| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 610135 = | NA (NA) | 5 (0.010) | 3/264 | NT | NA | noncoding (19/98 nt) | RIP54 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP54 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | 2654977 = | NA (NA) | noncoding (8/97 nt) | RIP183 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP183 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
ACGTACGTGGTATATGAGCGTAAACACCCACTTCTGATGCTAACGTCAGATTGTTGACAAAGTGCGCGTCGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCAGGACCATGTAGGCCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/610290‑610135‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgatGCGCTACGCTTATCAGGC > NC_000913/2654977‑2654994 ACGTACGTGGTATATGAGCGTAAACACCCACTTCTGATGCTAACGTCAGATTGTTGACAAAGTGCGCGTCGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCAGGACCATGTAGG > 2:3443037/1‑150ACGTACGTGGTATATGAGCGTAAACACCCACTTCTGATGCTAACGTCAGATTGTTGACAAAGTGCGCGTCGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCAGGACCATGTAGG < 1:5895949/150‑1 CGTACGTGGTATATGAGCGTAAACACCCACTTCTGATGCTAACGTCAGATTGTTGACAAAGTGCGCGTCGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCAGGACCATGTAGGC < 1:3517974/150‑1 CGTACGTGGTATATGAGCGTAAACACCCACTTCTGATGCTAACGTCAGATTGTTGACAAAGTGCGCGTCGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCAGGACCATGTAGGC < 1:4226845/150‑1 CGTACGTGGTATATGAGCGTAAACACCCACTTCTGATGCTAACGTCAGATTGTTGACAAAGTGCGCGTCGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCAGGACCATGTAGGC < 1:5710606/150‑1 CGTACGTGGTATATGAGCGTAAACACCCACTTCTGATGCTAACGTCAGATTGTTGACAAAGTGCGCGTCGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCAGGACCATGTAGGC < 1:5710626/150‑1 CGTACGTGGTATATGAGCGTAAACACCCACTTCTGATGCTAACGTCAGATTGTTGACAAAGTGCGCGTCGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCAGGACCATGTAGGC < 1:5869327/150‑1 GTACGTGGTATATGAGCGTAAACACCCACTTCTGATGCTAACGTCAGATTGTTGACAAAGTGCGCGTCGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCAGGACCATGTAGGCC > 2:3538318/1‑150 GTACGTGGTATATGAGCGTAAACACCCACTTCTGATGCTAACGTCAGATTGTTGACAAAGTGCGCGTCGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCAGGACCATGTAGGCC < 2:3146660/150‑1 GTACGTGGTATATGAGCGTAAACACCCACTTCTGATGCTAACGTCAGATTGTTGACAAAGTGCGCGTCGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCAGGACCATGTAGGCC < 2:3146647/150‑1 TACGTGGTATATGAGCGTAAACACCCACTTCTGATGCTAACGTCAGATTGTTGACAAAGTGCGCGTCGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCAGGACCATGTAGGCCT < 2:1470818/150‑1 ACGTGGTATATGAGCGTAAACACCCACTTCTGATGCTAACGTCAGATTGTTGACAAAGTGCGCGTCGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCAGGACCATGTAGGCCTG < 2:50037/150‑1 CGTGGTATATGAGCGTAAACACCCACTTCTGATGCTAACGTCAGATTGTTGACAAAGTGCGCGTCGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCAGGACCATGTAGGCCTGA < 2:2965608/150‑1 CGTGGTATATGAGCGTAAACACCCACTTCTGATGCTAACGTCAGATTGTTGACAAAGTGCGCGTCGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCAGGACCATGTAGGCCTGA < 2:2855238/150‑1 GTGGTATATGAGCGTAAACACCCACTTCTGATGCTAACGTCAGATTGTTGACAAAGTGCGCGTCGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCAGGACCATGTAGGCCTGAT > 2:776601/1‑150 GTGGTATATGAGCGTAAACACCCACTTCTGATGCTAACGTCAGATTGTTGACAAAGTGCGCGTCGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCAGGACCATGTAGGCCTGAT < 1:4557263/150‑1 GTGGTATATGAGCGTAAACACCCACTTCTGATGCTAACGTCAGATTGTTGACAAAGTGCGCGTCGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCAGGACCATGTAGGCCTGAT < 1:4054977/150‑1 GTGGTATATGAGCGTAAACACCCACTTCTGATGCTAACGTCAGATTGTTGACAAAGTGCGCGTCGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCAGGACCATGTAGGCCTGAT < 1:1544807/150‑1 AACACCCACTTCTGATGCTAACGTCAGATTGTTGACAAAGTGCGCGTCGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCAGGACCATGTAGGCCTGATGCGCTACGCTTATCAG < 1:2999396/150‑1 AACACCCACTTCTGATGCTAACGTCAGATTGTTGACAAAGTGCGCGTCGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCAGGACCATGTAGGCCTGATGCGCTACGCTTATCAG < 1:105719/150‑1 ACACCCACTTCTGATGCTAACGTCAGATTGTTGACAAAGTGCGCGTCGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCAGGACCATGTAGGCCTGATGCGCTACGCTTATCAGG < 1:2028647/150‑1 CACCCACTTCTGATGCTAACGTCAGATTGTTGACAAAGTGCGCGTCGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCAGGACCATGTAGGCCTGATGCGCTACGCTTATCAGGC < 1:3538318/150‑1 CACCCACTTCTGATGCTAACGTCAGATTGTTGACAAAGTGCGCGTCGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCAGGACCATGTAGGCCTGATGCGCTACGCTTATCAGGC < 1:2194129/150‑1 ACGTACGTGGTATATGAGCGTAAACACCCACTTCTGATGCTAACGTCAGATTGTTGACAAAGTGCGCGTCGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCAGGACCATGTAGGCCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/610290‑610135‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgatGCGCTACGCTTATCAGGC > NC_000913/2654977‑2654994 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |