| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 430986 = | NA (NA) | 5 (0.010) | 4/264 | NT | NA | noncoding (19/98 nt) | REP37 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP37 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 3740971 = | NA (NA) | noncoding (8/98 nt) | RIP269 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP269 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
TTACAACTTCTGATTATGAAAATGCCGGGATTTATTCCCGGCATTTCTGATTGTTAACAACGTGTGCTTTGTTCATGCCGGATGCGGCGTAAACGCTTTGTCCGGCCAACAAAAGCACGTAAATTCAATATATTGCTGAAATAACGTAGGCCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/431141‑430986‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgatGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAAT > NC_000913/3740971‑3741015 TTACAACTTCTGATTATGAAAATGCCGGGATTTATTCCCGGCATTTCTGATTGTTAACAACGTGTGCTTTGTTCATGCCGGATGCGGCGTAAACGCTTTGTCCGGCCAACAAAAGCACGTAAATTCAATATATTGCTGAAATAACGTAGG > 2:2461156/1‑150 TACAACTTCTGATTATGAAAATGCCGGGATTTATTCCCGGCATTTCTGATTGTTAACAACGTGTGCTTTGTTCATGCCGGATGCGGCGTAAACGCTTTGTCCGGCCAACAAAAGCACGTAAATTCAATATATTGCTGAAATAACGTAGGC < 1:3926912/150‑1 TACAACTTCTGATTATGAAAATGCCGGGATTTATTCCCGGCATTTCTGATTGTTAACAACGTGTGCTTTGTTCATGCCGGATGCGGCGTAAACGCTTTGTCCGGCCAACAAAAGCACGTAAATTCAATATATTGCTGAAATAACGTAGGC < 2:6789663/150‑1 TACAACTTCTGATTATGAAAATGCCGGGATTTATTCCCGGCATTTCTGATTGTTAACAACGTGTGCTTTGTTCATGCCGGATGCGGCGTAAACGCTTTGTCCGGCCAACAAAAGCACGTAAATTCAATATATTGCTGAAATAACGTAGGC < 2:6789185/150‑1 TACAACTTCTGATTATGAAAATGCCGGGATTTATTCCCGGCATTTCTGATTGTTAACAACGTGTGCTTTGTTCATGCCGGATGCGGCGTAAACGCTTTGTCCGGCCAACAAAAGCACGTAAATTCAATATATTGCTGAAATAACGTAGGC < 2:5871222/150‑1 TACAACTTCTGATTATGAAAATGCCGGGATTTATTCCCGGCATTTCTGATTGTTAACAACGTGTGCTTTGTTCATGCCGGATGCGGCGTAAACGCTTTGTCCGGCCAACAAAAGCACGTAAATTCAATATATTGCTGAAATAACGTAGGC < 1:5793143/150‑1 ACAACTTCTGATTATGAAAATGCCGGGATTTATTCCCGGCATTTCTGATTGTTAACAACGTGTGCTTTGTTCATGCCGGATGCGGTGTACACGCTTTGTCCGGCCAACAAAAGCACGAAAATTCAATATATTGCTGAAATAACGTAGGCC > 2:5888685/1‑150 ACAACTTCTGATTATGAAAATGCCGGGATTTATTCCCGGCATTTCTGATTGTTAACAACGTGTGCTTTGTTCATGCCGGATGCGGTGTAAACGCTTTGTCCGGCCAACAAAAGCACGTAAATTCAATATATTGCTGAAATAACGTAGGCC > 2:5889762/1‑150 ACAACTTCTGATTATGAAAATGCCGGGATTTATTCCCGGCATTTCTGATTGTTAACAACGTGTGCTTTGTTCATGCCGGATGCGGCGTAAACGCTTTGTCCGGCCAACAAAAGCACGTAAATTCAATATATTGCTGAAATAACGTAGGCC > 2:6646408/1‑150 ACAACTTCTGATTATGAAAATGCCGGGATTTATTCCCGGCATTTCTGATTGTTAACAACGTGTGCTTTGTTCATGCCGGATGCGGCGTAAACGCTTTGTCCGGCCAACAAAAGCACGTAAATTCAATATATTGCTGAAATAACGTAGGCC > 2:5256604/1‑150 ACAACTTCTGATTATGAAAATGCCGGGATTTATTCCCGGCATTTCTGATTGTTAACAACGTGTGCTTTGTTCATGCCGGATGCGGCGTAAACGCTTTGTCCGGCCAACAAAAGCACGTAAATTCAATATATTGCTGAAATAACGTAGGCC > 2:5256643/1‑150 AACTTCTGATTATGAAAATGCCGGGATTTATTCCCGGCATTTCTGCTTGTTAACAACGTGTGCTTTGTTCATGCCGGATGCGGCGTAAACGCTTTGTCCGGCCAACAAAAGCACGTAAATTCAATATATTGCTGAAATAACGTAGGCCTG > 1:3375957/1‑150 AACTTCTGATTATGAAAATGCCGGGATTTATTCCCGGCATTTCTGATTGTTAACAACGTGTGCTTTGTTCATGCCGGATGCGGCGTAAACGCTTTGTCCGGCCAACAAAAGCACGTAAATTCAATCTATTGCTGAAATAACGTAGGCCTG > 2:3430833/1‑150 AACTTCTGATTATGAAAATGCCGGGATTTATTCCCGGCATTTCTGATTGTTAACAACGTGTGCTTTGTTCATGCCGGATGCGGCGTAAACGCTTTGTCCGGCCAACAAAAGCACGTAAATTCAATATATTGCTGAAATAACGTAGGCCTG > 1:5004975/1‑150 ACTTCTGATTATGAAAATGCCGGGATTTATTCCCGGCTTTTCTGATTGTTAACAACGTGTGCTTTGTTCATGCCGGATGCGGCGTAAACGCTTTGTCCGGCCAACAAAAGCACGTAAATTCAATATATTGCTGAAATAACGTAGGCCTGA < 2:6589125/150‑1 ACTTCTGATTATGAAAATGCCGGGATTTATTCCCGGCATTTCTGATTGTTAACAACGTGTGCTTTGTTCATGCCGGATGCGGCGTAAACGCTTTGTCCGGCCAACAAAAGCACGTAAATTCAATATATTGCTGAAATAACGTAGGCCTGA < 2:6287925/150‑1 CTTCTGATTATGAAAATGCCGGGATTTATTCCCGGCATTTCTGATTGTTAACAACGTGTGCTTTGTTCATGCCGGATGCGGCGTAAACGCTTTGTCCGGCCAACAAAAGCACGTAAATTCAATATATTGCTGAAATAACGTAGGCCTGAT < 1:5029546/150‑1 CTTCTGATTATGAAAATGCCGGGATTTATTCCCGGCATTTCTGATTGTTAACAACGTGTGCTTTGTTCATGCCGGATGCGGCGTAAACGCTTTGTCCGGCCAACAAAAGCACGTAAATTCAATATATTGCTGAAATAACGTAGGCCTGAT < 1:5029601/150‑1 TTCTGATTATGAAAATGCCGGGATTTATTCCCGGCATTTCTGATTGTTAACAACGTGTGCTTTGTTCATGCCGGATGCGGCGTAAACGCTTTGTCCGGCCAACAAAAGCACGTAAATTCAATATATTGCTGAAATAACGTAGGCCTGATc > 1:6307496/1‑149 TGCCGGGATTTATTCCCGGCATTTCTGATTGTTAACAACGTGTGCTTTGTTCATGCCGGATGCGGCGTAAACGCTTTGTCCGGCCAACAAAAGCACGTAAATTCAATATATTGCTGAAATAACGTAGGCCGGATGCGCTACGCTTATCAG < 2:4307205/150‑1 GCCGGGATTTATTCCCGGCATTTCTGATTGTTAACAACGTGTGCTTTGTTCATGCCGGATGCGGCGTAAACGCTTTGTCCGGCCAACAAAAGCACGTAAATTCAATATATTGCTGAAATAACGTAGGCCTGATGCGCTACGCTTATCAGG < 1:528796/150‑1 GCCGGGATTTATTCCCGGCATTTCTGATTGTTAACAACGTGTGCGTTGTTCATGCCGGATGCGGCGTAAACGCTTTGTCCGGCCAACAAAAGCACGTAAATTCAATATATTGCTGAAACAACGTAGGCCTGATGCGCTACGCTTATCAGG < 2:5519829/150‑1 GGATTTATTCCCGGCATTTCTGATTGTTAACAACGTGTGCTTTGTTCATGCCGGATGCGGCGTAAACGCTTTGTCCGGCCAACAAAAGCACGTAAATTCAATATATTGCTGAAATAACGTAGGCCTGATGCGCTACGCTTATCAGGCCTA < 2:6461796/150‑1 TGTTAACAACGTGTGCTTTGTTCATGCCGGATGCGGCGTAAACGCTTTGTCCGGCCAACAAAAGCACGTAAATTCAATATATTGCTGAAATAACGTAGGCCTGATGCGCTACGCTTATCAGGCCTACGTTATTTCAGCAATATATTGAAT < 2:1493693/150‑1 TTACAACTTCTGATTATGAAAATGCCGGGATTTATTCCCGGCATTTCTGATTGTTAACAACGTGTGCTTTGTTCATGCCGGATGCGGCGTAAACGCTTTGTCCGGCCAACAAAAGCACGTAAATTCAATATATTGCTGAAATAACGTAGGCCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/431141‑430986‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgatGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAAT > NC_000913/3740971‑3741015 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |