| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1294158 = | 107 (0.950) | 5 (0.050) | 4/260 | NT | 5.1% | intergenic (+14/+268) | tdk/insZ | thymidine kinase/deoxyuridine kinase/pseudogene, transposase homolog |
| ? | NC_000913 | 1294195 = | 86 (0.820) | intergenic (+51/+231) | tdk/insZ | thymidine kinase/deoxyuridine kinase/pseudogene, transposase homolog | |||||
AGGGATATTGTACTTTACAGGTCACAAGTCAACGTCGGTGCTTAAGAGCCCTGTGAGGCGTATAGCGGCGTTAAAAAACTGCCGAGAAGGGTATATAGCCCGGAAGAAGTGCGTAAAACGAACTGACAGGATAAAAGTGCCCTGCTCACCCTGTCAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1294315‑1294158‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgtcagtTCGTTTTACGCACTTCTTCCGGGCTATATACCCTTCTCGGCAGTTTTTTAACGCCGCTATACGCCTCACAGGGCTCTTAAGCACCGACGTTGACTTGTGACCTGTAAAGTACAATATCCCTGTGTTTAGGCGTTATACATCGTCGC > NC_000913/1294195‑1294340 AGGGATATTGTACTTTACAGGTCACAAGTCAACGTCGGTGCTTATGAGCCCTGTGAGGCGTATAGCGGCGTTAAAAAACTGCCGAGAAGGGTATATAGCCCGGAAGAAGTGCGTAAAACGAACTGACAGGATAAAAGTGCCCTGCTCACC < 1:1224056/150‑1 GGGATATTGTACTTTACAGGTCACAAGTCAACGTCGGTGCTTAAGAGCCCTGTGAGGCGTATAGCGGCGTTAAAAAACTGCCGAGAAGGGTATATAGCCCGGAAGAAGTGCGTAAAACGAACTGACAGGATAAAAGTGCCCTGCTCACCC < 2:1722726/150‑1 GGGATATTGTACTTTACAGGTCACAAGTCAACGTCGGTGCTTAAGAGCCCTGTGAGGCGTATAGCGGCGTTAAAAAACTGCCGAGAAGGGTATATAGCCCGGAAGAAGTGCGTAAAACGAACTGACAGGATAAAAGTGCCCTGCTCACCC > 2:1063591/1‑150 GGATATTGTACTTTACAGGTCACAAGTCAACGTCGGTGCTTAAGAGCCCTGTGAGGCGTATAGCGGCGTTAAAAAACTGCCGAGAAGGGTATATAGCCCGGAAGAAGTGCGTAAAACGAACTGACAGGATAAAAGTGCCCTGCTCACCCT > 1:1263212/1‑150 TATTGTACTTTACAGGTCACAAGTCAACGTCGGTGCTTAAGAGCCCTGTGAGGCGTATAGCGGCGTTAAAAAACTGCCGAGAAGGGTATATAGCCCGGAAGAAGTGCGTAAAACGAACTGACAGGATAAAAGTGCCCTGCTCACCCTGTC < 2:1658230/150‑1 TTGTACTTTACAGGTCACAAGTCAACGTCGTTGCTTAAGAGCCCTGTGAGGCGTATAGCGGCGTTAAAAAACTGCCGAGAAGGGTATATAGCCCGGAAGAAGTGCGTAAAACGAACTGACAGGATAAAAGTGCCCTGCTCACCCTGTCAG < 1:826309/150‑1 TTGTACTTTACAGGTCACAAGTCAACGTCGGTGCTTAAGAGCCCTGTGAGGCGTATAGCGGCGTTAAAAAACTGCCGAGAAGGGTATATAGCCCGGAAGAAGTGCGTAAAACGAACTGACAGGATAAAAGTGCCCTGCTCACCCTGTCAG < 2:1398814/150‑1 TTGTACTTTACAGGTCACAAGTCAACGTCGGTGCTTAACAGCCCTGTGAGGCGTATAGCTGCGTTAAAAAACTGCCGAGAAGGGTATATAGCCCGGAAGAAGTGCGTAATACGAACTGACAGGATAAAAGTGCCCTGCTCACCCTGTCAG < 1:1141939/150‑1 AACGAACTGACAGGATAAAAGTGCCCTGCTCACCCTGTCAGTTCGTTTTACGCACTTCTTCCGGGCTATATACCCTTCTCGGCAGTTTTTTAACGCCGCTATACGCCTCACAGGGCTCTTAAGCACCGACGTTGACTTGTGACCTGTAAA > 2:643973/1‑150 CGAACTGACAGGATAAAAGTGCCCTGCTCACCCTGTCAGTTCGTTTTACGCACTTCTTCCGGGCTATATACCCTTCTCGGCAGTTTTTTAACGCCGCTATACGCCTCACAGGGCTCTTAAGCACCGACGTTGCCTTGTGACCTGTAAAGT > 2:967291/1‑150 GAACTGACAGGATAAAAGTGCCCTGCTCACCCTGTCAGTTCGTTTTACGCACTTCTTCCGGGCTATATACCCTTCTCGGCAGTTTTTTAACGCCGCTATACGCCTCACAGGGCTCTTAAGCACCGACGTTGACTTGTGACCTGTAAAGTA > 2:1601081/1‑150 ACTGACAGGATAAAAGTGCCCTGCTCACCCTGTCAGTTCGTTTTACGCACTTCTTCCGGGCTATATACCCTTCTCGGCAGTTTTTTAACGCCGCTATACGCCTCACAGGGCTCTTAAGCACCGACGTTGACTTGTGACCTGTAAAGTACA > 2:1711168/1‑150 ACTGACAGGATAAAAGTGCCCTGCTCACCCTGTCAGTTCGTTTTACGCACTTCTTCCGGGCTATATACCCTTCTCGGCAGTTTTTTAACGCCGCTATACGCCTCACAGGGCGCTTAAGCACCGACGTTGACTTGTGACCTGTAAAGTACA > 2:196601/1‑150 TGTCAGTTCGTTTTACGCCCTTCTTCCGGGCTATATACCCTTCTCGGCAGTTTTTTAACGCCGCTATACGCCTCACAGGGCTCTTAAGCACCGACGTTGACTTGTGACCTGTAAAGTACAATATCCCTGTGTTTAGGCGTTATACATCGT < 1:1734277/150‑1 TGTCAGTTCGTTTTACGCACTTCTTCCGGGCTATATACCCTTCTCGGCAGTTTTTTAAAGCCGCTATACGCCTCACAGGGCTCTTAAGCACCGACGTTGACTTGTGACCTGTAAAGTACAATATCCATGTGTTTAGGCGTTATACATCGT > 2:1050772/1‑150 TCAGTTCGTTTTACGCACTTCTTCCGGGCTATATACCCTTCTCGGCAGTTTTTTAACGCCGCTATACGCCTCACAGGGCTCTTAAGCACCGTCGTTGACTTGTGACCTGTAAAGTACAATATCCCTGTGTTTAGGCGTTATACATCGTCG < 1:780001/150‑1 TCAGTTCGTTTTACGCACTTCTTCCGGGCTATATACCCTTCTCGGCAGTTTTTTAACGCCGCTATACGCCTCACAGGGCTCTTAAGCACCGACGTTGACTTGTGACCTGTAAAGTACAATATCCCTGTGTTTAGGCGTTATACATCGTCG < 2:982222/150‑1 aAGTTCGTTTTACTCAGTTCTTTCGTGCTATATACCCTTCTCTGGAGGTTTTTAACGCCGCTATACGCCTGACAGGGCTCTTAAGCACCGACGTTGACTTGTGACCTGTAAAGTACAATATCCCTGTGTTTAGGCGTTATACATCGTCGC < 1:137909/149‑1 CAGTTCGTTTTACGCACTTCTTCCGGGCTATATACCCTTCTCGGCAGTTTTTTAACGCCGCTATACGCCTCACAGGGCTCTTAAGCACCGACGTTGACTTGTGACCTGTAAAGTACAATATCCCTGTGTTTAGGCGTTATACATCGTCGC < 2:490139/150‑1 AGGGATATTGTACTTTACAGGTCACAAGTCAACGTCGGTGCTTAAGAGCCCTGTGAGGCGTATAGCGGCGTTAAAAAACTGCCGAGAAGGGTATATAGCCCGGAAGAAGTGCGTAAAACGAACTGACAGGATAAAAGTGCCCTGCTCACCCTGTCAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1294315‑1294158‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgtcagtTCGTTTTACGCACTTCTTCCGGGCTATATACCCTTCTCGGCAGTTTTTTAACGCCGCTATACGCCTCACAGGGCTCTTAAGCACCGACGTTGACTTGTGACCTGTAAAGTACAATATCCCTGTGTTTAGGCGTTATACATCGTCGC > NC_000913/1294195‑1294340 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |