| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2654970 = | NA (NA) | 6 (0.020) | 3/264 | NT | NA | noncoding (1/97 nt) | RIP183 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP183 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | = 3330532 | NA (NA) | noncoding (73/98 nt) | RIP243 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP243 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
CAACAAATTGCGAATCCCTTGTAGGCCTGATAAGCGTAGCGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2655018‑2654970‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcCTACAAGAGAATTGCAATATGTTGAATTTGCACGATTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGCGCACTTTGTCAATAATCTGAAGCCCCGGCCATGTGCCGGGGTTTCTTTTTGACTAATTGTTCTG < NC_000913/3330532‑3330385 CAACATATTGCAATTCTCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCCTACAAGAGAATTGCAATATGTTGAATTTGCACGATTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGCGCACTTTGTCAATAATC > 2:1228019/1‑150CAACATATTGCAATTCTCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCCTACAAGAGAATTGCAATATGTTGAATTTGCACGATTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGCGCACTTTGTCAATAATC > 2:1227999/1‑150 TAGGCCTGATAAGCGTAGCGCATCAGGCCTACAAGAGAATTGCAATATGTTGAATTTGCACGATTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGCGCACTTTGTCAATAATCTGAAGCCCCGGCCATGTGCCG > 1:2466669/1‑150 GCCTGATAAGCGTAGCGCATCAGGCCTACAAGAGAATTGCAATATGTTGAATTTGCACGATTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGCGCACTTTGTCAATAATCTGAAGCCCCGGCCATGTGCGGGGG > 2:1543773/1‑150 GCCTGATAAGCGTAGCGCATCAGGCCTACAAGAGAATTGCAATATGTTGAATTTGCACGATTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGCGCACTTTGTCAATAATCTGAAGCCCCGGCCATGTGCCGGGG > 1:374870/1‑150 GCCTGATAAGCGTAGCGCATCAGGCCTACAAGAGAATTGCAATATGTTGAATTTGCACGATTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCAGCATAAACAAAGCGCACTTTGTCAATAATCTGAAGCCCCGGCCATGTGCCGGGG > 2:1485959/1‑150 ATCAGGCCTACAAGAGAATTGCAATATGTTGAATTTGCACGATTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGCGCACTTTGTCAATAATCTGAAGCCCCGGCCATGTGCCGGGGTTTCTTTTTGACTAATTG > 2:4353819/1‑150 ATCAGGCCTACAAGAGAATTGCAATATGTTGAATTTGCACGATTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGCGCACTTTGTCAATAATCTGAAGCCCCGGCCATGTGCCGGGGTTTCTTTTTGACTAATTG > 1:318800/1‑150 AGGCCTACAAGAGAATTGCAATATGTTGAATTTGCACGATTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCGGAAACAAAGCGCACTTTGTCAATAAGCTGAAGCCCCGGCCGTGTGCCGGGGTTTCTTTTTGACGAAGTGTTC > 2:1490993/1‑150 AGGCCTACAAGAGAATTGCAATATGTTGAATTTGCACGATTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGCGCACTTTGTCAATAATCTGAAGCCCCGGCCATGTGCCGGGGTTTCTTTTTGACTAATTGTTC > 2:945563/1‑150 AGGCCTACAAGAGAATTGCAATATGTTGAATTTGCACGATTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGCGCACTTTGTCAATAATCTGAAGCCCCGGCCATGTGCCGGGGTTTCTTTTTGACTAATTGTTC > 2:5669119/1‑150 AGGCCTACAAGAGAATTGCAATATGTTGAATTTGCACGATTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGCGCACTTTGTCAATAATCTGAAGCCCCGGCCATGTGCCGGGGTTTCTTTTTGACTAATTGTTC < 2:3209905/150‑1 AGGCCTACAAGAGAATTGCAATATGTTGAATTTGCACGATTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGCGCACTTTGTCAATAATCTGAAGCCCCGGCCATGTGCCGGGGTTTCTTTTTGACTAATTGTTC < 2:1337696/150‑1 AGGCCTACAAGAGAATTGCAATATGTTGAATTTGCACGATTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGCGCACTTTGTCAATAATCTGAAGCCCCGGCCATGTGCCGGGGTTTCTTTTTGACTAATTGTTC < 1:4542421/150‑1 AGGCCTACAAGAGAATTGCAATATGTTGAATTTGCACGATTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGCGCACTTTGTCAATAATCTGAAGCCCCGGCCATGTGCCGGGGTTTCTTTTTGACTAATTGTTC > 1:1728351/1‑150 AGGCCTACAAGAGAATTGCAATATGTTGAATTTGCACGATTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGCGCACTTTGTCAATAATCTGAAGCCCCGGCCATGTGCCGGGGTTTCTTTTTGACTAATTGTTC > 1:1939206/1‑150 AGGCCTACAAGAGAATTGCAATATGTTGAATTTGCACGATTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGCGCACTTTGTCAATAATCTGAAGCCCCGGCCATGTGCCGGGGTTTCTTTTTGACTAATTGTTC > 1:1746704/1‑150 AGGCCTACAAGAGAATTGCAATATGTTGAATTTGCACGAGTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGCGCACTTTGTCACTAATCTGAAGCCCCGGCCATGTGCCGGGGTTTCTTTTTGACTAATTGTTC > 1:1728247/1‑150 GGCCTACAAGCGAATTGCAATATGTTGAATTTGCACGATTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGCGCACTTTGTCAATAATCTGAAGCCCCGGCCATGTGCCGGGGTTTCTTTTTGACTAATTGTTCT < 2:5508185/150‑1 GGCCTACAAGAGCATTGCAATATGTTGAATGTGCACGATTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGCGCACTTTGTCAATAATCTGAAGCCCCGGCCATGTGCCGGGGTTTCTTTTTGACTAATTGTTCT < 2:498029/150‑1 GGCCTACAAGAGAATTGCAATATGTTGAATTTGCACGATTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGCGCACTTTGTCAATAATCTGAAGCCCCGGCCATGTGCCGGGGTTTCTTTTTGACTAATTGTTCT > 2:3299972/1‑150 GGCCTACAAGAGAATTGCAATATGTTGAATTTGCACGATTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGCGCACTTTGTCAATAATCTGAAGCCCCGGCCATGTGCCGGGGTTTCTTTTTGACTAATTGTTCT > 2:5474073/1‑150 GGCCTACAAGAGAATTGCAATATGTTGAATTTGCACGATTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGCGCACTTTGTCAATAATCTGAAGCCCCGGCCATGTGCCGGGGTTTCTTTTTGACTAATTGTTCT < 2:537652/150‑1 GGCCTACAAGAGAATTGCAATATGTTGAATTTGCACGATTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGCGCACTTTGTCAATAATCTGAAGCCCCGGCCATGTGCCGGGGTTTCTTTTTGACTAATTGTTCT < 2:374488/150‑1 GGCCTACAAGAGAATTGCAATATGTTGAATTTGCACGATTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGCGCACTTTGTCAATAATCTGAAGCCCCGGCCATGTGCCGGGGTTTCTTTTTGACTAATTGTTCT > 1:505989/1‑150 GGCCTACAAGAGAATTGCAATATGTTGAATTTGCACGATTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGCGCACTTTGTCAATAATCTGAAGCCCCGGCCATGTGCCGGGGTTTCTTTTTGACTAATTGTTCT > 1:2211762/1‑150 GGCCTACAAGAGAATTGCAATATGTTGAATTTGCACGATTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGCGCACTTTGTCAATAATCTGAAGCCCCGGCCATGTGCCGGGGTTTCTTTTTGACTAATTGTTCT < 1:2472757/150‑1 GGCCTACAAGAGAATTGCAATATGTTGAATTTGCACGATTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGCGCACTTTGTCAATAATCTGAAGCCCCGGCCATGTGCCGGGGTTTCTTTTTGACTAATTGTTCT < 1:5496790/150‑1 GCCTACAAGAGAATTGCAATATGTTGAATTTGCACGATTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGCGCACTTTGTCAATAATCTGAAGCCCCGGCCATGTGCCGGGGTTTCTTTTTGACTAATTGTTCTG > 1:3520975/1‑150 GCCTACAAGAGAATTGCAATATGTTGAATTTGCACGATTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGCGCACTTTGTCAATAATCTGAAGCCCCGGCCATGTGCCGGGGTTTCTTTTTGACTAATTGTTCTG > 1:3578242/1‑150 GCCTACAAGAGAATTGCAATATGTTGAATTTGCACGATTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGCGCACTTTGTCAATAATCTGAAGCCCCGGCCATGTGCCGGGGTTTCTTTTTGACTAATTGTTCTG > 1:3767962/1‑150 CAACAAATTGCGAATCCCTTGTAGGCCTGATAAGCGTAGCGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2655018‑2654970‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcCTACAAGAGAATTGCAATATGTTGAATTTGCACGATTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGCGCACTTTGTCAATAATCTGAAGCCCCGGCCATGTGCCGGGGTTTCTTTTTGACTAATTGTTCTG < NC_000913/3330532‑3330385 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |