New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4542682 =105 (0.850)16 (0.140) 15/260 NT 13.4% intergenic (+49/‑433) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
?NC_000913 4542996 = 109 (0.940)intergenic (+363/‑119) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)

Only 100 of 164 total aligned reads displayed.

CCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGC  >  NC_000913/4542534‑4542831
                                                                                                                                                    |                                                                                                                                                     
 caacgattgccagagttttaattttcatgctgctttcctttcaaaaaactatttctaaatcgacatgggcagtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTg                                                                                                                                                     >  2:1733717‑M1/148‑150 (MQ=255)
 aatcgattgccagagttttaattttcatgctgctttcctttcaaaaatctatttctaaatcgacatgggcagtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTg                                                                                                                                                     >  2:823102‑M1/148‑150 (MQ=255)
   tACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGG                                                                                                                                                   >  1:1397573‑M1/1‑150 (MQ=255)
   acgcttgccagacttttaattttcatgctgctttcctttcaatatactatttctaaatcgacatgggcagtcgttctgtacactttgttttgtaaacgagtttgactggcaacagttcacagttttcccccaaaagatgaaacatTTggg                                                                                                                                                   >  2:555483‑M1/146‑150 (MQ=255)
   acgattgccagagttttaattttcatgctgctttcctttcaaaaaactatttctaaatcgacatgggcagtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTggg                                                                                                                                                   >  1:138694‑M1/146‑150 (MQ=255)
    cgattgccagagttttaattttcatgctgctttcctttcaaaaaactatttctaaatcgacatgggcagtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTgggg                                                                                                                                                  >  1:1033687‑M1/145‑150 (MQ=255)
    cgattgccagagttttaattttcatgctgctttcctttcaaaaaactatttctaaatcgacatgggcagtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTgggg                                                                                                                                                  >  2:1682553‑M1/145‑150 (MQ=255)
    acttttagttataccGCCAGTAATGCTGCTCTTTTTTCCGTATTATGGGAAATAAATAATCTCATAAACGAAAAAATAAAAATAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGG                                                                                                                                                  <  1:1819750‑M1/143‑1 (MQ=255)
    aCTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGG                                                                                                                                                  >  2:1541856‑M1/1‑150 (MQ=255)
    aCTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGAAAATTGGGG                                                                                                                                                  >  1:331633‑M1/1‑150 (MQ=255)
        tgCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATTAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCaa                                                                                                                                              >  1:130964/1‑150 (MQ=255)
        tgCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCaa                                                                                                                                              >  1:71775/1‑150 (MQ=255)
         gCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAtt                                                                                                                                             >  1:1662114‑M1/1‑148 (MQ=255)
          ccagagttttaaatttcatgctgctttcctttcataaaactatttctaaatcgacatgggcaggcgttctgtccactttgttttgtaaacgagtttgactgccaacactgcacagttttccgcctaaagatgcatcatTTGCGGCCAAAc                                                                                                                                            <  2:1109737‑M1/12‑1 (MQ=255)
          cGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAAc                                                                                                                                            <  2:813468/150‑1 (MQ=255)
           tttaTACCGCCAGTAATGCTGCTCGGTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGTCCAtttt                                                                                                                                           <  2:1062593‑M1/149‑5 (MQ=255)
              ataCCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTc                                                                                                                                        <  1:1911946/150‑1 (MQ=255)
               taCCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACTAGACAATTGGGGCCAttttgact                                                                                                                                       >  2:1646557‑M1/1‑142 (MQ=255)
               taCCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTcc                                                                                                                                       <  2:274951/150‑1 (MQ=255)
                ttttaattttcatgctgctttcctttcaaaaaactatttctaaatcgacatgggcagtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCa                                                                                                                                      >  1:1599683‑M1/133‑150 (MQ=255)
                 ccGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCat                                                                                                                                     <  2:1200161/150‑1 (MQ=255)
                     cAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATACACGAAAACTTAAAAAGTGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCa                                                                                                                                 <  2:1107805/150‑1 (MQ=255)
                      aGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACTAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCat                                                                                                                                <  1:634550/150‑1 (MQ=255)
                      aGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCat                                                                                                                                <  1:1834250/150‑1 (MQ=255)
                       gTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCata                                                                                                                               <  1:2077966/150‑1 (MQ=255)
                       gTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCata                                                                                                                               <  1:2054609/150‑1 (MQ=255)
                       gTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAAAAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCata                                                                                                                               <  2:1975700/150‑1 (MQ=255)
                            gctgctCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataaataa                                                                                                                          <  1:1915198/150‑1 (MQ=255)
                              tgctCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGt                                                                                                                        >  2:1297785/1‑150 (MQ=255)
                               tgctttcctttcaaaaaactatttcaaaatcgacatgggcagtcgttctttaaactttgttttgtaaacgagtttgactgcctacactgcacagttttcccccaaaagttgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGtt                                                                                                                       >  1:1365962‑M1/118‑150 (MQ=255)
                               gctCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatc                                                                                                                       >  2:1569987‑M1/1‑126 (MQ=255)
                                gctttcctttcaaaaaactatttctaaatcgacatgggcagtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTa                                                                                                                      <  1:1902874‑M1/34‑1 (MQ=255)
                                gctttcctttcaaaaaactatttctaaatcgacatgggcagtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTa                                                                                                                      >  2:1366983‑M1/117‑150 (MQ=255)
                                ctCGTTTTGCCGGATTATGTGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTa                                                                                                                      <  1:796390/150‑1 (MQ=255)
                                  cGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACg                                                                                                                    >  2:1245989/1‑150 (MQ=255)
                                  cGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACg                                                                                                                    <  2:295828/150‑1 (MQ=255)
                                   gTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGt                                                                                                                   >  1:1324065/1‑150 (MQ=255)
                                        gCCGGATTATAGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtttt                                                                                                              >  1:178921/1‑150 (MQ=255)
                                            taTTATGGGAAAGAAATAATCTCATAAACTAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtct                                                                                                          <  2:2083842/149‑1 (MQ=255)
                                            gATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtct                                                                                                          <  2:1666973/150‑1 (MQ=255)
                                              ttATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCa                                                                                                        <  1:32236/150‑1 (MQ=255)
                                                aTGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAg                                                                                                      <  2:710938/150‑1 (MQ=255)
                                                 tGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAga                                                                                                     >  1:952159/1‑149 (MQ=255)
                                                 tGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCAATATCATAAATAAGTTACGTATTTTTTCTCAAga                                                                                                     >  1:1073089/1‑149 (MQ=255)
                                                  gggAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCa                                                                                                    >  2:170152/1‑150 (MQ=255)
                                                   ggAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGTGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCAt                                                                                                   >  1:1513063/1‑150 (MQ=255)
                                                   ggAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCAt                                                                                                   >  2:446557/1‑150 (MQ=255)
                                                   ggAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCAt                                                                                                   <  2:1659620/150‑1 (MQ=255)
                                                   ggAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCAt                                                                                                   >  1:92195/1‑150 (MQ=255)
                                                      aagaaaTAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGTGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttat                                                                                                <  2:1653013‑M1/150‑48 (MQ=255)
                                                       agaaaTAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatt                                                                                               <  2:913360‑M1/150‑49 (MQ=255)
                                                       agaaaTAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACTTATTTTTTATCAAGCATaaaa                                                                                               >  2:1294688/1‑150 (MQ=255)
                                                            taatCTCATAAACGAAAAATTAAAAAGAGAAGATGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATAtt                                                                                          <  1:518044/150‑1 (MQ=255)
                                                                  cATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaaaaaa                                                                                    >  1:1150877/1‑150 (MQ=255)
                                                                  cATAAACGAAAAATTAAAAAGAGAAGAGGTATGATTTAACTTATTGATAATAAAGATAAAAAAACAAATAAATACAAGACAATTGGTGACAAACTGTCAATATCATAAATAAGATACGTATTTTTACTCAAGCATAAAAATATTaaaaaa                                                                                    >  1:2008628/1‑150 (MQ=255)
                                                                     aaaCGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCAAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGa                                                                                 >  1:597276/1‑150 (MQ=255)
                                                                      cagtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGAc                                                                                >  1:868551‑M1/79‑150 (MQ=255)
                                                                        gtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACaa                                                                              <  1:372650‑M1/74‑1 (MQ=255)
                                                                         gAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACaaa                                                                             >  2:736509/1‑150 (MQ=255)
                                                                             aaTTAAAAAGAGAAGATGTGTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAAAAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgt                                                                         <  2:304550‑M1/150‑71 (MQ=255)
                                                                                      gagaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTg                                                                >  2:1458650/1‑150 (MQ=255)
                                                                                        taagaggTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttattt                                                              <  1:2087928‑M1/149‑82 (MQ=255)
                                                                                        taagaggTTTGATTTAACTTATTCATAATAAAGTTAAAAAAACAAATAAATACAAGCCAATTGGGGCCAttttgactcatagaggaaagcatcgcgtacaaactttttcagtttatttgttggcttaatattctattgttatctttattt                                                              <  1:1763973‑M1/149‑82 (MQ=255)
                                                                                        gaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGATACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACtttt                                                              >  1:1029393/1‑150 (MQ=255)
                                                                                          agagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTg                                                            >  2:717916/1‑150 (MQ=255)
                                                                                            agGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGat                                                          <  2:679735/150‑1 (MQ=255)
                                                                                               tttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACTTATTTTTTCTAAATAATAAAAATATTAAAAAACTACAAAAAGCATCTAACTGTTTGatatt                                                       >  1:1953846/1‑149 (MQ=255)
                                                                                                ttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAACAAGCATCTAACTGTTTGATATGt                                                      <  2:1200746/150‑1 (MQ=255)
                                                                                                 tGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGTGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttatttatagatgtt                                                     <  1:2005267‑M1/150‑91 (MQ=255)
                                                                                                  taTTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTTGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTaa                                                    <  1:1164249/149‑1 (MQ=255)
                                                                                                  gATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGACAAAATGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTaa                                                    <  1:1878648/150‑1 (MQ=255)
                                                                                                        aCTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAattatt                                              >  1:1388539/1‑150 (MQ=255)
                                                                                                         cTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTAttt                                             >  2:16980/1‑150 (MQ=255)
                                                                                                          ttATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttccgtttatttgttggcttaatattctattgttatctttatttatagatgtttatattgca                                            <  1:1806602‑M1/150‑100 (MQ=255)
                                                                                                           tATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCt                                           >  1:464024/1‑150 (MQ=255)
                                                                                                           tATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCt                                           >  1:800978/1‑150 (MQ=255)
                                                                                                              tGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTAtt                                        <  2:408794/150‑1 (MQ=255)
                                                                                                              tGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGAAATGTAAATTATTTCTAtt                                        >  1:83551/1‑150 (MQ=255)
                                                                                                               gATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTg                                       >  2:1884779/1‑150 (MQ=255)
                                                                                                                ataataAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAGACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGt                                      >  2:1890575/1‑150 (MQ=255)
                                                                                                                     aaaGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATATATAAGTTACGTATTTTTTCTCAAGCATTAAAATATTAAAAAACGACAAAAAGCATCTATCTGTTTGATATGTAAATTATTTCTATTGTAaatt                                 >  2:1371712/1‑150 (MQ=255)
                                                                                                                      aaGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAaatta                                <  2:1586169/150‑1 (MQ=255)
                                                                                                                       gcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAaattaa                               <  2:139772‑M1/121‑1 (MQ=255)
                                                                                                                       aGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAaattaa                               >  2:1618983/1‑150 (MQ=255)
                                                                                                                          tAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttatttatagatgtttatattgcatgaggtggtttttgga                            >  1:290304‑M1/1‑35 (MQ=255)
                                                                                                                          tAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttatttatagatgtttatattgcatgaggtggtttttgga                            <  1:1340228‑M1/150‑116 (MQ=255)
                                                                                                                            aaaaaaCAAATAAATACAAGACAATTGGGCCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttatttatagatgtttatattgcatgaggtggtatttggaga                          >  2:117983‑M1/1‑33 (MQ=255)
                                                                                                                              aaaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTcaca                        <  2:1486613/150‑1 (MQ=255)
                                                                                                                                aaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATc                      <  1:436393/150‑1 (MQ=255)
                                                                                                                                aaCAAATAAATAAAAGACAATTTTGGCCAAACTGTCAATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATc                      <  1:691966/150‑1 (MQ=255)
                                                                                                                                 aCAAATAAATACAAGACAATTGGGTCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCa                     <  1:996666/150‑1 (MQ=255)
                                                                                                                                   aaataaatACAAGTCAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTAAAGCATAAAAATATTAAAAAACGACAAAAATCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCAcc                   <  2:2079362/150‑1 (MQ=255)
                                                                                                                                    aataaataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTATTCTCAACCATAAAAATATTAAAAAACTACAAAAAGCATCTAACTGATTGATATATAAATTATTTCAATTGTAAATTAATTTCACATCAcca                  >  1:403844/1‑149 (MQ=255)
                                                                                                                                         tgatgaaacatTTGGGGACAAACTGTCCATATCATTAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAATAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCt             >  1:1046743‑M1/12‑150 (MQ=255)
                                                                                                                                            cAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTGTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCtata          >  1:1772037/1‑150 (MQ=255)
                                                                                                                                              aGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttatttatagatgtttatattgcatgaggtggtttttggagagaagaatgaggaagatgc        >  2:592456‑M1/1‑15 (MQ=255)
                                                                                                                                              aGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATg        >  2:801316/1‑150 (MQ=255)
                                                                                                                                                    TTGTGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTAAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGc  >  1:1903349‑M1/1‑150 (MQ=255)
                                                                                                                                                    TTGGGGCCAAACTGTCCATATAATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGc  >  1:1010082‑M1/1‑150 (MQ=255)
                                                                                                                                                    TTGGGGACAAACTGTCCATATCATAAATAAGTTAAGTATTTTTTCTCAAGCATAAAAATATTAAAAAAAGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGc  >  1:1256783‑M1/1‑150 (MQ=255)
                                                                                                                                                    |                                                                                                                                                     
CCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGC  >  NC_000913/4542534‑4542831

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.