| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 1,552,191 | C→A | 21.7% | intergenic (+200/+207) | fdnI → / ← yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,552,191 | 0 | C | A | 21.7% | 163.0 / 15.3 | 89 | intergenic (+200/+207) | fdnI/yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base C (20/47); new base A (19/3); total (39/50) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.79e-06 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATC‑CGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCAT > NC_000913/1552042‑1552340 | atatTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTc < 1:772128/150‑1 (MQ=31) atTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCaa < 2:742942/150‑1 (MQ=32) atTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCaa < 2:2075898/150‑1 (MQ=32) tataCAACGTAGGCTTTGTTCATTCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAATCCCTTCAAATCCAATAGATTGAAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATgg < 1:117598/147‑1 (MQ=255) aGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGgc < 2:763363/150‑1 (MQ=34) gACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGgcg < 2:1982757/150‑1 (MQ=34) aCAACGTAGGCTTTGTTCATGCCGGATGCGGCTTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGgcgc < 2:516470/150‑1 (MQ=21) aCAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGgcgc < 1:2046166/150‑1 (MQ=34) aaCGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTg < 1:1187574/150‑1 (MQ=35) aaCGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTg < 2:903927/150‑1 (MQ=35) aGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTaaaa < 1:1954752/150‑1 (MQ=39) aGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTAAAAATGGCGCTGTaaaa > 2:1958206/1‑150 (MQ=21) ggCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATTCTGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAg < 2:715844/150‑1 (MQ=255) gCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTAAAATGGCGCTGTATAAgg > 1:1208267/1‑150 (MQ=18) gCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCATTTGTCATCAGTTTCAAATGGCGCTGTAAAAgg < 2:2080900/150‑1 (MQ=255) tttGTTCATGCCGGATGCTGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGAATCAGGCAATGTTTAGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCg < 2:277818/150‑1 (MQ=255) ttCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCAt < 2:1906734/150‑1 (MQ=255) cATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCAttt > 1:1657332/1‑150 (MQ=255) cATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCAttt < 1:731630/150‑1 (MQ=255) tGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTAAAATGGCGCTGTAAAAAGGGTCAtttta > 2:1908082/1‑149 (MQ=255) tGCCGGATGCGGCGTGAACGCCTTATACGGCATGAAAACCCTTCAAATCCAATAGTTTGCAGTGAACGTGTAGTCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTc < 2:778579/150‑1 (MQ=255) tGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTAAAAATGGCGCTGTAAAAAGAGACAtttta > 2:1122557/1‑149 (MQ=11) ggATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATAAGGCAATGATGCGTTTTTCATAAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCatat > 2:1612272/1‑150 (MQ=255) ttcggcgTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGt < 1:195830/148‑1 (MQ=255) gcggcgTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTa < 2:1189440/150‑1 (MQ=255) cggcgTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAg > 1:1775720/1‑150 (MQ=255) cggcgTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTAAAATGGCGCTGTAAAAGGCGGCATTTTAATATTGAAg > 1:10604/1‑150 (MQ=255) tGAACGCCTTATCCGGAATGAAAACACTTCAAATCCAATAGATTGCTGTGAACGTGTAGTCCTGATAAGCGTAGCGCATCAGGCAATGTTTCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAAc < 1:454534/150‑1 (MQ=18) taaCGGCTTATCCGCAATGAAAACCCTTCAAATCCAATATATTGCAGTGACCGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCCGTTGAGATCAGTATCAAATGGCGCTGTAAAAGGCGGCATTTTCATATTGTAGACAACg < 1:73627/149‑1 (MQ=17) cGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAg < 1:1312052/150‑1 (MQ=255) gCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAgg < 1:443474/150‑1 (MQ=255) tcTTATCCTGCATGATAACCCTTAAATTCCAATAGATTGCAGTGATCGTGTAGGCCTGATAAGCGTAGCGAATGAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGc < 2:1760370/149‑1 (MQ=18) ccTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTAAAATGGCGCTGTAAAAGGAGTCATTTTAATATTGTAGACAAAGTAgga > 2:1804929/1‑149 (MQ=255) aTCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTg < 2:1166264/150‑1 (MQ=255) gCATGAAAACGCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATGAGGAAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCAt < 2:101026/150‑1 (MQ=255) aaaaCCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTAAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTTTTAATGcatt > 2:655883/1‑147 (MQ=255) aCCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCACGCCGCAtc < 2:1775720/150‑2 (MQ=255) cccTTCTAATTCTATAGATTGCATTGAAAGTGTCGGACTGATAAGCGTAGCGCATGAGGCAATGTTGCTTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATgc < 2:1025735/150‑1 (MQ=25) aaaTCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTAAAATGGCGCTGTAAAAAGAGTCATTTTGATATTGTAGAAAAAGACGGCTTAGTACATGCACGATgcggcttt > 2:1080761/1‑147 (MQ=17) aaTCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTAAAATGGCGCTGTAAAAGGCGTCATTTTAATATTTTAGACAACGTAGGCTTTATTCATGCCGGATGCAGCGTGa > 2:1950453/1‑150 (MQ=21) ccAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTAAAATGGCGCTGTATAAGGCGTCATTTTAATATTGTAGACAACGTAGGCTTTGTTCATTCCGGATGCGGCGTGAAcc > 2:731329/1‑149 (MQ=255) aTAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCt < 1:1720101/150‑1 (MQ=255) tAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCtt < 2:526853/150‑1 (MQ=255) aTTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTATAAGGCGTCATTTTCATATTGTTGACCACGTAGGCTTTGTTCATGCCGGATCCGGCGTGAACGCCTTATc > 1:862282/1‑150 (MQ=255) aTTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTAAAATGGCGCTGTAAAAAGAGTCATTTTAATATTGTAGACAAAGTAGGCTTTGTTCATGCCCGAAGCGTCGTGATCGCCGTaac > 2:98319/1‑148 (MQ=18) tgaaGTGAAAGTGTAGGTATTATAAGAGTATCTCATCAGGCAATTTTTCTTTTTTCATCAGTTTCAAATGGCGCTGTTAAAGGCGTCATTTTGATATTGTAGACAACGTAGGCTTTGTTCTTGCCGGATGCGGCGTGAACGCCTTATC‑Cg < 2:1349039/147‑1 (MQ=17) cAGTGAACGTGTAGTCCTGATAATCGGATCTCATCAGGCAATGTTGCTTTTGTAATCAGTTTAAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATC‑CGGc < 2:254920/150‑1 (MQ=18) cAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGACTTATC‑CGGc > 1:1698997/1‑150 (MQ=255) ttGAACGTGTAGGACTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATC‑CGGCAt < 1:783860/149‑1 (MQ=255) gcgAACGTGTAGGCCTGATAACCGTAGCGCATCAGGCAATGTTTCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATC‑CGGCAt < 2:16304/148‑1 (MQ=255) gTGAACGTGTAGGCATGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTTTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTACGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATC‑CGGCAt < 1:1295421/150‑1 (MQ=255) ctGAACGAGAAGGCATTATAAGCGTAGCGCATCAGGCAATGTTTCGGTAGTCATCAGTTTAAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATC‑CGGCAt < 2:1310647/149‑1 (MQ=18) aCGTCTAGGCATGATATTCGTATCGAATCAGTTAATGTTGATTTTTTAATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATC‑CGGCATGaaa < 2:227638/150‑1 (MQ=17) gtgtCGGCCTGATAAGAGTATCTAATCATTCAATGTTTAGTGAGTCATCATATTCAACTGTCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGTTGCGGCGTGAACGCCTTATC‑CGGCATGAAAAc < 1:1259295/150‑1 (MQ=14) gtAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATC‑CGGCATGAAAAccc < 2:692421/150‑1 (MQ=255) gtAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTAAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATC‑CGGCATGAAAAccc > 2:1707664/1‑150 (MQ=255) tAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATC‑CGGCATGAAAACCCt < 2:1683115/150‑1 (MQ=255) tAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGAGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATC‑CGGCATGAAAAccat > 2:1903878/1‑148 (MQ=255) ggcattaTAAGCGTAGCGCTTCAGGCAATGTTGCGTTTGTCATCAGGTGCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATC‑CGGCATGAAAACCCTTc < 2:395553/144‑1 (MQ=18) ggCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTAAAATGGCGCTGTAAAAGGAGTCATTTTAATATTGTAGACAACGTAGGCTTTTTACATTCAGGATGCGTCTTTAACGTCTAAAA‑CGGCATGAAAAGCCtta > 2:411496/1‑149 (MQ=21) gATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTAAAATGGCGCTGTAAAAGGAGGCATTTTAATATTGAATACAACGTAGGCTTTGTTCATGCCGGAAGCGTCGTTAAAGGCGGAAC‑CCGCATGAAAACCCTTCAAATc > 2:781464/1‑150 (MQ=18) aaGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATC‑CGGCATGAAAACCCTTCAAATCCaa < 2:1131950/150‑1 (MQ=255) aGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGATCGCCTTATC‑CGGCATGAAAACCCTTCAAATACAAt > 1:2018184/1‑150 (MQ=255) aGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATA‑CGGCATGAAAACCCTTCAACTCCAAt > 2:449970/1‑150 (MQ=255) aGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTAAAATGGCGCTTTAAAAGGAGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCCGAAGCGGCGTGAACGCCTTATC‑CGGCATGAAAACCCTTCAAAACCAAt > 2:2087646/1‑150 (MQ=18) gCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTAAAATGGCGCTGTAAAAGGCGTCATTTTGATATTGTAGACACCGAAGGCTTAGTTCATACCGGATCCGGCGTGAAAGAC‑AATCACGGCCTCACAACCCTTCAAATCCAATa > 2:275422/1‑150 (MQ=18) gCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTAAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTATACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGACTTATC‑CGGCATGAAAACCCTTCAAATCCAAtg > 2:1174465/1‑149 (MQ=255) ccGTATCGAATCAGTAAATGTTGATTTAGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATC‑CGGCATGAAAACCCTTCAAATCCAATa < 2:1896033/149‑1 (MQ=14) gTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATA‑CGGCATGAACACCCTTCAAATCCAATAGa > 1:732173/1‑150 (MQ=255) tAGCGCATCAGGAAATGTTTCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATC‑CGGCATGAAAACCCTACAAATCCAATAGAt < 2:933583/150‑1 (MQ=255) tcgcATCAGTAAATGTTGCTTTTGTCATAAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATC‑CGGCATGAAAACCCTTCAAATCCAATAGATTg < 1:1877360/149‑1 (MQ=255) ggcATCAGTCAATGTTTCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATC‑CGGCATGAAAACCCTTCAAATCCAATAGATTGc < 2:1144906/149‑1 (MQ=255) ggCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGGGTCATTTTATTATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCCGCTTTAACGACTTATA‑CGGAAAGAAAACCCTTAAAATCAAATAGATAGCatttaaa > 1:196817/1‑144 (MQ=17) ggCAATGTTGCGTTTGTCATCAGTTAAAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGAAGGCTTTGTTCATTCCGGATGCGGCGTGAACGCCGGATC‑CGCCATCAACACCCTTCAAAAACAATAGATTCCAGTTAAc > 2:1296843/1‑150 (MQ=17) aTGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTATGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATC‑CGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACgtgt < 2:1657332/150‑1 (MQ=255) tGTTTCTTTTGGCTTCAGGTTCAAATGGCGTTTAAATAGGGGTCTTTTTTATATTGTTGACAAGTTAGGATTTGTTCATGCCGTAGGCGGCGTTAACGCCTTATC‑CGGCATGAATACCCTTCAAATCCAATAGATTGGAGTGAACGTTTa < 2:659144/150‑1 (MQ=2) ttGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTAATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGACGTATA‑CGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTTAACGTGTatg > 1:150366/1‑148 (MQ=17) gCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATC‑CGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGcc > 2:680764/1‑150 (MQ=255) gCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATC‑CGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAAAGTGTAGGcc > 2:651437/1‑150 (MQ=255) gCGTTTGTCATCAGTTTAAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTTAACGACTTATC‑ACGCATGAAAACCCTTCAAATCCAAAAGATTTCATTGAACGTGTAGGcc > 1:243591/1‑150 (MQ=14) cGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATC‑CGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCt > 2:747310/1‑150 (MQ=255) gTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATC‑CGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATaa > 1:898668/1‑150 (MQ=255) gTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATC‑CGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATaa > 2:1685670/1‑150 (MQ=255) catcaGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCTGCGTGAACGCCTTATC‑CGGCATGAAAACCCTTCAACTCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGc > 1:1263743/1‑150 (MQ=255) atcaGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATC‑CGGCATGAAACCCCTTCAAATCCAATACATTGCAGTGAACGTGTAGGCCTGATAAGCg > 1:155583/1‑150 (MQ=255) atcaGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATC‑CGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCg > 2:1333524/1‑150 (MQ=39) gTTTAAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATC‑CGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAgc < 2:788237/150‑1 (MQ=17) tttCAAATGGCGCTGTAAAATGCGTTATTTTCATATTGTTGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATC‑CGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAgcg < 1:1612272/150‑1 (MQ=255) tttCAAATGGCGCTGTAAAAGGCGTCATTTTCATTTTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATC‑CGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAgcg < 1:1295805/150‑1 (MQ=25) ttCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATC‑CGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAgcgg > 1:317938/1‑149 (MQ=21) cAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATC‑CGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCAt > 2:189624/1‑150 (MQ=32) | ATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATC‑CGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCAT > NC_000913/1552042‑1552340 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |