Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 257,908 Δ776 bp [crl] [crl]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 257908–258676 258683 8–776 130 [0] [0] 130 [crl] [crl]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2579070 (0.000)127 (1.040) 91/282 0.2 100% intergenic (+8/‑769) crl/crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers
?NC_000913 258684 = 0 (0.000)pseudogene (9/331 nt) crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers

Only 100 of 130 total aligned reads displayed.

CTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTC  >  NC_000913/257762‑258051
                                                                                                                                                 |                                                                                                                                                
cTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCAATAGGCCCGTATATTCGTGAAGGTAagtg                                                                                                                                              >  1:1586023‑M1/1‑146 (MQ=255)
 ttGTGTTAAAAATTTCCTAAATTATGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGAAAGAAATGACTTTACAGTGTGGACACCCGAAGAGCAGAATGATCAATAAATTTACCGAAGTAGGCCCGTATATTGGTGATGGTAagtgc                                                                                                                                             <  2:1029165‑M1/150‑6 (MQ=255)
  tgtgTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgca                                                                                                                                            >  2:1013977‑M1/1‑144 (MQ=255)
  tgtgTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgca                                                                                                                                            <  1:710059‑M1/150‑7 (MQ=255)
  tgtgTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgca                                                                                                                                            <  1:1930095‑M1/150‑7 (MQ=255)
  tgtgTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgca                                                                                                                                            <  1:162703‑M1/150‑7 (MQ=255)
   gtgtTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaa                                                                                                                                           <  2:621945‑M1/150‑8 (MQ=255)
       tAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagat                                                                                                                                       <  1:818621‑M1/150‑12 (MQ=255)
       tAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagat                                                                                                                                       >  1:1411156‑M1/1‑139 (MQ=255)
       tAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACACGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagat                                                                                                                                       <  1:825603‑M1/150‑12 (MQ=255)
           aaTTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatc                                                                                                                                   <  1:354593‑M1/150‑16 (MQ=255)
           aaTTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatc                                                                                                                                   <  1:1998603‑M1/150‑16 (MQ=255)
                gCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattc                                                                                                                              >  1:1400161‑M1/1‑130 (MQ=255)
                 cTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattct                                                                                                                             >  1:1142882‑M1/1‑129 (MQ=255)
                   aaaTTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattcttt                                                                                                                           <  2:1104029‑M1/150‑24 (MQ=255)
                     aTTTTGCCAATTTGGTAAAACAGTTGCATCACAACATGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattcttttt                                                                                                                         <  2:1817377‑M1/150‑26 (MQ=255)
                      ttttGGCTATTTGGTAAAACAGTTGAATCATAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAATATCTGATTGATCAAAAAATTTACCGCACTAGTCCAGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttc                                                                                                                        <  2:588178‑M1/150‑27 (MQ=255)
                      ttttGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATTTTCGTGAAGGTAagtgcaaagataatcgattctttttc                                                                                                                        >  2:245798‑M1/1‑124 (MQ=255)
                      ttttGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttc                                                                                                                        <  2:1920932‑M1/150‑27 (MQ=255)
                      ttttGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttc                                                                                                                        <  2:588169‑M1/150‑27 (MQ=255)
                      ttttGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttc                                                                                                                        <  2:1812520‑M1/150‑27 (MQ=255)
                       tttGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcg                                                                                                                       <  2:1511724‑M1/150‑28 (MQ=255)
                         tGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgat                                                                                                                     <  2:280689‑M1/150‑30 (MQ=255)
                         tGCCAATTTGGTAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgatt                                                                                                                    >  1:1506164‑M1/1‑120 (MQ=255)
                          gCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgatt                                                                                                                    <  1:1736020‑M1/150‑31 (MQ=255)
                             aaTTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtc                                                                                                                 <  2:1617604‑M1/150‑34 (MQ=255)
                                 tGGTAAAACAGTTGCATCACAAGAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataagcgattctttttcgattgtctggc                                                                                                             <  1:1432638‑M1/150‑38 (MQ=255)
                                 tGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggc                                                                                                             >  1:1497456‑M1/1‑113 (MQ=255)
                                   gTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctg                                                                                                           >  2:256061‑M1/1‑111 (MQ=255)
                                    tAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgt                                                                                                          >  2:612853‑M1/1‑110 (MQ=255)
                                    tAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgt                                                                                                          >  2:1557282‑M1/1‑110 (MQ=255)
                                      aaaCAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtat                                                                                                        >  1:584150‑M1/1‑108 (MQ=255)
                                       aaCAGTTGCATCACAACAGGAGATATCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTTGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatg                                                                                                       <  1:358999‑M1/150‑44 (MQ=255)
                                       aaCAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattcgttttcgattgtctggctgtatg                                                                                                       >  2:1740569‑M1/1‑107 (MQ=255)
                                        aCAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgc                                                                                                      >  2:1105530‑M1/1‑106 (MQ=255)
                                         cAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGACGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcg                                                                                                     <  1:397563‑M1/150‑46 (MQ=255)
                                         cAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcg                                                                                                     <  1:476171‑M1/150‑46 (MQ=255)
                                             tGCATCACAACAGGATATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGCCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaa                                                                                                 <  1:545540‑M1/150‑50 (MQ=255)
                                              gCATCACAACAGGAGATAGAAATGCCGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttctattgtctggctatatgattcaaa                                                                                                >  2:691109‑M1/1‑100 (MQ=255)
                                               cATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctgtctgtatgcgtcaacg                                                                                               >  2:507807‑M1/1‑99 (MQ=255)
                                               cATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacg                                                                                               <  1:1384088‑M1/150‑52 (MQ=255)
                                               cATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacg                                                                                               <  2:881393‑M1/150‑52 (MQ=255)
                                                 tCACAACAGGAGTTAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTCCCGCACTAGGCACGTATATTGGTGAAGGTAagtgcatagataatcgattctttttagattgtctggctgtatgggtcaacgtg                                                                                             >  2:1232578‑M1/1‑97 (MQ=255)
                                                 tCACAACAGGAGATAGCAATGACGTTACCGAGTGAACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtg                                                                                             >  2:823767‑M1/1‑97 (MQ=255)
                                                    caacaGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaa                                                                                          >  1:1824111‑M1/1‑94 (MQ=255)
                                                      acaGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgagtgtctggctgtatgcgtcaacgtgaaacc                                                                                        >  1:1069736‑M1/1‑92 (MQ=255)
                                                              tAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccgg                                                                                <  2:770206‑M1/150‑67 (MQ=255)
                                                              aagCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccgg                                                                                <  2:979515‑M1/149‑67 (MQ=255)
                                                                 cAAAGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATATACCGCACTAGGCCCGTATATTAGTGAAGGTAagtgcaaagaaaatcgatacttattcgattgtctggctgtatgcgtcaacgtgaaaccggctccggaag                                                                             >  1:1700791‑M1/1‑81 (MQ=255)
                                                                  aaTGACGTTACCGAGTGGACACCAGAAGAGCAGATTGATCTAAATATTTACCGCTCTAGGCCCGTATATTCGTGAAGGTAagtgcaaagattatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagt                                                                            <  1:9823‑M1/150‑71 (MQ=255)
                                                                   aTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtg                                                                           <  1:1696084‑M1/150‑72 (MQ=255)
                                                                     gACGTTACCGTGTGGACACCCGATGAGAAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCTTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaatccggcaccggaagtgcg                                                                         <  2:381316‑M1/150‑74 (MQ=255)
                                                                        gTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAtgtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccgaaagtgcgtga                                                                      >  1:934274‑M1/1‑74 (MQ=255)
                                                                            ccGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattg                                                                  >  1:831462‑M1/1‑70 (MQ=255)
                                                                               aGTGGACACCCTAAGAGCAGATTGAGCAAAAAATTTACCGCACTAGGCCCGTATATTCGTTAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaccgtgaaaccggcaccggaagtgcgtgaattctgg                                                               <  2:818233‑M1/150‑84 (MQ=255)
                                                                               aGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctgg                                                               <  1:2023205‑M1/150‑84 (MQ=255)
                                                                                  ggACACCCGAAGAGCAGATTTATCAAAAAATTTACAGCACTAGGCCCTTATATTCGTGAAGGTAagtgcaaagataatcgattctatttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggc                                                            <  1:991811‑M1/150‑87 (MQ=255)
                                                                                      acCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggt                                                        <  2:1754327‑M1/150‑91 (MQ=255)
                                                                                       cccGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttctattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagggcgtgaattctggggctggtg                                                       <  1:1471305‑M1/150‑92 (MQ=255)
                                                                                       cccGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtg                                                       >  1:863515‑M1/1‑59 (MQ=255)
                                                                                       cccGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgatactttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagagcgtgaattctggggctggtg                                                       >  1:1029825‑M1/1‑59 (MQ=255)
                                                                                       cccGAAGAGCAGAGTGATCAAAAAATTTCCCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgggaaaccggcaccggaagtgcgtgaattctggggctggtg                                                       <  1:1031807‑M1/150‑92 (MQ=255)
                                                                                          gAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggat                                                    >  1:713009‑M1/1‑56 (MQ=255)
                                                                                          gAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataagcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggat                                                    <  1:1102103‑M1/150‑95 (MQ=255)
                                                                                            agagCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatgg                                                  >  1:812471‑M1/1‑54 (MQ=255)
                                                                                             gagCAGATTGATCAAAAAATTTACCGCACTAGTCACGTATATTCGTGAAGGTAagggcaaagataatcgattcattttcgcttgtctggctgtatgcgtcaacgtgaaaccggcacgggaagtgcgttaattctggggctggtggatgga                                                 <  1:843804‑M1/150‑98 (MQ=255)
                                                                                             gagCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatgga                                                 <  2:1410395‑M1/150‑98 (MQ=255)
                                                                                               gCAGATTGATCAAAAAATTTACCGCCCTATGCACGTAAATTCGTGAAGGTAagttaaaagataagcgcttctttttcgattgtctgggtgtatgagtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctgttggatggagc                                               <  2:1413150‑M1/150‑100 (MQ=255)
                                                                                                cAGATTTATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagct                                              <  2:968081‑M1/150‑101 (MQ=255)
                                                                                                 agagTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagatactcgattctttttcgattgtctggctgtatgcggcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctg                                             <  2:1468557‑M1/150‑102 (MQ=255)
                                                                                                  gATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctgg                                            <  2:1497456‑M1/150‑103 (MQ=255)
                                                                                                     tGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaag                                         <  1:935034‑M1/150‑106 (MQ=255)
                                                                                                     tGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaag                                         >  1:418010‑M1/1‑45 (MQ=255)
                                                                                                      gATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagc                                        >  2:1828365‑M1/1‑44 (MQ=255)
                                                                                                         cAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgca                                     >  2:70510‑M1/1‑41 (MQ=255)
                                                                                                         cAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgca                                     <  1:887045‑M1/150‑110 (MQ=255)
                                                                                                         cAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgca                                     >  1:1852196‑M1/1‑41 (MQ=255)
                                                                                                         cAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgca                                     >  2:1223917‑M1/1‑41 (MQ=255)
                                                                                                          aaaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGAAagtgcaaagataatcgattctttttcgattgtctggctttatgcgtcaacgtgacaccggcaccggaagtgcgtgaattcgggggctggtggatggagctggaagcgcag                                    >  2:159365‑M1/1‑40 (MQ=255)
                                                                                                           ataaattTACCGCACTAGGCCGGTATATTCGTGAAGGTAagtgcaaagataatcgattcgttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcagg                                   <  2:1071782‑M1/148‑112 (MQ=255)
                                                                                                            aaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcagga                                  <  2:1138106‑M1/150‑113 (MQ=255)
                                                                                                                tttACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcc                              <  1:1557282‑M1/150‑117 (MQ=255)
                                                                                                                          tAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacct                    <  2:948636‑M1/150‑127 (MQ=255)
                                                                                                                           nggcCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttaccta                   >  2:592013‑M1/2‑23 (MQ=255)
                                                                                                                           aGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttaccta                   >  1:271855‑M1/1‑23 (MQ=255)
                                                                                                                            ggCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctac                  <  1:578526‑M1/150‑129 (MQ=255)
                                                                                                                            ggCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgagaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgaaggaatcccgttttacctac                  >  1:1389974‑M1/1‑22 (MQ=255)
                                                                                                                             gCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctaca                 <  2:584150‑M1/150‑130 (MQ=255)
                                                                                                                              cccGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacag                >  2:1329621‑M1/1‑20 (MQ=255)
                                                                                                                              cccGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacatacag                >  1:1925000‑M1/1‑20 (MQ=255)
                                                                                                                              cccGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggatgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacag                <  2:1482240‑M1/150‑131 (MQ=255)
                                                                                                                               ccGTCTATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctggatgcgtcaacgtgaaaacggcccgggaagtgcgtgagttggggggctggtggagggagctggacgcgcaggaatccggtttttcctacagt               >  2:340988‑M1/1‑19 (MQ=255)
                                                                                                                                cGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagtt              >  1:717257‑M1/1‑18 (MQ=255)
                                                                                                                                    tatTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttacca          >  1:321574‑M1/1‑14 (MQ=255)
                                                                                                                                     atTCGTGAATGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccag         <  1:917420‑M1/150‑138 (MQ=255)
                                                                                                                                        cGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagttt      <  2:1563858‑M1/150‑141 (MQ=255)
                                                                                                                                        cGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagttt      <  1:213316‑M1/150‑141 (MQ=255)
                                                                                                                                         gtgcatttaagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaatccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttg     <  2:807630‑M1/143‑142 (MQ=255)
                                                                                                                                         gTGAAGGTAagtgcaaagataatcgatgctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattccggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttg     <  1:1474200‑M1/150‑142 (MQ=255)
                                                                                                                                            aaGGGAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggtc  <  2:1411156‑M1/150‑145 (MQ=255)
                                                                                                                                                 |                                                                                                                                                
CTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTC  >  NC_000913/257762‑258051

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: