGCTTAAACTCGGTTAATCACATT > NC_000913/1622689‑1622980 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |