New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4053426 =	184 (1.420)	4 (0.050) +CAATGTGCTGAGAACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATT	4/180	7.9	3.5%	intergenic (+8/+221)	hemN/yshB	coproporphyrinogen III oxidase, SAM and NAD(P)H dependent, oxygen‑independent/uncharacterized protein
	?	NC_000913	= 4103596	NA (NA)					intergenic (+100/+6)	yiiM/cpxA	6‑N‑hydroxylaminopurine resistance protein/sensory histidine kinase in two‑component regulatory system with CpxR
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCACATTGATGGCGCTTTCGTTTTCTACTTTGTAAACGAAGCGCCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4053472‑4053426 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCATTTGCAGGCAGGATAAGGCGTTTACGCCGCATCCGGCATTTGAGCAGGATGC  <  NC_000913/4103596‑4103542                                                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                                                        GCACATTGATGGCGCTTTCGTTTTCTACTTTGTAAACGAAGCGCCATCAATGTGCTGAGAACAAGATTGCCTGATGCGCTGGGAAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGGCATct             >  2:265125/1‑148         ATGGCGCTTTCGTTTTCTACTTTGTAAACGAAGCGCCATCAATGTGCTGAGATCAAGATTGCCTGATGCGCTGGGCAACAAAAACTGTTGAAATTATTGCTATTGTAGGACGGATAAGGCGTTTTCGCCGCATCAGGCATCTGAGCAtta     >  1:258303/1‑147           GGCGCTTTCGTTTTCTACTTTGTAAACGAAGCGCCATCAATGTGCTGAGAACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGGCATCTGAGCATGATG   >  1:75097/1‑150            GCGCTTTCGTTTTCTACTTTGTAAACGAAGCGCCATCAATGTGCTGAGAACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGGCATCTGAGCATGATGC  >  1:725853/1‑150                                                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                                                        GCACATTGATGGCGCTTTCGTTTTCTACTTTGTAAACGAAGCGCCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4053472‑4053426 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCATTTGCAGGCAGGATAAGGCGTTTACGCCGCATCCGGCATTTGAGCAGGATGC  <  NC_000913/4103596‑4103542

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.