| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 164,581 | A→C | 21.4% | intergenic (+47/‑149) | hrpB → / → mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 164,581 | 0 | A | C | 21.4% | 270.5 / 29.8 | 186 | intergenic (+47/‑149) | hrpB/mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| Reads supporting (aligned to +/- strand): ref base A (54/89); new base C (7/36); total (61/125) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.23e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 191 total aligned reads displayed.
CCGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCA > NC_000913/164432‑164730 | cGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCAt > 2:2130887/1‑150 (MQ=255) tGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCa > 2:5932491/1‑150 (MQ=255) tGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGAACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAgcgcg > 1:2544508/1‑150 (MQ=255) aaaaaGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATACGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCCGCGCGCAc > 2:5057127/1‑150 (MQ=255) agttaTGAAAGGGCTTTATCCCAAACATGTCTGGCCGGACGACCGGTAAAATACTGCACCGACGCGAGGTACTAAAATTTATTCGTATGGTTGTTTTTCTCCCTCTCCCTGTGGTTGTGGGCGGGGGTGCGGGCCTCAGCGCGCACGTtc < 2:480800/146‑1 (MQ=255) ataTGAAAGGGCTTTATCCCAAACATGTCGGGCCGGACGACCCGGAAAATACTGCACCGACGCGACGGACGAAAAAGTATTCTTAAGGTTGGTTTTCTCCCTCTCCCTGTGGTAGTGGGCGGGGGTGAGGGCATCAGCGCGCACGTtcac < 2:2887253/148‑1 (MQ=38) gaTGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGtggccc > 1:3761199/1‑145 (MQ=255) aTGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGtgggccc > 1:1290734/1‑144 (MQ=255) tGAAAGGGCTTTATCCAAAACATGTCTGGCCGGACGACCCGGAAAATACTGCACCGACGCTAGGGACTAAAAAGTTTTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGTTGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTtcaccct < 2:2386223/150‑1 (MQ=37) tGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGTgcccccc > 1:5274309/1‑149 (MQ=255) tGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGtggggccc > 2:1843656/1‑143 (MQ=255) aaGGGCGTTATCCCAAACATGTCTGGCGGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTTTTCGTAAGTTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGCCATCAGCGCGCACGTtcaccctcac < 2:2964667/150‑1 (MQ=255) cgggCGTTAACCCAACCCGGTCTGGCCGCCCGCCCCGCCAAATACGGCACCGAGGCGACGGACGAAAAAGTATTGGTACGGTTGTTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGGGAGGGCATCAGCGCGCACGTtcaccctcacc < 2:6237183/149‑1 (MQ=25) cGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGGGCCCGCACCCaaa > 1:270340/1‑150 (MQ=38) cGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGGACCCCCACCCaaa > 1:270325/1‑150 (MQ=255) ttATCCCAAACTTGTCGGGCGGGACGACCCGGCAAATCCTGCACCGACGCGAGGTACTAAAATGTTTTGTTATGTTTGTTTTTCTCCCTCGCCCTGTGGGTGTGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAAcc < 2:580982/150‑1 (MQ=25) ttATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTGAACCACACCCaaaac > 1:3008147/1‑148 (MQ=255) ttATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGCACCCGCACCCCAAcc > 1:5711868/1‑150 (MQ=255) cccAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCCGCGCGCACGTGCGCCCGCCCCCGAAccccca > 1:1996976/1‑147 (MQ=38) cccAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGGGCCCCCACCCCAAacccca > 2:3359900/1‑147 (MQ=37) ccAAACTTGTCGGGCGGGCCGACCGGGAAAATACTGCCCCGACGCGACGTACGAAAACGTATTGGTATGTTTGGTTTCCCCCCTCTCCGTGGGGGAGTGGGCGGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCtctc < 2:5116368/150‑1 (MQ=255) ccAAACTTGGCTGGCGGTCCCACCGGGAAATTACTGAACCGACGCTTCGTACTAAAATTTTTTCGTATTGTTGGTTTTCTCCCTCTCCGGGTGGGTGTGGGCGGGGGTGTGGGAATCAGCGCGCACGTTCACCCTCACCCTAACCCtctc < 2:1293006/150‑1 (MQ=255) ccAAACATGTGTGGCCGGACGCCCGGGCAAATACTGCACCGACGCGAGGTACTAAAAAGTTTTCGTTTGGTTGTTTTTCTCCCTCGCCGTGTGGTTGTGGGCGGGGGTGGGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCtctc < 2:3337083/150‑1 (MQ=255) ccAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGGGCCCACACCCGAAaccccac > 1:2895463/1‑146 (MQ=37) caaccctGTCTGGCCGGACGACCCGCCAAATCCGGCCCCGACGCGACGGACGAAACAGTTTTCGTTTGTTGGGTTTTCTCCCTCTCCCTGGGGGAGTGGGCCGGGGTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTcc < 2:6931764/144‑1 (MQ=255) cAAACTTGTGGGGCCGGACGACCCGGAAAATACTGCACCGACGCGCGGGACGAAAATTTATTCTAATGTTTGTTTTTCTCCGTCTCCGTGTGGGAGTGGGCGGGGGTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTcc < 2:2290772/150‑1 (MQ=255) cAAACATGTCTGGCCGGACGACCCGGCAAATACTGCCCCGACGCGACGGACGAACAAGTATTCGTAAGGTTGTTTTTCTCCCTCACCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTcc < 2:3784991/150‑1 (MQ=255) cAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCGCACCCAAAcccacacc > 2:7163482/1‑145 (MQ=255) aaaCATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGTGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGGGCCCCCACCCCAAaccacaacc > 2:2662183/1‑144 (MQ=37) aaaCATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCGCACCCAAACCCACAccc > 2:5869259/1‑150 (MQ=255) aaaCATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGCGCCCACACCCAAACCCACAccc > 1:1685777/1‑150 (MQ=38) tGTCTGGCCGGCCGACCCGGCAAATACTGCACCGCGGCGACGGACGAAAAAGTTGACGTACGTTTGGTTTTCTCCCTCTCCCTGGGGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAg < 2:6242503/150‑1 (MQ=38) tGTCTGGCCGGCCGACCCGCAAAATACCCCACCGCCGCGCCGCCCGAAAAAGTTTTCGAAGGGTGGGTTTCCTCCCTCTCCCTGTGGGTTTGGGCCGGGGTTAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAg < 2:6132617/150‑1 (MQ=255) tGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTAGTCGTATGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAg < 2:2308009/150‑1 (MQ=255) ggTCGGGCGGCACGACCCGGAAATTACTGCACCGACGCGACGGACGAAAAAGTTTTCGTACGTTTGTTTTTCACCCTCTCCCTGTGGGAGTGGGCGGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAg < 2:5182982/149‑1 (MQ=37) gtggggccggccGCCCCGACAAAAACTCCCCCGCCGCGCGGTACTAAATTTTTTTCGTAGGGTTGTTTTTCCCCCTCGCCCTGTGGGTGGGGGGGGGGGTGCGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAgg < 1:6804688/146‑1 (MQ=255) gTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCttgagg < 2:892051/150‑6 (MQ=255) ggccggccGCCCCGGAAAATCCGGCACCGCCGCGCCGGCCGAAAAAGTATTCGTACGGTTGGTTTTCTCCCTCTCCCTGGGGGTGTGGGCCGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGgaga < 1:6392803/150‑1 (MQ=255) ggccggccGACCCGGAAAATACTGCACCGCCGCGACGGACGAAATAGTATTCTTAAGGTTGGTTTTCTCCCACTCCCTGGGGTTGCGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGgaga < 2:2174896/150‑1 (MQ=255) gcccGGACCACCCGGCAAAGACTCCCCCGACGCGCGGGCCGAAAATGTTTTCTTATGGTTGGTTTTCTCCCCCTCCCTGGGGGTGAGGGCGGGGGTGCGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGgaga < 2:6771636/148‑1 (MQ=255) gccggccgACCCGGCAAATACTGCACCGACGCGCCGGACGAAAATGTTTTCGTATGGTTGGTTTTCTCCCCCCCCCTGTGGGAGAGGGCGGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGagag < 2:5154517/150‑1 (MQ=255) gCCGGACGCCCCGGCAAACACGGCCCCGCCGCGACGGCCGAAAAAGTTTTCGTAAGGTTGGTTTTCTCCCTCCCCCTGTGGTCTAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGagag < 2:5154713/150‑1 (MQ=37) cGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGGACCCACCCCCGAACACCCACCCCCACGgggggggg > 1:4962556/1‑150 (MQ=25) ggACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGCCCCCAAACCCAAAACCAAAACCACAACGGAGAgggg > 2:4105849/1‑150 (MQ=25) gacgacCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGGAAGGGTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGCACCCGCCCCCAAAACCACACCCCCAACGGCGAGGGGa > 2:1699595/1‑150 (MQ=25) ccgacCCTCCAAATACCCCACCGACGCGCCGGACAAAATAGTTTTCGTATGTTTGGTTTTCCCCCCCTCCCTGGGGTAGCGGGCCGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTTGAGGGAGAgggtta < 1:767108/149‑4 (MQ=255) acgacCCGGCAAATACTGCACCGACGCGACGGACTAAAAAGTTTTCGTAAGGTTGTTTTTCTCCCTCTCCCTGTGGGAGTGGGCCGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGAc < 2:4016664/150‑1 (MQ=39) ctacCCGGAAAATACTGCCCCGACGGTAGGGACTAAAATTTTTTGTTATGGTTGTTTTGCTCCCTCTGCGTGTGGGTTTGGGCGGGGTTGCGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGAcc < 1:4165252/148‑1 (MQ=255) gacCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCCGCGCGCACGTGGGCCCCCACCCAAAACCACACCCACAACGGAGGCGGGGCCg > 1:6054994/1‑150 (MQ=25) acCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCCCACCCCAACCCACACCCACAACGGCGCGGGGGccca > 2:5252051/1‑148 (MQ=37) ccGGCAAAGACTGCACCGACGCGACGTACGAAAAAGTATGCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCCGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATc < 2:6577497/150‑1 (MQ=255) gCACGGACGCGACGGACGAAAATGTTTTCTTTCGTTTGGTTTTCTCCCTCTCCCTGTGGGAGTGGGCCGGGGTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAAttt < 1:5409374/150‑1 (MQ=37) cACCGCCGCGACGCACGAAAACGTATTCGTACGGTTGGTTTTCTCCCTCTCCCTGTGGGTGCGGGCCGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAAtttt < 2:6848919/150‑1 (MQ=38) aCCTACGCTACGGACGAAAATGTATTCTTATGGTTGGTTTTCTCCCGCTCCCTTTGGTTGAGGGCCGGGGTTTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGTACCGATCGAGCACAAATTTTg < 1:3943243/150‑1 (MQ=255) cccccgcgccgCACTAAAAAGTATGCTTAAGGTTTTTTTACGCCCTCCCGTGGGGGGTGAGGGGGGGGTTGCGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTga < 1:1302730/146‑1 (MQ=255) ccGAGGCGACTGTCGAAAATGTTTTGGTAGGGTTGGTTTTCGCCCCCGCGGGGGGGGTGTGGGCGGGGGTGTGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTga < 1:4385780/150‑1 (MQ=255) ccGACGCGCCGGACCAAAAAGTATGCGTACGGTTGGTTTTCTCCCTCGCCCTGTGGGAGTGGGCCGGGGTGGGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTga < 1:6508618/150‑1 (MQ=255) ccGACGCGACGGACGAAAATGTATTCGTTAGGTTGGTTTTCTCCCTCGCCCTGGGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTga < 1:7072439/150‑1 (MQ=255) cgacgcgacgGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCAGCCGCGCGCACGTGCACCCCCACCCAAACCCACTCCCACAAGGGGGAGGGGGCCGATCGAGCCCACAATTTgag > 2:5947370/1‑150 (MQ=37) gacgcgacgGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGGGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTgaga < 2:804064/150‑1 (MQ=255) gacggacgAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCCGCGCGCACGTGGGCCCCCACCCAAACCCCCTACCCCACAGGCGAGGGGGCCGATCGAGCCCAAAATTTTAGGGaaat > 2:1595694/1‑150 (MQ=21) ccggactAAAATTTTTTCGTTAGGTTGGTTTTCCCCCTCCCCGGGGGGGTGTGGGCGGGGGTGCGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATAtc < 1:1569227/149‑1 (MQ=255) gactAAAATTTATTGGTTTGGTTGTTTTTCTCCCTCCCCCTGTGGGTGTGGGCGGGGGTGAGGGCATCAGCGCGCACGGTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATAtcttc < 1:1157855/150‑1 (MQ=37) aaaatGTATTCTTAAGTTTGGTTTACTCCAACTCCCTGTGGGAGTGGGCCGGGGTGCGGGAATCAGCGCGAACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATAtcttcttct < 2:713498/150‑1 (MQ=255) aagaactCGTACGGTGGTATTACTCCCTCGCCGTGTGGGTGAGGGCCGTGTTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCATGGGTGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTc < 1:5159745/144‑1 (MQ=255) tttttCGTATGGTTGGTTTTCTCCCTCTCCGTGTGGGTGTGGGCGGGGGTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCtt < 2:4989802/147‑1 (MQ=255) ttATTCGTATGTTTGGTTTCCACCCTCTCCCTGTGGGATGGGGCCGGGGTGCGGCCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCtt < 1:5877418/149‑1 (MQ=255) gttttCGTTGGGTGGGTTTTCTCCCTCGCCCTGGGGGCGGGGGGGGGGGTGTGGGCATCCGCGCGCACGTGCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCtt < 1:925509/147‑1 (MQ=255) gTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCGCACCCAAAACCACACCCAACAGGGAGCGGGGGCCCAGCGAGCCCCAAAATTGAGAGATATAATATTCTGTGtt > 2:3472963/1‑150 (MQ=16) tATTCTTATGGTTGTTTGTCTCCCTCTCCCTGTGGGTGTGGGCGGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTg < 1:6831894/150‑1 (MQ=39) aTTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGCACCCTCACCCGAACCCACACCCTCCAGGGGGAGGGGGCCGATCGAGCACAAAATTTGAGGTCTATCTTATTATGTCTTGt > 2:4542438/1‑150 (MQ=25) aTTCGTAAGGTTGGTTTTCTCCCTCTCCCTCTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTGACCCACAACCAAAACCAATCACGAAAACGGGAGGGGGCCGATAGAGCCCAAAATTTGTGAGATATATTATTCTGTGtttt > 2:5848903/1‑148 (MQ=12) tcttttggttgtttTTCCCCCCCTCCCTGTGGTCTGGGGCGGGGGTGCGGGCCTCAGCGCGCACGGTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTaa < 1:4872354/144‑1 (MQ=255) tcttatggttggttTGCTCCCTCCCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTaa < 1:6372632/144‑1 (MQ=255) tCGTATGTTTGGTTTCCTCCCTCTCCCTGTGGGTGTGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTaa < 1:5962616/150‑1 (MQ=39) tCGTACGGTTGGTTTTCTCCCTCTCCCGGTGGGCGTGGGCCGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTaa < 1:6617035/150‑1 (MQ=255) tggttggttTTCTCCCTCTCCGTGGGGGAGGGGGCGGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACagaa < 1:2381360/149‑1 (MQ=255) gtggttTTCGCCCTCCCCCTGGGGGATCGGGCGGGGGTGGGGCCCTCAGCGCGCACGTTCACCCTCCCCCTACCCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAgaagaa < 2:1486967/149‑1 (MQ=255) tggttTTCCCCCCCTCCCTGGGGGAGCGGGCCGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAAc < 2:5689461/150‑1 (MQ=255) gtttttCTCCCTCTCCCTGGGGGTGTGGGCGGGGTTGAGGGCATCAGCGCGCACGGTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACa < 1:5634999/148‑1 (MQ=255) gttttgCTCCCCCGCCGTGTGGGTGTGGGCGGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACa < 2:2794412/148‑1 (MQ=255) ttttCTCCCTCTCCCTGTGGGTGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGa < 2:1094025/150‑1 (MQ=255) ccctctccctGTGGGAGAGGGCCGGGGTGAGGGCAGCAGCGCGCACGGGCACCCCCCCCCGAAACCTCGCCCGCAAGGGCGGGGGGGCCGCTCGCGCCCACAGTTTGAGAGATATCTTCGTCTGGCGTGTAACAGCAGCACAGAAAAACg > 2:5346661/1‑150 (MQ=16) ccctctccctGGGGGTGAGGGCCGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCg < 1:7031549/150‑1 (MQ=255) cccactccctGGGGGAGAGGGCCGGGGGGAGGGCATCAGCGCGCACGGTCACCCTCACCCTACCCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCg < 1:1154335/150‑1 (MQ=255) cctctccctGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCGCCCACACCCGGACCCTCTCCCTCAAGGGGGTGGGGACCGAGCGGGCGCAAAATTTGGGGGATATCTTGTTATGTGTTGTGAAAGACGTGCAGTAAATAgg > 2:7144613/1‑150 (MQ=16) cccctcccgGTGGGTGTGGGCGGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCgg < 1:5843845/147‑1 (MQ=255) ctGTGGGTGGGGGCGGGGGTGAGGCCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTg < 1:5013843/150‑1 (MQ=255) gggcgcgggCCGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGcc < 1:764362/144‑1 (MQ=255) gggCGAGGGCCGGGGTGAGGGCCTCAGCGCGCCCATGCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGAGCGAGCACAACTTTTGAGAGATATCTTCTTCTGTCTAGTAACAGAAGAACAGAAAATCGGGCTTTTGCGcc < 1:2148265/150‑1 (MQ=255) ggtgtgggCGGGGGTGCGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCt < 1:6721122/145‑1 (MQ=255) gcgggCCGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATGTCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGaa < 1:3269573/148‑1 (MQ=255) cgggggggCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTg < 2:2544508/148‑1 (MQ=255) cGGGGTGCGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGc < 1:3997103/150‑1 (MQ=255) ggggTGCGGGCCTCAGCGCGCACGGTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCg < 1:373276/150‑1 (MQ=255) gggTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCACAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGAGAACTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCgg < 1:1803394/150‑1 (MQ=255) gggCATCAGCGCGCACGTTCACCCACACACAAACCCTAACCCACCACGGCCAGGGGACCGATCCAGCACCAAATTTTAGAGATATAATCATATGTCTTTTAACAAAAGAAAAGAAAAAAGGGCGTTTGCGCCGGAATATTTCGGAGaaaa > 2:3461702/1‑150 (MQ=255) ggCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGaaaaa < 1:5070034/150‑1 (MQ=255) aTCAGCGCGCACGTTCACCCACAACCAAAACCAAACCCACCAGGGAGAGGGGGCCCATCGAGCACAAAATTTTAGATATAAATAAATATGTCTTGTAAAAAAAAAACACAAAAACGGGCTTTTTCGCCAGAATAATGCGGAGCAAAAACa > 2:3061351/1‑150 (MQ=255) aTCAGCGCGCACGTTCACCCAAACCCAAAACCAAAACCTCAAGGGAGAGGGGACCCATAGATCACAAAATTTGATATATATATTATTAAGTCTTTTAACAGAAGAACAGCAAAACGGGCTTTTTCGCCGGAAAAATTCGGGGAAAAAGCa > 2:4682484/1‑150 (MQ=255) | CCGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCA > NC_000913/164432‑164730 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |