New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2947575	3 (0.020)	5 (0.060) +TATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCC	5/194	NT	9.6%	intergenic (+2/‑32)	metW/metV	tRNA‑Met/tRNA‑Met
	?	NC_000913	= 2947757	133 (1.080)					coding (1254/1254 nt)	amiC	N‑acetylmuramoyl‑L‑alanine amidase

AAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAATTTGATGAAGTAAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCT  >  NC_000913/2947467‑2947724                                                                                                             |                                                                                                                                                      aaaaTTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATtattgaacaccctaacgggtgtttttttgtttctggtctcc                                                                                                              >  2:1919424‑M1/1‑109 (MQ=255)       tgatgaAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATgatagaacagcctttcgggggttttgttgtttcggggctcccataaa                                                                                                        >  1:390419‑M1/1‑103 (MQ=255)        gatgaAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTAGGTTCAAATCCGGCCCCCGCAACCAATtattgaacaacatatagggtgtttattttttactggtctcccataaaa                                                                                                       >  2:1230524‑M1/1‑102 (MQ=255)         atgaAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATtaatgtacaccctaactgcggttttattgttgctgggctcccaaaaaaa                                                                                                      >  1:52746‑M1/1‑101 (MQ=255)           gaAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATtattgaac                                                                                                                                               >  2:1720212‑M1/1‑99 (MQ=255)           gaAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATtattgaac                                                                                                                                               <  1:1720212‑M1/107‑9 (MQ=255)             aGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATtattgaacaccctaacgggtgtgtatttgtttcgggtctccaataaaaacgcc                                                                                                  >  1:1893881‑M1/1‑97 (MQ=255)                                         agcagcCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATtattgaacaccctaacgggtgtttttttgtttct                                                                                                                     >  1:1380282‑M1/1‑69 (MQ=255)                                         agcagcCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATtattgaacaccctaacgggtgtttttttgtttct                                                                                                                     <  2:1380282‑M1/103‑35 (MQ=255)                                         agcagcCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAATTTGATGAAGTAAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGGCGGGCTCATAACCCGAAGgtcg                                                                      >  1:1602708/1‑150 (MQ=255)                                                                     aCCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATtattgaacaccctaacgggtgtttttttgtttctggtctcccataaaaaggcgctgaatggcgcttttttatg                                                                              <  1:228953‑M1/114‑74 (MQ=255)                                                                     aCCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATtattgaacaccctaacgggtgtttttttgtttctggtctcccataaaaaggcgctgaatggcgcttttttatg                                                                              >  2:228953‑M1/1‑41 (MQ=255)                                                                       ccGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATGATTTTTCAACAAGTAAAAGCAGTAAGGTGAAGAGGGGTGCAAAAGACAGGTAGCTCGTCGCGCTCATAAAAAGAACGTATTAGGATCAAATCCCGCCCCCGCAACAAatt                                        >  2:1898050/1‑150 (MQ=9)                                                                                              ggCCCCCGCAACCAATCAAATTTGATGAAGTAAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATACCCCGAAGGTCGGCGGGTCAACTCCGGCCCCCGCCCCCAATTATTGAACACCCAAACGGGTCttt                 >  2:1816584/1‑150 (MQ=17)                                                                                                          cAATCAAATTTGAGGAAGTAACAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGGCGGTTCAAAACCGGCCCCCGCAACCAAATATTGAACACCCTACCGGGGGTTTTTTTGTTTCTgt     >  2:308288/1‑149 (MQ=18)                                                                                                           aaTCAAATTTGATGAAGTAAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGt    >  2:763950/1‑150 (MQ=255)                                                                                                            aTCAAATTTGATGAAGTAAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGtc   >  2:982591/1‑150 (MQ=255)                                                                                                             tCAAATTTGATGAAGTAAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTATTTGTTTCTGGtct  >  1:1179014/1‑150 (MQ=255)                                                                                                             |                                                                                                                                                      AAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAATTTGATGAAGTAAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCT  >  NC_000913/2947467‑2947724

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.