| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1190580 = | NA (NA) | 4 (0.040) | 4/266 | NT | NA | noncoding (1/23 nt) | REP106 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP106 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 1190603 = | NA (NA) | intergenic (‑156/+13) | phoP/purB | response regulator in two‑component regulatory system with PhoQ/adenylosuccinate lyase | |||||
GCATGAAGCAGTTTATCGATGGTCTGGCGTTGCCAGAAGAAGAGAAAGCCCGCCTGAAAGCGATGACGCCGGCTAACTATATTGGTCGAGCTATCACGATGGTTGATGAGCTGAAATAAACCTCGTATCAGTGCCGGATGGCGATGCTGTCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1190734‑1190580‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccggcACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGCTTTCAGGCGGGCTTTCTCTTCTTCTGGCAACGCCAGACCATCGATAAACTGCTT > NC_000913/1190603‑1190729 GCATGAAGCAGTTTATCGATGGTCTGGCGTTGCCAGAAGAAGAGAAAGCCCGCCTGAAAGCGATGACGCCGGCTAACTATATTGGTCGAGCTATCACGATGGTTGATGAGCTGAAATAAACCTCGTATCAGTGCCGGATGGCGATGCTGT > 1:1447865/1‑150GCATGAAGCAGTTTATCGATGGGCTGGCGTTGCCAGAAGAAGAGACAGCCCGCCTGAAAGCGATGACGCCGGCTAACTATATTGGTCGAGCTATCACGATGGTTGATGAGCTGAAATAAACCTCGTATCAGTGCCGGATGGCGATGCTGT < 1:793727/150‑1 AAGCAGTTTATCGATGGTCTGGCGTTGCCAGAAGGAGAGAAAGCCCGCCTGAAAGCGATGACGCCGGCTAACTATATTGGTCGAGCTATCACGATGGTTGATGAGCTGAAATAAACCTCGTATCAGTGCCGGATGGCGATGCTGTCCGGC > 1:837411/1‑150 AAGCAGTTTATCGATGGTCTGGCGTTGCCAGAAGAAGAGAAAGCCCGCCTGAAAGCGATGACGCCGGCTAACTATATTGGTCGAGCTATCACGATGGTTGATGAGCTGAAATAAACCTCGTATCAGTGCCGGATGGCGATGCTGTCCGGC > 2:1450619/1‑150 GAAATAAACCTCGTATCAGTGCCGGATGGCGATGCTGTCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGCTTTCAGGCGGGCTTTCTCTTCTTCTGG < 1:526752/143‑1 GAAATAAACCTCGTATCAGTGCCGGATGGCGATGCTGTCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGCTTTCAGGCGGGCTTTCTCTTCTTCTGG > 2:526752/1‑143 TGCCGGATGGCGATGCTGTCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGCTTTCAGGCGGGCTTTCTCTTCTTCTGGCAACGCCAGACCATCGATAAACTGCT > 1:1884444/1‑150 GCCGGATGGCGATGCTGTCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGCTTTCAGGCGGGCTTTCTCTTCTTCTGGCAACGCCAGACCATCGATAAACTGCTT > 1:609350/1‑150 GCATGAAGCAGTTTATCGATGGTCTGGCGTTGCCAGAAGAAGAGAAAGCCCGCCTGAAAGCGATGACGCCGGCTAACTATATTGGTCGAGCTATCACGATGGTTGATGAGCTGAAATAAACCTCGTATCAGTGCCGGATGGCGATGCTGTCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1190734‑1190580‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccggcACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGCTTTCAGGCGGGCTTTCTCTTCTTCTGGCAACGCCAGACCATCGATAAACTGCTT > NC_000913/1190603‑1190729 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |