| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2538614 | NA (NA) | 13 (0.030) | 5/264 | NT | NA | noncoding (80/98 nt) | RIP174 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP174 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | = 2538625 | NA (NA) | noncoding (91/98 nt) | RIP174 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP174 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
TACGGCGTTTCCTCACGAAAATTAAATACTGCATTTGTCGGCAGCAACAACTGTTAAAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2538459‑2538614‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgatGCGCTACGCTTATCAGGCCTACAAGGTTTCTGCAATATATTGAATTAGCACGATTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGCGCACTTTTTTAACAGTTGTTGCTGCCGACAAATGCAGTATTTAA < NC_000913/2538625‑2538480 TACGGCGTTTCCTCACGAAAATTAAATACTGCATTTGTCGGCAGCAACAACTGTTAAAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGG < 1:6310057/150‑1TACGGCGTTTCCTCACGAAAATTAAATACTGCATTTGTCGGCAGCAACAACTGTTAAAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGG < 1:5924398/150‑1 ACGGCGTTTCCTCACGAAAATTAAATACTGCATTTGTCGGCAGCAACAACTGTTAAAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATCTATTGCAGAAACCTTGTAGGC > 2:780973/1‑150 ACGGCGTTTCCTCACGAAAATTAAATACTGCATTTGTCGGCAGCAACAACTGTTAAAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGC < 2:5332209/150‑1 ACGGCGTTTCCTCACGAAAATTAAATACTGCATTTGTCGGCAGCAACAACTGTTAAAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGC < 1:5538223/150‑1 ACGGCGTTTCCTCACGAAAATTAAATACTGCATGTGTCGGCAGCAACAACTGTTAAAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGC < 1:5538301/150‑1 aGGCGTTTCCTCACGAAAATTAAATACTGCATTTGTCGGCAGCAAAAAATGTTAAAAAAGTGCGCTTTGTTTATGCCGGATGCTGCGTAAACGCCTTATCCGGCATACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCC < 2:945931/149‑1 CGGCGTTTCCTCACGAAAATTAAATACTGCATTTGTCGGCAGCAACAACTGTTAAAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCC < 2:3430380/150‑1 CGGCGTTTCCTCACGAAAATTAAATACTGCATTTGTCGGCAGCAACAACTGTTAAAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCC < 1:2519190/150‑1 CGGCGTTTCCTCACGAAAATTAAATACTGCATTTGTCGGCAGCAACAACTGTTAAAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCC < 1:2519156/150‑1 CGGCGTTTCCTCACGAAAATTAAATACTGCATTTGTCGGCAGCAACAACTGTTAAAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCC < 1:2518977/150‑1 CGGCGTTTCCTCACGAAAATTAAATACTGCATTTGTCGGCAGCAACAACTGTTAAAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCC < 1:2518845/150‑1 GGCGTTTCCTCACGAAAATTAAATACTGCATTTGTCGGCAGCAACAACTGTTAAAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCT > 2:4648930/1‑150 GGCGTTTCCTCACGAAAATTAAATACTGCATTTGTCGGCAGCAACAACTGTTAAAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCT < 2:23959/150‑1 GGCGTTTCCTCACGAAAATTAAATACTGCATTTGTCGGCAGCAACAACTGTTAAAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCT < 2:6456602/150‑1 GGCGTTTCCTCACGAAAATTAAATACTGCATTTGTCGGCAGCAACAACTGTTAAAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCT < 2:1898140/150‑1 GGCGTTTCCTCACGAAAATTAAATACTGCATTTGTCGGCAGCAACAACTGTTAAAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCT < 1:1544710/150‑1 GGCGTTTCCTCAAGAAAATTAAATTCTGCATTTGTCGGCATCAACATCTGTTAAAAAAGTTCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCT < 1:5504787/150‑1 GGCGTTTCCACACGAAAATTAAATACTGCATTTGTCGGCAGCAACAACTGTTAAAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATACGGCCTACAAAAAAGTGCTAATTCAATATATTTCAGAAACCTTGTAGGCCT > 1:278329/1‑150 CGTTTCCTCACGAAAATTAAATACTGCATTTGTCGGCAGCAACAACTGTTAAAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGA > 1:3798486/1‑150 GTTTCCTCACGAAAATTAAATACTGCATTTGTCGGCAGCAACAACTGTTAAAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGAT < 1:3515121/150‑1 GTTTCCTCACGAAAATTAAATACTGCATTTGTCGGCAGCAACAACTGTTAAAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGAT > 1:5992152/1‑150 GTTTCCTCACGAAAATTAAATACTGCATTTGTCGGCAGCAACAACTGTTAAAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGAT < 1:7114041/150‑1 TAAATTCTGCATTTGTCGGCAGCAACAACTGTTAAAAAAGTTCGCTTTGTTTTTGCCGGATGCGGCGTAAACGCCTTATCCTGCCTACAAAATCGTGCTAATTCAATATATTGCAGTAACCTTGTAGGCCTGATGCGCTACGCTTATCAG < 1:3850063/150‑1 TAAATACTGCATTTGTCGGCAGCAACAACTGTTAAAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATGCGCTACGCTTATCAG < 1:4838216/150‑1 TAAATACTGCATTTGTCGGCAGCAACAACTGTTAAAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATGCGCTACGCTTATCAG < 1:4447218/150‑1 TAAATACTGCATTTGTCGGCAGCAACAACTGTTAAAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATGCGCTACGCTTATCAG < 1:4447068/150‑1 TAAATACTGCATTTGTCGGCAGCAACAACTGTTAAAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATGCGCTACGCTTATCAG > 1:2012265/1‑150 TAAATACTGCATTTGTCGGCAGCAACAACTGTTAAAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATGCGCTACGCTTATCAG < 1:3851327/150‑1 AATACTGCATTTGTCGGCAGCAACAACTGTTAAAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATGCGCTACGCTTATCAGGC < 2:5532229/150‑1 AATACTGCATTTGTCGGCAGCAACAACTGTTAAAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATGCGCTACGCTTATCAGGC < 2:4122487/150‑1 AATACTGCATTTGTCGGCAGCAACAACTGTTAAAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATGCGCTACGCTTATCAGGC < 2:1890110/150‑1 AATACTGCATTTGTCGGCAGCAACAACTGTTAAAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATGCGCTACGCTTATCAGGC < 1:5649183/150‑1 AATACTGCATTTGTCGGCAGCAACAACTGTTAAAAAAGTGCGCTGTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATGCGCTACGCTTATCAGGC < 2:5531875/150‑1 ACTGCATTTGTCGGCAGCAACAACTGTTAAAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGC > 1:978812/1‑124 ACTGCATTTGTCGGCAGCAACAACTGTTAAAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGC < 2:978812/124‑1 TGCATTTGTCGGCAGCAACAACTGTTAAAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATGCGCTACGCTTATCAGGCCTACA < 2:4162997/150‑1 CAACTGTTAAAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATGCGCTACGCTTATCAGGCCAACAAGGTTTCTGCAATATATT < 2:2012265/150‑1 GCCTGATGCGCTACGCTTATCAGGCCTACAAGGATTCTGCAATATATTGAATTAGCACGATTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGCGCACTTTTTTAACAGTTGTTGCTGCCGACAAATGCAGTATT < 2:2456338/150‑1 CCTGATGCGCTACGCTTATCAGGCCTACAAGGTTTCTGCAATATATTGAATTAGCACGATTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAGACAAAGCGCACTTTTTTAACAGTTGTTGCTGCCGACAAATGCCGTATTT > 2:5310209/1‑150 CCTGATGCGCTACGCTTATCAGGCCTACAAGGTTTCTGCAATATATTGAATTAGCACGATTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGCGCACTTTTTTAACAGTTGTTGCTGCCGACAAATGCAGTATTT > 2:3075327/1‑150 CTGATGCGCTACGCTTATCAGGCCTACAAGGTTTCTGCAATATATTGAATTAGCACGATTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGCGCACTTTTTTAACAGTTGTTGCTGCCGACAAATGCAGTATTTA > 2:3990684/1‑150 CTGATGCGCTACGCTTATCAGGCCTACAAGGTTTCTGCAATATATTGAATTAGCACGATTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGCGCACTTTTTTAACAGTTGTTGCTGCCGACAAATGCAGTATTTA < 2:2931310/150‑1 CTGATGCGCTACGCTTATCAGGCCTACAAGGTTTCTGCAATATATTGAATTAGCACGATTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGCGCACTTTTTTAACAGTTGTTGCTGCCGACAAATGCAGTATTTA > 2:5436816/1‑150 TGATGCGCTACGCTTATCAGGCCTACAAGGTTTCTGCAATATATTGAATTAGCTCGATTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGCGCACTTTTTTAACAGTTGTTGCTGCCGACAAATGCAGTATTTAA < 2:6356625/150‑1 TGATGCGCTACGCTTATCAGGCCTACAAGGTTTCTGCAATATATTGAATTAGCACGATTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGCGCACTTTTTTAACAGTTGTTGCTGCCGACAAATGCAGTATTTAA < 2:3037250/150‑1 TACGGCGTTTCCTCACGAAAATTAAATACTGCATTTGTCGGCAGCAACAACTGTTAAAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2538459‑2538614‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgatGCGCTACGCTTATCAGGCCTACAAGGTTTCTGCAATATATTGAATTAGCACGATTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGCGCACTTTTTTAACAGTTGTTGCTGCCGACAAATGCAGTATTTAA < NC_000913/2538625‑2538480 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |