BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	1,978,503	Δ776 bp		insB1–insA	insB1, insA

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	1978503–1979270	1979278	9–776	102 [0]	[0] 99	insB1–insA	insB1,insA

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1978502	0 (0.000)	96 (0.780)	72/282	0.6	100%	intergenic (‑305/+16)	flhD/insB1	flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
*	?	NC_000913	1979279 =	0 (0.000)	96 (0.780)	72/282	0.6	100%	intergenic (‑64/‑474)	insA/uspC	IS1 repressor TnpA/universal stress protein

Only 100 of 102 total aligned reads displayed.

ATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAAT  >  NC_000913/1978353‑1978649

aTAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATG                                                                                                                                                     >  1:872095‑M1/1‑150 (MQ=255)

aTAGAAATGGGTCTTTACAATTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGTGGGGCTGAGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATG                                                                                                                                                     <  1:1277443‑M1/150‑1 (MQ=255)

aTAGAAATGGGTCTATACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATG                                                                                                                                                     <  2:2029151‑M1/150‑1 (MQ=255)

   gAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACTGAGGGGGGCTGCGATTTTCAATAATGCGTGATGGAGCTCACACAAAACACTCAATAACTTAACATAAATGtat                                                                                                                                                  >  2:158540‑M1/1‑147 (MQ=255)

   gAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtat                                                                                                                                                  >  1:889465‑M1/1‑147 (MQ=255)

       tGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagt                                                                                                                                              <  2:1094242‑M1/150‑8 (MQ=255)

       tGGGGCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACCCAAAACCCTCAATTACTTAACATAAATGtataagt                                                                                                                                              >  2:1174242‑M1/1‑143 (MQ=255)

         ggTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACCTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtca                                                                                                                                            >  2:309602‑M1/1‑141 (MQ=255)

            ttttaCACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCTATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCATTTACTTAACATAAATGtataagtcatac                                                                                                                                         <  1:1738026‑M1/149‑13 (MQ=255)

            cTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatac                                                                                                                                         <  1:194882‑M1/150‑13 (MQ=255)

             tttACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatact                                                                                                                                        <  1:1558119‑M1/150‑14 (MQ=255)

             tttACACTTATCTAAGATTTTCCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatact                                                                                                                                        <  1:1716021‑M1/150‑14 (MQ=255)

               tACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttt                                                                                                                                      <  1:1455224‑M1/150‑16 (MQ=255)

               tACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttt                                                                                                                                      <  1:1657184‑M1/150‑16 (MQ=255)

                  acTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgt                                                                                                                                   <  2:445629‑M1/150‑19 (MQ=255)

                   cTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgtt                                                                                                                                  >  1:866082‑M1/1‑131 (MQ=255)

                   cTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACAAACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAATCACTCAATTACTTAACATAAATGtataagtcatacgtttgtt                                                                                                                                  >  2:1804119‑M1/1‑131 (MQ=255)

                   cTTAACTAAGATTTTTCCTAAATCGACGCAACTCTACTCGTCACGACACGCACATACAACGGAGGGGGGCTGCGATTTACAATAATGCGTGCTGCAGCTCAAACAAAACCCTCAATTACTTAACATAAATGtataagtcatacttttgtt                                                                                                                                  >  2:1796316‑M1/1‑131 (MQ=255)

                        cTAAGTTTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGTAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttggg                                                                                                                             <  1:1543753‑M1/150‑25 (MQ=255)

                        cTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttggg                                                                                                                             <  2:1405742‑M1/150‑25 (MQ=255)

                        cTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttggg                                                                                                                             <  1:654373‑M1/150‑25 (MQ=255)

                        cTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttggg                                                                                                                             <  2:1937621‑M1/150‑25 (MQ=255)

                        cTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttggg                                                                                                                             >  1:640147‑M1/1‑126 (MQ=255)

                        ataAGATTTTTCCTAAATCGACGCAACTGTACTCGTAACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttggg                                                                                                                             <  1:1597177‑M1/149‑25 (MQ=255)

                         tAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggt                                                                                                                            >  2:760428‑M1/1‑125 (MQ=255)

                            tatTTTTCCTAAATCGACGCAACTGTAATAGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgta                                                                                                                         <  1:561287‑M1/149‑29 (MQ=255)

                            gATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCACTTACTTAACATAAATGtataagtcatacttatgttttgggtcta                                                                                                                         >  1:109335‑M1/1‑122 (MQ=255)

                            gATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgta                                                                                                                         >  1:1224902‑M1/1‑122 (MQ=255)

                            gATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATCCGTGAGGCAGATCTCACAAAACACTCAATTACTTACAATAAATGtataagtgatacttttgttatgggtgta                                                                                                                         >  1:91232‑M1/1‑122 (MQ=255)

                                tttCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTTCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttc                                                                                                                     <  2:1453478‑M1/150‑33 (MQ=255)

                                tttCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttc                                                                                                                     <  2:804374‑M1/150‑33 (MQ=255)

                                   ccTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaat                                                                                                                  >  2:487356‑M1/1‑115 (MQ=255)

                                   ccTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGCGGGCTGCGATTTTCAATATTGCGTGCTGCTGATCACACTAAACACTCAATTTCGTAACATATATGtatatgtcctccttttgttttgggtgtatttcatt                                                                                                                  >  2:393743‑M1/1‑115 (MQ=255)

                                     tAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatagttttgttttgggtgtatttcaatct                                                                                                                >  1:1136043‑M1/1‑113 (MQ=255)

                                     tAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatct                                                                                                                <  2:707984‑M1/150‑38 (MQ=255)

                                        aTCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgtt                                                                                                             >  2:169607‑M1/1‑110 (MQ=255)

                                          cGACGCAACTGTACTCGTCACTACACGCACATACAACTGAGGGGGGCTGCGATTTTCTATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaa                                                                                                           <  1:364134‑M1/150‑43 (MQ=255)

                                           gACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacctttgttttgggtgtatttcaatctgttaaa                                                                                                          >  2:405723‑M1/1‑107 (MQ=255)

                                            aCGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATTAATGtataagtcatacttttgttttgggtgtttttcaatctgttaaaa                                                                                                         >  1:207175‑M1/1‑106 (MQ=255)

                                             cGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaa                                                                                                        >  2:1364924‑M1/1‑105 (MQ=255)

                                              tcaACTGTACTCGTCATTACACGCACAAACAACGGATGTGTGCTGAGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaag                                                                                                       <  1:196594‑M1/149‑47 (MQ=255)

                                               cAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACCCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagt                                                                                                      <  2:102435‑M1/150‑48 (MQ=255)

                                                  cTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttt                                                                                                   <  2:1635647‑M1/150‑51 (MQ=255)

                                                  cTGTACTCGTCACTACACGCACATACAAAGGAGTTGGTCTGCTATTTTAAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttt                                                                                                   <  1:296246‑M1/150‑51 (MQ=255)

                                                    gTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttc                                                                                                 <  2:872095‑M1/150‑53 (MQ=255)

                                                     tACTCGTCACTACACGCACATACAACTGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcg                                                                                                <  1:806019‑M1/150‑54 (MQ=255)

                                                      aCTCGTCACTACACGAACATAAAACGGATGGGGGCTGAGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgc                                                                                               <  1:431038‑M1/150‑55 (MQ=255)

                                                         cGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctac                                                                                            >  1:1145652‑M1/1‑93 (MQ=255)

                                                             aCTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgcta                                                                                        >  2:984838‑M1/1‑89 (MQ=255)

                                                              cTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAAAGCGTGAAGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtaatacattttttttggttgtatttcaatcttttaaaaagttattcgctactctat                                                                                       >  1:1315988‑M1/1‑88 (MQ=255)

                                                                acacGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttctctacgctagca                                                                                     >  2:1836550‑M1/1‑86 (MQ=255)

                                                                acacGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagca                                                                                     >  2:1203335‑M1/1‑86 (MQ=255)

                                                                  acGCACATACTACGGAGGGGGGCTGAGATTTTCTATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttggtttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaag                                                                                   <  1:1789698‑M1/150‑67 (MQ=255)

                                                                   cGCACATACAACGGAGGTGGGCTGCGATATTCAAAAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagc                                                                                  <  2:386052‑M1/150‑68 (MQ=255)

                                                                   cGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagc                                                                                  >  1:1846245‑M1/1‑83 (MQ=255)

                                                                   cGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagc                                                                                  <  2:1659539‑M1/150‑68 (MQ=255)

                                                                    gCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagca                                                                                 >  1:1281561‑M1/1‑82 (MQ=255)

                                                                    gCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagca                                                                                 <  1:1991740‑M1/150‑69 (MQ=255)

                                                                        aTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaa                                                                             >  1:163768‑M1/1‑78 (MQ=255)

                                                                           cAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGCTGCAAATCACACAAAACACTCAATTACTTAACATAAATGtataagtcataattttgatttgggtgaatttcaatctgttaaaaagtttttcgctaagctagcaagcaaaaatga                                                                          >  2:1028326‑M1/1‑75 (MQ=255)

                                                                           cAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatga                                                                          >  1:1244179‑M1/1‑75 (MQ=255)

                                                                           cAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttatgggtgtatttcaatctgttaaaaagtatttcgctacgctagcaagcaaaaatga                                                                          >  1:723442‑M1/1‑75 (MQ=255)

                                                                             aCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaa                                                                        <  2:201826‑M1/150‑78 (MQ=255)

                                                                              cGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaac                                                                       >  2:650691‑M1/1‑72 (MQ=255)

                                                                              cGGAGGGGGGCTGCGATTTTCAATAATGCGAGATGCAGATCACACAAACCACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaac                                                                       >  1:89471‑M1/1‑72 (MQ=255)

                                                                                  ggggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacagga                                                                   <  2:786630‑M1/150‑83 (MQ=255)

                                                                                        cTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatc                                                             >  1:123592‑M1/1‑62 (MQ=255)

                                                                                         tGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcg                                                            <  2:1646346‑M1/150‑90 (MQ=255)

                                                                                         tGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcg                                                            >  1:1484550‑M1/1‑61 (MQ=255)

                                                                                          gCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcga                                                           <  1:487356‑M1/150‑91 (MQ=255)

                                                                                            gATTTTCAATTATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAGTGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatagaaa                                                         >  2:382552‑M1/1‑58 (MQ=255)

                                                                                            gATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaa                                                         >  1:912754‑M1/1‑58 (MQ=255)

                                                                                              ttttCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatg                                                       <  2:640147‑M1/150‑95 (MQ=255)

                                                                                                ttCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatggg                                                     >  1:1797636‑M1/1‑54 (MQ=255)

                                                                                                 tCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatggga                                                    <  2:1359043‑M1/150‑98 (MQ=255)

                                                                                                 tCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatggga                                                    <  2:1136043‑M1/150‑98 (MQ=255)

                                                                                                   aataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatg                                                  >  2:224881‑M1/1‑51 (MQ=255)

                                                                                                      aatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcatgcaaaaatgaaacaggaataatcgaaatgggatgttg                                               >  2:1813499‑M1/1‑48 (MQ=255)

                                                                                                      aaagcgtGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcataattttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttg                                               <  2:334922‑M1/147‑103 (MQ=255)

                                                                                                       atGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtagttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaattaaacaggaataatcgaaatgggatgttgc                                              >  2:1818489‑M1/1‑47 (MQ=255)

                                                                                                         gCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgc                                            <  2:889465‑M1/150‑106 (MQ=255)

                                                                                                            tGATGCAGATCACACAAAACACTCAATTTCTTACCAAAAATGtataaggcatacttttgttttgggtgtatttcaatctgtaaaaaaggttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcaca                                         <  2:191279‑M1/150‑109 (MQ=255)

                                                                                                             gATTCAGATCACACAAAACACTCAATTACTTAACATATATGtataagtcatacttttgtttagggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacag                                        <  1:972071‑M1/150‑110 (MQ=255)

                                                                                                             gATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacag                                        >  2:1396345‑M1/1‑41 (MQ=255)

                                                                                                               tgaatatcaaaCAAAACACTCAATTACTTAACATAAATGtataattcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtc                                      <  2:1315988‑M1/145‑112 (MQ=255)

                                                                                                                gCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtca                                     <  1:760428‑M1/150‑113 (MQ=255)

                                                                                                                gCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatccgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtca                                     >  2:1130330‑M1/1‑38 (MQ=255)

                                                                                                                      cacacaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataa                               >  2:1720557‑M1/1‑32 (MQ=255)

                                                                                                                       acacaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataac                              >  1:1899224‑M1/1‑31 (MQ=255)

                                                                                                                        cacaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataact                             >  2:343849‑M1/1‑30 (MQ=255)

                                                                                                                                 cTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaa                    >  2:489790‑M1/1‑21 (MQ=255)

                                                                                                                                   cAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaata                  >  1:1080580‑M1/1‑19 (MQ=255)

                                                                                                                                   cAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaata                  >  2:289905‑M1/1‑19 (MQ=255)

                                                                                                                                     aTTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataat                <  1:1084711‑M1/150‑134 (MQ=255)

                                                                                                                                       tACTTAACATAAATGtataagtcatacctttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatca              <  1:405723‑M1/150‑136 (MQ=255)

                                                                                                                                        aCTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcaa             >  2:1791467‑M1/1‑14 (MQ=255)

                                                                                                                                            aaCATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgc         >  1:1140382‑M1/1‑10 (MQ=255)

                                                                                                                                              cATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgcta       >  1:1933281‑M1/1‑8 (MQ=255)

                                                                                                                                                aaaatGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctata     <  2:207175‑M1/149‑145 (MQ=255)

                                                                                                                                                   aTGtataattcatactttagttatgggtgtatttcaatctgttaataagtttttcgctacgctagcaagcaaaaatgaaacaggaatactagaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaat  <  2:584066‑M1/150‑148 (MQ=255)

ATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAAT  >  NC_000913/1978353‑1978649

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`