| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 164,581 | A→C | 17.1% | intergenic (+47/‑149) | hrpB → / → mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 164,581 | 0 | A | C | 17.1% | 237.2 / 18.9 | 133 | intergenic (+47/‑149) | hrpB/mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| Reads supporting (aligned to +/- strand): ref base A (40/68); new base C (4/21); total (44/89) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.84e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 133 total aligned reads displayed.
CGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAA > NC_000913/164433‑164727 | cGTGAGGTGCAAAAAGAGATGCAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACGGCACCGACGCTACGGACGACAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCAt < 2:3899856/150‑1 (MQ=255) gTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCACACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTc > 1:3963338/1‑150 (MQ=255) gTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATc > 1:1676174/1‑150 (MQ=255) tGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAACAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCa > 1:4102360/1‑150 (MQ=255) agagATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGCAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCCCGG‑tc > 2:3827422/1‑150 (MQ=255) agaTGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑tcac > 2:2400052/1‑150 (MQ=255) gAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑tcacccac > 2:4128449/1‑148 (MQ=255) gAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGG‑gcacccac > 1:3057933/1‑148 (MQ=255) aaaGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑tcacccaca > 1:683817/1‑150 (MQ=255) gggCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑tcacccacaccc > 1:977471/1‑150 (MQ=255) gggCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑gcgcccgcaccc > 1:2797349/1‑150 (MQ=255) ggCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑tgccccccaccca > 2:301235/1‑149 (MQ=255) cGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑GCACCcccaacccaa > 2:466972/1‑150 (MQ=255) cGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCACTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑TCACCCTCACCCaaa > 1:4188783/1‑150 (MQ=255) gTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑TCACCCCCACCCCAAc > 2:2619388/1‑150 (MQ=255) ttACCCCAAACTTGTCGGGCGGGACGCCCCGGAAACTACGGAACCTCCGCGCCGGACTAAAACGTATTGTTATGTTTGGTTTTCTCCCCCTCCGTGTGGTAGAGGGCGGGGTTGCGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAAcc < 2:1634472/150‑1 (MQ=255) ccACACCTGTGTGGCCGGCCGACCCGGCAAATACTGCCCCGACGCGACGGACTAAAATTTATTCTTATGGTTGGTTTTCCCCCTCCCCCTGTGGGTGAGGGCGGGGGTGAGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCtctc < 2:1958027/150‑1 (MQ=37) ccAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑TGGCCACCACCCCAAcacacaa > 2:3175504/1‑144 (MQ=37) ccAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑GGGCCCCCCCCCCAAcccacaa > 1:2304671/1‑146 (MQ=37) ccAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGG‑TGCCCCGCACCCAAAcccacac > 2:4144503/1‑146 (MQ=38) ccAAACATGTCTGGCCGGACGACCCGGAAAATACTGCACCGACGCGACGGACTAAAAATTATTGTTACGGTTGGTTTTCTCCCTCCCCCTGTGGGAGTGGGCGGGGGTGAGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCtctc < 2:3027375/150‑1 (MQ=38) cAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCCGCGCGCACGT‑GCCCCCCCACCCGAAcccacgcc > 1:3072775/1‑145 (MQ=38) cAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑TGACCCGCACCCAAAacccaacc > 1:2613620/1‑145 (MQ=38) cAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑GGGCCCCCCCCCAAAcccacccc > 1:729982/1‑145 (MQ=37) ccttGTCTGGCCGGACGACGCGGCAATTAGTCCACCGAGGCGCCGTCCGACAAATATTTGGTAGGGTGGTTTTTCTCCCGCTCCGTGTGGTAGTGGGCGGGGGTGCGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTc < 2:2833880/147‑1 (MQ=255) actggTCTGGCCGGACGACCCGGAAAATACTGCCCCGACGCGCCGGACGAAAAAGTTTTCTTATGGTTGGTTTTCTCCCTCTCCCTGTGGGTGAGGGCGGGGGTGAGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTc < 1:3831493/146‑1 (MQ=37) acccgccTGGCCGGACCACCCGGAAAATACCGCCCCGCCGCCCCGGACTAAAAAGTATTCGTACGGTGGGTTTTCCCCCTCCCCCGGGGGGAGTGGGCCGGGGTGCGGGCCTCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTc < 1:3085644/144‑1 (MQ=255) aCAGGTCTGGCCGGACGCCCCGGCAAATACTGCCCCGCCGCGACGGACTAAAACGTATTGGTAAGGTTGGTTTTCCCCCTCCCCCTGTGGGAGCGGGCCGGGGTGCGGGCCTCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTc < 2:2910537/150‑1 (MQ=255) ctGTCGGGCCGGACGACCGGCAAAATCCGGAACCGCCGCGACGTACTAAATTTTTTTGTTTTGTTTGTTTTTCTCCCACCCCGTGTGGGAGCGGGCGGTGTTTCGGGCCTCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCaa < 2:1086768/149‑1 (MQ=255) agctCTGGCCGGACGACCCGCAAAATACTGCACCGACGCGACGGACGAAAAATTATTCGTAAGGTTGGTTTTCTCCCTCTCCCGGTGGGAGTGGGCCGGGGGGAGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCaa < 2:59404/147‑1 (MQ=255) aTGTCTGGCCGGACGACCCGGCAAATACTGCACCGAGGCGCCGGACGAAAAAGTATTGGTATGGTTGTTTTTCTCCCTCTCCCTGTGGTAGTGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCaa < 2:1687721/150‑1 (MQ=38) aTGTCTGGCCGGACGACCCGGAAATTCCTCCACCGACGCGCCGGACTAAAATGTATTCGTACGGTTGGTTTTCCCCCTCTCCCGGTGGGAGTGGGCCGGGGTGAGGGCCTCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCaa < 2:3255373/150‑1 (MQ=255) aTGTCTGGCCGGACCACCCGGCAAATACTCCACCCACGCGACGGACGAAAAAGTATTCGTAAGGTTGTTTTTCTCCCTCTCCCTGGGGGAGAGGCCCGGGGTGAGGGCCTCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCaa < 2:2922286/150‑1 (MQ=255) aTGTCGGGCCGGACGCCCCGGCAAATACGGCACCGACGCGCCGGACGAAAAAGTATTCGTATGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCaa < 2:438547/150‑1 (MQ=38) aTGTCGGGCCGCACGACCCGCCAAATCCCCCACCGCCGCGCCGCCCCAAAAAGTATTCCTACGGTTGGTTTTCTCCCACCCCCTGTGGGTGAGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCaa < 2:814044/150‑1 (MQ=25) ggTCGGGCGGGACCACCCGGCAAATTCTGCACGGACGCGCCGGACGAAAATTTATTCGTACGGTTGGTTTTCTCCCCCCCCGTGTGGGAGCGGGCCGGGGTGCGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAg < 2:745408/149‑1 (MQ=255) gTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAgg < 2:3145354/150‑1 (MQ=255) gTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑GGCCCCGCCCCCCAACCCACAccccccacg > 1:1801300/1‑144 (MQ=37) tGGCGGGACGACCCGGAAAATACTGCACCGCCGCGACGGACGAAAAAGTATTCGTACGGTGGGTTTTCTCCCTCGCCCTGTGGGAGTGGGCCGGGGTGAGGGCCTCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGgag < 2:1335041/150‑1 (MQ=255) tGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑GGGCCCCCACCCAAAACCAATCCCACAAgggcg > 1:1677964/1‑148 (MQ=37) gccggccgCCCCGGAAAATACGCCACCGCCGCGCGGTACTAAAATTTTTTGGTATGTTTGGTTGTCCCCCCCTCCGTGTGGGCGGGGGCCGGGGGGCGGGCCTCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGagag < 1:1614152/150‑1 (MQ=255) gCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑TGACCCACACCCAAACACACACCCACAAcggggcg > 2:1544559/1‑146 (MQ=37) gCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑TCACCCACACCCAAACCCACACCCACCAGGGagag > 2:3438385/1‑150 (MQ=38) gCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑GGACCCCCACCCCAACCCCCACCCCCCAggggggg > 2:3635484/1‑146 (MQ=37) gCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑GGACACTCACCCAATCACACACCCGCAAggggggg > 2:1544541/1‑146 (MQ=37) ccGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAATGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGG‑TCACCCTCACCCTAACCCTCTCCCTTGAGGGAGAgg < 2:3503784/150‑1 (MQ=255) ccGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTTGAGGGAGAgg < 2:2700728/150‑1 (MQ=255) ccGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTTGAGGGAGAgg < 2:1409280/150‑1 (MQ=255) ccGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑GGACACCCACCCAAACCCACACACCCAAgggggggg > 1:2872566/1‑145 (MQ=25) ccGGACGACCCGCCAAATACGGCACCGACGCGCCGGACGAAAAAGTATTCGTATGGTTGGTTTTCTCCCACTCCCTGTGGGATAGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTTGAGGGAGAgg < 2:3262506/150‑1 (MQ=38) cGGACGCCCCGGCAACGACTGCCCCGAGCCGCCGGACGAAAACGTATTCGTACGGTTGGTTTTCCCCCACTCCCGGTGGGAGCGGGCCGGGGTGCGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAggg < 1:3010141/150‑1 (MQ=255) gacgccCCGGCAAATACTGCACCGACGCGCGGGACTAAAAATTTTTCGTACGTTTGTTTTCCTCCCTCGCCCTGTGGTTGTGGCCGGGGGTGAGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGa < 2:3989231/150‑1 (MQ=255) gacgacCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGa < 2:1034608/150‑1 (MQ=255) gacCCGGCAAATCCTGCACCGACGCGCCGGACGAAAAAGTATTCGTATGGTTGGTTTTCTCCCTCTCCCTGTGGGAGCGGGCCGGGGTGCGGGCCTCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTTGAGGGAGAgggttagg < 2:2343394/150‑6 (MQ=38) ccGGCAAATCCTCCCCCGCCGCGCCGGCCGAAAACGTTTTCGTATGTTGGTTTTTCGCCCGCTCCGTGTGGGAGTGGGCCGGGGGGCGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATc < 1:4128449/150‑1 (MQ=255) ccGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCCGCGCGCACGTGGCACCC‑CACCCCAACCCACACCCACAAGGGCGAGGGGACCGCTc > 1:957116/1‑150 (MQ=25) ggCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGa < 2:2736759/150‑1 (MQ=255) ccccGACGCGACGTACTAAAATTTTTCCGTCTGTTTGTTTTACACCCTCTCCCTGTGGGTGTGGGCGGGGGTGCGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑CACAAAtttt < 1:424201/148‑1 (MQ=255) ccgccgCGAGGCACTAATATGTATTGGTATGGTGGGTTGGCGCCCTCCCCGGGTGGGTGTGGGCGGGGGTGGGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑CACAAATTTTga < 1:57849/150‑1 (MQ=255) ccGACGCTACGCACGAAAAATTATTCTTAAGGTTGGTTTTCTCCCTCTCCCTGTGGTAGAGGGCCGGGGTGTGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑CACAAATTTTga < 1:957421/150‑1 (MQ=38) ccGACGCGACGGCCGAAAAAGTATTCGTACGGTTGGTGTTCTCCCTCTCCCTGGGGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑CACAAATTTTga < 2:669317/150‑1 (MQ=39) gacgcgacgGACTAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCGCCCTGTGGGCGAGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑CACAAATTTTgaga < 1:952935/150‑1 (MQ=255) gacgcgacgGACGAAAAAGTTTTCGTACGGTTGGTTTTCTCCCTCCCCCTGGGGGAGCGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑CACAAATTTTgaga < 2:1720248/150‑1 (MQ=39) acgcgacgGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGT‑GGCCCCACCCCCCAACCCACACCCACAAGCGCGGGGGGGCCGCGCCAG‑‑CCCCAAATTTgtgag > 1:4098263/1‑150 (MQ=16) gacggacgAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGG‑GCACCCACCCCCCCACCAAAAACCCCAAAGGAGAGGGGGCCCCACGAGCCCAAAAATTTTgagaaaa > 1:1317486/1‑147 (MQ=12) gacggacgAAAAAGTATTCGTAAGGGTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCCGCGCGCACGT‑TCACCCACACCCTAACCCTCTCCCGCCAGGGAGCGGGGACCGATCGCG‑‑CACCAAATTTGAGAGatat > 2:3128375/1‑150 (MQ=37) ggacgAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑GCACCCACACCCAAACCCACTACCTACAGGGGGAGGGGCCCCCTCGCG‑‑CACAAAATTTGGGGGATAtctt > 2:311300/1‑150 (MQ=21) atttATTCGTTTGGTTGGTTTCCCCCCTCCCGGGGGGGGTGGGGGCCGGGGTGCGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑CACAAATTTTGAGAGATATCTTCTTCTGTc < 1:1219389/147‑1 (MQ=255) gttttCTTATGGTTGGTTTTCTCCCTCTCCGTGGGGGCGTGGGCGGGGGTGCGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCtt < 1:2400052/147‑1 (MQ=255) tATTCGTATGGTTGGTTTTCGCCCTCTCCCGGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTg < 2:1710035/150‑1 (MQ=255) aTTCTTAAGTTTGGTTTTCTCCCTCTCCCTGTGGGTGTGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGt < 1:2045120/150‑1 (MQ=255) cGTACGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAAc < 2:1774761/150‑1 (MQ=255) gTACGGTTGGTTGCCCCCCCCCCCCGGGGGGAGCGGGCCGGGGTGCGGGCCTCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACa < 1:3418600/150‑1 (MQ=255) tatggttggttTTCTCCCGCTCCCTGGGGGTGTGGGCGGGGGTGAGGGCCTCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACag < 2:152232/147‑1 (MQ=255) gtttggttTTCCCCCTCGCCCTGTGGGAGTGGGCGGGGGTGAGGGCCTCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACagaag < 1:3901874/148‑1 (MQ=255) gttgtttTTCTCCCTCCCCCTGGGGTAGTGGGCGGGGGTGTGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACagaaga < 2:2482990/150‑1 (MQ=255) ttggttTTCTCCCTCTCGGTGTGGGTGTGGGCCGTGGTGATGGCCTCAGCGCTCTCGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAgaagaa < 1:3393039/150‑1 (MQ=255) ttggttTTCTCCCTCTCCGTGTGGGCGTGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAgaagaa < 2:3072775/150‑1 (MQ=255) tgggttTCCTCGCTCGCCGGGTGGTAGCGGGCGGGGGTTCGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAgaagaa < 1:3186946/148‑1 (MQ=255) gtttttCTCCCTCCCCCTGTGGGTGAGGGCGGGGGTGAGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACa < 1:2813077/148‑1 (MQ=255) gttTTCTCCCTCTCCGTGGGGGTGTGGGCGGGGGTGAGGGCCTCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAg < 1:780141/150‑1 (MQ=255) ccctctccctGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCg < 1:2774371/150‑1 (MQ=255) ctctccgtGGGGGTGTGGGCGGGGGTGCGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCggg < 1:2939502/150‑1 (MQ=255) ccgggtgGGTGTGGGCGGGGGTGTGGCCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCttt < 1:3273145/146‑1 (MQ=255) ccctGTGGGTGTGGGCCGGGGTGCGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCttt < 1:301235/150‑1 (MQ=255) cctGGGGGAGAGGGCGGGGGTGCGGGCCTCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCtttt < 1:1522174/150‑1 (MQ=255) ggggtgtgggCGGGGGTGCGGGCCTCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTgcgc < 1:3633608/143‑1 (MQ=255) ggtgagGGCCGGGGTGCGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCt < 2:2304671/147‑1 (MQ=255) ggAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCt < 1:2793826/150‑1 (MQ=255) ggAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑GCACCCACAACCCAACCCAAAACCACAACGGAGAGGGGACCGATCCAG‑‑CCCAAAATTTTAGATATATATTAATATGTATTGTAAAATAAGAACAGAAAATCGGGCGTTTGAGccg > 2:2046446/1‑149 (MQ=255) cgcgggCCGGGGTGCGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGa < 1:3181261/147‑1 (MQ=255) agtgggCCGGGGTGAGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGa < 1:2039659/147‑1 (MQ=255) cgggggTGAGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTg < 1:2269054/148‑1 (MQ=255) ccGGGGTGAGGGCATCAGCGCGCACGT‑TGACCCACAACCAAAAACAAAAACACAAGCGAGAGGGGGCCGATCGAG‑‑CACAAATATTTAGAGATATAATGTTCTTTGTTGTAAAATAAGAAAAGAAAATAGGGCGTTTTGGCCGGAATATTg > 2:4005530/1‑150 (MQ=255) ccGGGGTGAGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTg < 2:2797349/150‑1 (MQ=255) cGGGGTGAGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGc < 2:3276145/150‑1 (MQ=255) ggggTGTGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCg < 2:3375369/150‑1 (MQ=255) gggttcgggCCTCAGCGAGCACGT‑TCACCCTCACCCTAACCCTCTACCTCAAGGGAGAGGGGACCGATCGAG‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACCGAAGAACAGTAAATCGGGCTTTTGCGCCTGAATATTGCgg < 2:3479439/144‑1 (MQ=255) ggTTAGGTCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGga < 2:2811213/150‑1 (MQ=255) ggTGCGGGCCTCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGga < 1:2514564/150‑1 (MQ=255) | CGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAA > NC_000913/164433‑164727 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |