New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4425435	115 (0.930)	3 (0.030)	3/266	NT	2.5%	coding (318/396 nt)	rpsF	30S ribosomal subunit protein S6
	?	NC_000913	= 4425461	124 (1.050)					coding (344/396 nt)	rpsF	30S ribosomal subunit protein S6
Rejected: Frequency below/above cutoff threshold.

ACAAAGCACACTACGTTCTGATGAATGTTGAAGCTCCGCAGGAAGTGATCGATGAGCTGGAAACTACCTTCCGCTTCAACGATGCCGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4425281‑4425435 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgaaaTCATCGCGACGCTCACGGCGCTCGTCTTTCGCTTTAACCATCGGAGATGCTTCGGTAACAGCGTGCTTGGTACGCATAACCATGCTGCGGATAACGGCATCGTTGAAGCGGAAGGTAGTTTCCAGCTCATCGATCACTTCCTGCGGAG  <  NC_000913/4425461‑4425314                                                                                                                                                                                                                                                                                                                 ACAAAGCACACTACGTTCTGATGAATGTTGAAGCTCCGCAGGAAGTGATCGATGAGCTGGAAACTACCTTCCGCTTCAACGATGCCGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAG                                                                                                                                                           <  1:1425271/150‑1    acGCACACTACGTTCTTATGAATGTTGAAGCTCCGCAGGAAGTGATCGATGAGCTGGAAACTACCTTCCGCTTCAACGATGCCGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTTAAGCGA                                                                                                                                                        <  2:1283595/148‑1     AGCACACTACGTTCTGATGAATGTTGAAGCTCCGCAGGAAGTGATCGATGAGCTGGAAACTACCTTCCGCTTCAACGATGCCGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAA                                                                                                                                                       <  1:1799109/150‑1     AGCACACTACGTTCTGATGAATGTTGAAGCTCCGCAGGAAGTGATCGATGAGCTGGAAACTACCTTCCGCTTCAACGATGCCGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAA                                                                                                                                                       <  2:1479092/150‑1      GCACACTACGTTCTGATGAATGTTGAAGCTCCGCAGGAAGTGATCGATGAGCTGGAAACTACCTTCCGCTTCAACGATGCCGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAA                                                                                                                                                      <  1:1939964/150‑1      GCACACTACGTTCTGATGAATGTTGAAGCTCCGCAGGAAGTGATCGATGAGCTGGAAACTACCTTCCGCTTCAACGATGCCGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAA                                                                                                                                                      <  2:1075096/150‑1                                         GGAAGTGATCGATGAGCTGGAAACTACCTTCCGCTTCAACGATGCCGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAATCATCGCGACGCTCACGGCGCTCGTCTTTCGCTTT                                                                                                                   <  2:1919176/150‑1                                               tATCGATGATCTGGAAACTACCTTCCGCTTCAACGATGCCGTTATCCGCAGCCTGGTTATGCGTACCAAGCACGCTGTTACCGTAGCATCTCCGATGGTTAAAGCGAAATCATCGCGACGCTCACGGCGCTCGTCTTTCGCTTTAACCAT                                                                                                             <  2:1073078/149‑1                                                                     TTCCGCTTCAACGATGCCGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAATCATCGCGACGCTCACGGCGCTCGTCTTTCGCTTTAACCATCGGAGATGCTTCGGTAACAGCG                                                                                       <  2:954196/150‑1                                                                                                                                                      GCGAAATCATCGCGACGCTCACGGCGCTCGTCTTTCGCTTTAACCATCGGAGATGCTTCGGTAACAGCGTGCTTGGTACGCATAACCATGCTGCGGATAACGGCATCGTTGAAGCGGAAGGTAGTTTCCAGCTCATCGATCACTTCCTGC      <  2:1055463/150‑1                                                                                                                                                      GCGAAATCATCGCGACGCTCACGGCGCTCGTCTTTCGCTTTAACCATCGGAGATGCTTCGGTAACAGCGTGCTTGGTACGCATAACCATGCTGCGGATAACGGCATCGTTGAAGCGGAAGGTAGTTTCCAGCTCATCGATCACTTCCTGC      >  2:249498/1‑150                                                                                                                                                      GCGAAATCATCGCGACGCTCACGGCGCTCGTCTTTCGCTTTAACCATCGGAGATGCTTCGGTAACAGCGTGATTGGTACGCATAACCATGCTGCGGATAACGGCATCGTTGAAGCGGAAGGTAGTTTCAAGCTCATCGATCACTTCCTGC      >  2:1407129/1‑150                                                                                                                                                      GCGAAATCATCGCGACGCTCACGGCGCTCGTCTTTCGCTTTAACAATCGGAGATGCTTCGGTAACAGCGTGCTTGGTACGCATAACCATGATGCGGATAACGGCCTCGTTGAAGCGGATGGTAGTTTCCAGCTCATCGATCACTTCCTGC      >  1:1843134/1‑150                                                                                                                                                      GCGAAATCATCGCGACGCTCACGGCGCTCGGCTTTCGCTTTAACCATCGGAGATGCTTCGGTAACAGCGTGCTTGGTACGCATAACCATGCTGCGGATAACGGCATCGTTGAAGCGGAAGGTAGTTTCCAGCTCATCGATCACTTCCTGC      <  1:423926/150‑1                                                                                                                                                       CGAAATCATCGCGACGCTCACGGCGCTCGTCTTTCGCTTTAACCATCGGAGATGCTTCGGTAACAGCGTGCTTGGTACGCATAACCATGCTGCGGATAACGGCATCGTTGAAGCGGAAGGTAGTTTCCAGCTCATCGATCACTTCCTGCG     >  2:1987921/1‑150                                                                                                                                                       CGAAATCATCGCGAAGCGCACGGCGCTCGTCTTTCGCTTTAACCATCGGAGATGCTTCTGTAACAGCGTGCTTGGTACGCATTACCATGCTGCGGATAACGGCATCGTTGAAGCGTAAGGTAGTTTCCATCTCATCGATGACTTCCTGCG     <  2:1319622/150‑1                                                                                                                                                        GAAATCATCGCGACGCTCACGGCGCTCGGCTTTCGCTTTAACCATCGGAGATGCTTCGGTAACAGCGTGCTTGGTACGCATAACCATGCTGCGGATAACGGCATCGTTGAAGCGGAAGGTAGTTTCCAGCTCATCGATCACTTCCTGCGG    <  1:1779152/150‑1                                                                                                                                                          AATCATCGCGACGCTCACGGCGCTCGGCTTTCGCTTAAACCCTCGGAGATGCTTCGGTAACAGCGTGCTTGGTACGCATAACCATGCTGCGGATAACGGCATCGTTGAAGCGGAAGGTAGTTTCCAGCTCATCGATCACTTCCTGCGGAG  <  2:198325/150‑1                                                                                                                                                                                                                                                                                                                 ACAAAGCACACTACGTTCTGATGAATGTTGAAGCTCCGCAGGAAGTGATCGATGAGCTGGAAACTACCTTCCGCTTCAACGATGCCGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4425281‑4425435 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgaaaTCATCGCGACGCTCACGGCGCTCGTCTTTCGCTTTAACCATCGGAGATGCTTCGGTAACAGCGTGCTTGGTACGCATAACCATGCTGCGGATAACGGCATCGTTGAAGCGGAAGGTAGTTTCCAGCTCATCGATCACTTCCTGCGGAG  <  NC_000913/4425461‑4425314

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.