| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4528019 = | 126 (1.020) | 3 (0.030) | 3/262 | NT | 2.5% | noncoding (43/90 nt) | ryjB | novel sRNA, function unknown |
| ? | NC_000913 | 4528061 = | 115 (0.990) | noncoding (85/90 nt) | ryjB | novel sRNA, function unknown | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CCAATTTCGTTGACCAGGCGCGAGTCAGTCAGTTTATGGAGAAAGTGCATCATATACGCCGATAAGATGGGGATAAGCAGAGCGCTTATCCCCGGCAAAGAGCAATAACCCTTCTGCGATCCCTGCCGCCTTCGTCAAAAGTATCGACGGGGATCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4528175‑4528019‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggatcgcAGAAGGGTTATTGCTCTTTGCCGGGGATAAGCGCTCTGCTTATCCCCATCTTATCGGCGTATATGATGCACTTTCTCCATAAACTGACTGACTCGCGCCTGGTCAACGAAATTGGCAAAAACGCCGTCCTTTTTAAAGGTGGTTGCGGT > NC_000913/4528061‑4528209 CCAATTTCGTTGACCAGTCGCGAGTCAGTCAGTTAATGGAGAAAGTGCATCATATACGCCGATAAGATGGGGATAAGCAGAGCGCTTATCACCGGCAAAGAGCAATAACCCTTCTGCGATCCCTGCCGCCTTCGTCAAAAGTATCGACGG > 2:1000476/1‑150CCAATTTCGTTGACCAGGCGCGAGTCAGTCAGTTTATGGAGAAAGTGCATCATATACGCCGATAAGATGGGGATAAGCAGAGCGCTTATCCCCGGCAAAGAGCAATAACCCTTCTGCGATCCCTGCCGCCTTCGTCAAAAGTATCGACGG < 1:10175/150‑1CCAATTTCGTTGACCAGGCGCGAGTCAGTCAGTTTATGGAGAAAGTGCATCATATACGCCGATAAGATGGGGATAAGCAGAGCGCTTATCCCCGGCAAAGAGCAATAACCCTTCTGCGATCCCTGCCGCCTTCGTCAAAAGTATCGACGG > 1:1292967/1‑150CCAATTTCGTTGACCAGGCGCGAGTCAGTCAGTTTATGGAGAAAGTGCATCATATACGCCGATAAGATGGGGATAAGCAGAGCGCTTATCCCCGGCAAAGAGCAATAACCCTTCTGCGATCCCTGCCGCCTTCGTCAAAAGTATCGACGG < 2:101301/150‑1 CAATTTCGTTGACCAGGCGCGAGTCAGTCAGTTTATGGAGAAAGTGCATCATATACGCCGATAAGATGGGGATAAGCAGAGCGCTTATCCCCGGCAAAGAGCAATAACCCTTCTGCGATCCCTGCCGCCTTCGTCAAACGTATCGACGGG > 2:446843/1‑150 CAATTTCGTTGACCAGGCGCGAGTCAGTCAGTTTATGGAGAAAGTGCATCATATACGCCGATAAGATGGGGATAAGCAGAGCGCTTATCCCCGGCAAAGAGCAATAACCCTTCTGCGATCCCTGCCGCCTTCGTCAAAAGTATCGACGGG > 1:1050003/1‑150 CAATTTCGTTGACCAGGCGCGAGTCAGTCAGTTTATGGAGAAAGTGCATCATATACGCCGATAAGATGGGGATAAGCAGAGCGCTTATCCCCGGCAAAGAGCAATAACCCTTCTGCGATCCCTGCCGCCTTCGTCAAAAGTATCGACGGG > 2:1742142/1‑150 CAATTTCGTTGACCAGGCGCGAGTCAGTCAGTTTATGGAGAAAGTGCATCATATACGCCGATAAGATGGGGATAAGCAGAGCGCTTATCCCCGGCAAAGAGCAATAACCCTTCTGCGATCCCTGCCGCCTTCGTCAAAAGTATCGACGGG < 2:1432610/150‑1 AATTTCGTTGACCAGGCGCGAGTCAGTCAGTTTATGGAGAAAGTGCATCATATACGCCGATAAGATGGGGATAAGCAGAGCGCTTATCCCCGGCAAAGAGCAATAACCCTTCTGCGATCCCTGCCGCCTTCGTCAAAAGTATCGACGGGG < 1:503369/150‑1 TTCGTTGACCAGGCGCGAGTCAGTCAGTTTATGGAGAAAGTGCATCATATACGCCGATAAGATGGGGATAAGCAGAGCGCTTATCCCCGGCAAAGAGCAATAACCCTTCTGCGATCCCTGCCGCCTTCGTCAAAAGTATCGACGGGGATC < 2:1652815/150‑1 TTCGTAGACCATGCCCGAGTCAGTCAGTTACTGGAGAAAGTTCCACATATACGCCGATAAGATGGGGATAAGCAGAGCGCTTATGCCCGGCAAAGAGCAATAACCCTTCTGCGATCCCTGCCGCCTTCGTCAAAAGTCTCGACGGGGATC < 2:2000235/150‑1 TCGTTGACCAGGCGCGAGTCAGTCAGTTTATGGAGAAAGTGCATCATATACGCCGATAAGATGGGGATAAGCAGAGCGCTTATCCCCGGCAAAGAGCAATAACCCTTCTGCGATCCCTGCCGCCTTCGTCAAAAGTATCGACGGGGATCG > 1:1832623/1‑150 CAATAACCCTTCTGCGATCCCTGCCGCCTTAGTCAAAAGTATCGACGGGGATCGCGGAAGGGTTATTGCTCTTTGCCGGGGATAAGCGCGCTGCTTATCCCCATCTTATCGGCGTATATGATGCACTTTCTCCATAAACTGACTGCCTCG > 1:1328450/1‑150 CTTCTGCGATCCCTGCCGCCTTCGTCAAAAGTATCGACGGGGATCGCAGAAGGGTTATTGCTCTTTGCCGGGGATAAGCGCTCTGCTTATCCCCATCTTATCGGCGTATATGATGCACTTTCTCCATAAACTGACTGACTCGCGCCTGGT > 2:1578623/1‑150 GCGATCCCTGCCGCCTTCGTCAAAAGTATCGACGGGGATCGCAGAAGGGTTATTGCTCTTTGCCGGGGATAAGCGCTCTGCTTATCCCCATCTTATCGGCGTATATGATGAACTTTCTCCATTAACTGACTGACTCGCGCCTGGTCAACG > 2:1049761/1‑150 GGATCGCAGAAGGGTTATTGCTCTTTGCCGGGGATAAGCGCTCTGCTTATCCCCATCTTATCGGCGTATATGATGCACTTTCTCCATAAACTGACTGACTCGCGCCTGGTCAACGAAATTGGCAAAAACGCCGTCCTTTTTAAAGGTGGT > 1:1636840/1‑150 GATCGCAGAAGGGTTATTGCTCTTTGCCGGGGATAAGCGCTCTGCTTATCCCCATCTTATCGGCGTATATGATGCACTTTCTCCATAAACTGACTGACTCGCGCCTGGTCAACGAAATTGGCAAAAACGCCGTCCTTTTTAAAGGTGGTT > 1:703551/1‑150 TCGCAGAAGGGGTATTGCTCTTTGCCGGGGATAAGCGCTCTGCTTATCCCCATCTTATCGGCGTATATGATTCACTTTCTCCATAAACTGACTGACTCGCGCCTGTTCAACGTAATTGGCAAAAACGCCGTCCTTTTTAAAGGTGGTTGC < 1:1177130/150‑1 CAGAAGGGTTATTGCTCTTTGCCGGGGATAAGCGCTCTGCTTATCCCCATCTTATCGGCGTATATGATGCACTTTCTCCATAAACTGACTGACTCGCGCCTGGTCAACGAAATTGGCAAAAACGCCGTCCTTTTTAAAGGTGGTTGCGGT > 2:866715/1‑150 CCAATTTCGTTGACCAGGCGCGAGTCAGTCAGTTTATGGAGAAAGTGCATCATATACGCCGATAAGATGGGGATAAGCAGAGCGCTTATCCCCGGCAAAGAGCAATAACCCTTCTGCGATCCCTGCCGCCTTCGTCAAAAGTATCGACGGGGATCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4528175‑4528019‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggatcgcAGAAGGGTTATTGCTCTTTGCCGGGGATAAGCGCTCTGCTTATCCCCATCTTATCGGCGTATATGATGCACTTTCTCCATAAACTGACTGACTCGCGCCTGGTCAACGAAATTGGCAAAAACGCCGTCCTTTTTAAAGGTGGTTGCGGT > NC_000913/4528061‑4528209 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |