New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 832307 =NA (NA)14 (0.030) 4/264 NT NA noncoding (19/98 nt) RIP75 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP75 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
?NC_000913 3563589 = NA (NA)noncoding (8/98 nt) RIP256 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP256 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site

CGGTGGCTTATGGGCGGTAAAACAGATAAATTTTTTCCCGTGTTCTCAAATTGCTGACAAGTGCTTGTTGTGAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCATGCAAATTCAATATATTGCAGAGTTCACGTAGGCCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/832462‑832307
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgatGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCATCCGGCATGAACAAAGCGCACTTTGTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTACCG  >  NC_000913/3563589‑3563737
                                                                                                                                                                                                                                                                                                                 
CGGTGGCTTATGGGCGGTAAAACAGATAAATTTTTTCCCGTGTTCTCAAATTGCTGACAAGTGCTTGTTGTGAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCATGCAAATTCAATATATTGCAGAGTTCACGTAGG                                                                                                                                                             <  2:5279005/150‑1
 GGTGGCTTATGGGCGGTAAAACAGATAAATTTTTTCCCGTGTTCTCAAATTGCTGACAAGTGCTTGTTGTGAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCATGCAAATTCTATATATTGCAGAGTTCACGTAGGC                                                                                                                                                            <  2:7158650/150‑1
 GGTGGCTTATGGGCGGTAAAACAGATAAATTTTTTCCCGTGTTCTCAAATTGCTGACAAGTGCTTGTTGTGAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCATGCAAATTCAATATATTGCAGAGTTCACGTAGGC                                                                                                                                                            <  2:758825/150‑1
 GGTGGCTTATGGGCGGTAAAACAGATAAATTTTTTCCCGTGTTCTCAAATTGCTGACAAGTGCTTGTTGTGAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCATGCAAATTCAATATATTGCAGAGTTCACGTAGGC                                                                                                                                                            <  2:7159513/150‑1
 GGTGGCTTATGGGCGGTAAAACAGATAAATTTTTTCCCGTGTTCTCAAATTGCAGACAAGTGCTTGTTGTGAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCATGCAAATTCAATATATTGCAGAGTTCACGTAGGC                                                                                                                                                            <  2:2379604/150‑1
   TGGCTTATGGGCGGTAAAACAGATAAATTTTTTCCCGTGTTCTCAAATTGCTGACAAGTGCTTGTTGTGAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCATGCAAATTCAATATATTGCAGAGTTCACGTAGGCCT                                                                                                                                                          <  1:4960771/150‑1
   TGGCTTATGGGCGGTAAAACAGATAAATTTTTTCCCGTGTTCTCAAATTGCTGACAAGTGCTTGTTGTGAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCATGCAAATTCAATATATTGCAGAGTTCACGTAGGCCT                                                                                                                                                          <  1:2782325/150‑1
   TGGCTTATGGGCGGTAAAACAGATAAATTTTTTCCCGTGTTCTCAAATTGCTGACAAGTGCTTGTTGTGAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCATGCAAATTCAATATATTGCAGAGTTCACGTAGGCCT                                                                                                                                                          <  1:2782391/150‑1
   TGGCTTATGGGCGGTAAAACAGATAAATTTTTTCCCGTGTTCTCAAATTGCTGACAAGTGCTTGTTGTGAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCATGCAAATTCAATATATTGCAGAGTTCACGTAGGCCT                                                                                                                                                          <  2:6700145/150‑1
    GGCTTATGGGCGGTAAAACAGATAAATTTTTTCCCGTGTTCTCAAATTGCTGACAAGTGCTTGTTGTGAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCATGCAAATTCAATATATTGCAGAGTTCACGTAGGCCTG                                                                                                                                                         <  1:107931/150‑1
     GCTTATGGGCGGTAAAACAGATAAATTTTTTCCCGTGTTCTCAAATTGCTGACAAGTGCTTGTTGTGAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCATGCAAATTCAATATATTGCAGAGTTCACGTAGGCCTGA                                                                                                                                                        >  2:2788884/1‑150
     GCTTATGGGCGGTAAAACAGATAAATTTTTTCCCGTGTTCTCAAATTGCTGACAAGTGCTTGTTGTGAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCATGCAAATTCAATATATTGCAGAGTTCACGTAGGCCTGA                                                                                                                                                        <  1:6367124/150‑1
     GCTTATGGGCGGTAAAACAGATAAATTTTTTCCCGTGTTCTCAAATTGCTGACAAGTGCTTGTTGTGAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCATGCAAATTCAATATATTGCAGAGTTCACGTAGGCCTGA                                                                                                                                                        >  1:7227300/1‑150
     GCTTATGGGCGGTAAAACAGATAAATTTTTTCCCGTGTTCTCAAATTGCTGACAAGTGCTTGTTGTGAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCATGCAAATTCAATATATTGCAGAGTTCACGTAGGCCTGA                                                                                                                                                        >  1:7562308/1‑150
      CTTATGGGCGGTAAAACAGATAAATTTTTTCCCGTGTTCTCAAATTGCTGACAAGTGCTTGTTGTGAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCATGCAAATTCAATATATTGCAGAGTTCACGTAGGCCTGAT                                                                                                                                                       <  1:8019866/150‑1
      CTTATGGGCGGTAAAACAGATAAATTTTTTCCCGTGTTCTCAAATTGCTGACAAGTGCTTGTTGTGAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCATGCAAATTCAATATATTGCAGAGTTCACGTAGGCCTGAT                                                                                                                                                       >  1:5097548/1‑150
      CTTATGGGCGGTAAAACAGATAAATTTTTTCCCGTGTTCTCAAATTGCTGACAAGTGCTTGTTGTGAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCATGCAAATTCAATATATTGCAGAGTTCACGTAGGCCTGAT                                                                                                                                                       >  1:5097594/1‑150
      CTTATGGGCGGTAAAACAGATAAATTTTTTCCCGTGTTCTCAAATTGCTGACAAGTGCTTGTTGTGAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCATGCAAATTCAATATATTGCAGAGTTCACGTAGGCCTGAT                                                                                                                                                       <  1:4218007/150‑1
                       AGATAAATTTTTTCCCGTGTTCTCAAATTGCTGACAAGTGCTTGTTGTGAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCATGCAAATTCAATATATTGCAGAGTTCACGTAGGCCTGATGCGCTACGCTTATCAGG                                                                                                                                      <  1:3783926/150‑1
                       AGATAAATTTTTTCCCGTGTTCTCAAATTGCTGACAAGTGCTTGTTGTGAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCATGCAAATTCAATATATTGCAGAGTTCACGTAGGCCTGATGCGCTACGCTTATCAGG                                                                                                                                      <  1:3783226/150‑1
                       AGATAAATTTTTTCCCGTGTTCTCAAATTGCTGACAAGTGCTTGTTGTGAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCATGCAAATTCAATATATTGCAGAGTTCACGTAGGCCTGATGCGCTACGCTTATCAGG                                                                                                                                      <  1:2652277/150‑1
                       AGATAAATTTTTTCCCGTGTTCTCAAATTGCTGACAAGTGCTTGTTGTGAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCATGCAAATTCAATATATTGCAGAGTTCACGTAGGCCTGATGCGCTACGCTTATCAGG                                                                                                                                      <  1:1664730/150‑1
                       AGATAAATTTTTTCCCGTGTTCTCAAATTGCTGACAAGTGCTTGTTGTGAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCATGCAAATTCAATATATTGCAGAGTTCACGTAGGCCTGATGCGCTACGCTTATCAGG                                                                                                                                      <  1:1523342/150‑1
                       AGATAAATTTTTTCCCGTGTTCTCAAATTGCTGACAAGTGCTTGTTGTGAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCATGCAAATTCAATATATTGCAGAGTTCACGAAGGCCTGATGCGCTACGCTTATCAGG                                                                                                                                      <  1:1523299/150‑1
                       AGATAAATTTTGTCCCGTGTTCTCAAATTGCTGACAAGTGCTTGTTGTGAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCATGCAAATTCAATATATTGCAGAGTTCACGTAGGCCTGATGCGCTACGCTTATCAGG                                                                                                                                      <  1:1523733/150‑1
                        GATAAATTTTTTCCCGTGTTCTCAAATTGCTGACAAGTGCTTGTTGTGAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCATGCAAATTCAATATATTGCAGAGTTCACGTAGGCCTGATGCGCTACGCTTATCAGGC                                                                                                                                     <  1:6513851/150‑1
                        GATAAATTTTTTCCCGTGTTCTCAAATTGCTGACAAGTGCTTGTTGTGAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCATGCAAATTCAATATATTGCAGAGTTCACGTAGGCCTGATGCGCTACGCTTATCAGGC                                                                                                                                     <  1:6677675/150‑1
                        GATAAATTTTTTCCCGTGTTCTCAAATTGCTGACAAGTGCTTGTTGTGAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCATGCAAATTCAATATATTGCAGAGTTCACGTAGGCCTGATGCGCTACGCTTATCAGGC                                                                                                                                     <  1:3599230/150‑1
                        GATAAATTTTTTCCCGTGTTCTCAAATTGCTGACAAGTGCTTGTTGTGAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCATGCAAATTCAATATATTGCAGAGTTCACGTAGGCCTGATGCGCTACGCTTATCAGGC                                                                                                                                     <  1:6975090/150‑1
                                                             TGCTTGTTGTGAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCATGCAAATTCAATATATTGCAGAGTTCACGTAGGCCTGATGCGCTACGCTTATCAGGC                                                                                                                                     <  1:3148359/113‑1
                                                             TGCTTGTTGTGAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCATGCAAATTCAATATATTGCAGAGTTCACGTAGGCCTGATGCGCTACGCTTATCAGGC                                                                                                                                     >  2:3148359/1‑113
                                                                                     gaCGTGAACGTCTTATCGGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCAC                                                                        <  2:1712442/148‑1
                                                                                                                                                  acacccaGATGCGCTACGCTTAACACCCCTACGTGGTTTATCCAATATATTGAATTAGCATGGACTTGTAGGCCAGATAAGACGTTCACGTCGCATCCGGCATGAACAAAGCGCACTTTGTCAAAAATCTAACCTACTTTTTAATTCAGG           <  2:7837176/143‑1
                                                                                                                                                     GCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCATCCGGCATGAACAAAGCGCACTTTGTCAAAAATCTAACCTACTTTTTAATTCAGGGAA        <  2:4353172/150‑1
                                                                                                                                                     GCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCATCCGGCATGAACAAAGCGCACTTTGTCAAAAATCTAACCTACTTTTTAATTCAGGGAA        >  2:5597289/1‑150
                                                                                                                                                     GCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCATCCGGCATGAACAAAGCGCACTTTGTCAAAAATCTAACCTACTTTTTAATTCAGGGAA        <  2:6692324/150‑1
                                                                                                                                                        TGATGCGCTACGCTTATCAGGCCTACGTTGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCATCCGGCATGAACAAAGCGCACTTTGTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTA     <  2:5497679/150‑1
                                                                                                                                                        TGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCATCCGGCATGAACAAAGCGCACTTTGTCAAAAATCTAACCTACTTTTTAATTCAGGGACTTA     >  1:5597186/1‑150
                                                                                                                                                        TGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCATCCGGCATGAACAAAGCGCACTTTGTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTA     >  1:3216028/1‑150
                                                                                                                                                        TGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCATCCGGCATGAACAAAGCGCACTTTGTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTA     >  1:4527246/1‑150
                                                                                                                                                        TGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCATCCGGCATGAACAAAGCGCACTTTGTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTA     >  1:7299895/1‑150
                                                                                                                                                         GATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCATCCGGCATGAACAAAGCGCACTTTGTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTAC    <  2:5912610/150‑1
                                                                                                                                                         GATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCATCCGGCATGAACAAAGCGCACTTTGTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTAC    >  1:6953021/1‑150
                                                                                                                                                         GATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCATCCGGCATGAACAAAGCGCACTTTGTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTAC    <  2:5912169/150‑1
                                                                                                                                                          ATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCATCCGGCATGAACAAAGCGCACTTTGTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTACC   <  2:6546208/150‑1
                                                                                                                                                          ATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCATCCGGCATGAACAAAGCGCACTTTGTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTACC   <  2:742498/150‑1
                                                                                                                                                          ATGCGCGACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCATCCGGCATGAACAAAGCGCACTTTGTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTACC   <  1:7306868/150‑1
                                                                                                                                                           TGCGCTACGCTTATCAGGCCTACGTGGTTTCTGCAATATATGGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCATCCGGCATGAACAAAGCGCACTTTGTCAAAAATCTACCCTACTTTTTAATTCAGGGAATTACCG  <  2:6434251/150‑1
                                                                                                                                                           TGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCATCCGGCATGAACAAAGCGCACTTTGTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTACCG  <  2:2715819/150‑1
                                                                                                                                                           TGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCATCCGGCATGAACAAAGCGCACTTTGTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTACCG  <  1:5175703/150‑1
                                                                                                                                                           TGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCATCCGGCATGAACAAAGCGCACTTTGTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTACCG  <  2:2545342/150‑1
                                                                                                                                                           TGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCATCCGGCATGAACAAAGCGCACTTTGTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTACCG  <  2:2715825/150‑1
                                                                                                                                                                                                                                                                                                                 
CGGTGGCTTATGGGCGGTAAAACAGATAAATTTTTTCCCGTGTTCTCAAATTGCTGACAAGTGCTTGTTGTGAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCATGCAAATTCAATATATTGCAGAGTTCACGTAGGCCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/832462‑832307
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgatGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCATCCGGCATGAACAAAGCGCACTTTGTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTACCG  >  NC_000913/3563589‑3563737

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.