| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4312015 = | 95 (0.850) | 5 (0.050) | 3/258 | NT | 5.5% | coding (28/936 nt) | alsB | D‑allose ABC transporter periplasmic binding protein |
| ? | NC_000913 | 4312112 = | 83 (0.800) | coding (880/891 nt) | alsR | d‑allose‑inducible als operon transcriptional repressor; autorepressor; repressor of rpiR | |||||
TGAACAAGCTAATATTAATATGCAAAAAACCGGCGCAATTGTTGATTTCTTCTCACCAGGCGCGCTGAAATAAGAAAAAGGTAATTCCGCCATCGCGGAGTTACCTGTCCCCTTACCGTGAGAACATTATTATGAATAAATATCTGAAATATTTCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4312173‑4312015‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tatttcagcgCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCATATTAATATTAGCTTGTTCAATGTTGAGCTGGGCGACAGAGACAAAAAAAGCGTCCAGCAAAGTTAGTTGTAATATTCTTGCCGAGGCATTACGACCTAAT > NC_000913/4312112‑4312254 TGAACAAGCTAATATTAATATGCAAAAAACCGGCGCAATTGTTGATTTCTTCTCACCAGGCGCGCTGAAATAAGAAAAAGGTAATTCCGCCATCGCGGAGTTACCTGTCCCCTTACCGTGAGAACATTATTATGAATAAATATCTGAAAT > 1:500675/1‑150 GAACAAGCTAATATTAATATGCAAAAAACCGGCGCAATTGTTGATTTCTTCTCACCAGGCGCGCTGAAATAAGAAAAAGGTAATTCCGCCATCGCGGAGTTACCTGTCCCCTTACCGTGAGAACATTTTTATGTATAAATATCTGAAATA > 1:117660/1‑150 GAACAAGCTAATATTAATATGCAAAAAACCGGCGCAATTGTTGATTTCTTCTCACCAGGCGCGCTGAAATAAGAAAAAGGTAATTCCGCCATCGCGGAGTTACCTGTCCCCTTACCGTGAGAACATTATTATGAATAAATATCTGAAATA > 1:401233/1‑150 AAGCTAATATTAATATGCAAAAAACCGGCGCAATTGTTGATTTCTTCTCACCAGGCGCGCTGAAATAAGAAAAAGGTAATTCCGCCATCGCGGAGTTACCTGTCCCCTTACCGTGAGAACATTATTATGAATAAATATCTGAAATATTTC < 1:1849806/150‑1 AGCTAATATTAATATGCAAAAAACCGGCGCAATTGTTGATTTCTTCTCACCAGGCGCGCTGAAATAAGAAAAAGGTAATTCCGCCATCGCGGAGTTACCTGTCCCCTTACCGTGAGAACATTATTATGAATAAATATCTGAAATATTTCA > 1:1419840/1‑150 AGCTAATATTAATATGCAAAAAACCGGCGCAATTGTTGATTTCTTCTCACCAGGCGCGCTGAAATAAGAAAAAGGTAATTCCGCCATCGCGGAGTTACCTGTCCCCTTACCGTGAGAACATTATTATGAATAAATATCTGAAATATTTCA > 1:1441472/1‑150 AGCTAATATTAATATGCAAAAAACCGGCGCAATTGTTGATTTCTTCTCACCAGGCGCGCTGAAATAAGAAAAAGGTAATTCCGCCATCGCGGAGTTACCTGTCCCCTTACCGTGAGAACATTATTATGAATAAATATCTGAAATATTTCA > 2:1283143/1‑150 tCTAATATTAATATTCAAAAAACCGGAGCAATTGTTGATTTCTTCTCACCAGGCGCGCTGAAATAAGAAAAAGGTAATTCCGCCATCGCGGAGTTACCTGTCCCCTTACCGTTAGAACATTATTATGAATAAATATCTGAAATATTTCAG < 2:915296/149‑1 GCTAATATTAATATGCAAAAAACCGGCGCAATTGTTGATTTCTTCTCACCAGGCGCGCTGAAATAAGAAAAAGGTAATTCCGCCATCGCGGAGTTACCTGTCCCCTTACCGTGAGAACATTATTATGAATAAATATCTGAAATATTTCAG < 2:1284274/150‑1 CTAATATTAATATGCAAAAAACCGGCGCAATTGTTGATTTCTTCTCACCAGGCGCGCTGAAATAAGAAAAAGGTAATTCCGCCATCGCGGAGTTACCTGTCCCCTGACCGTGAGAACATTATTATGAATAAATATCTGAAATATTTCAGC > 2:22617/1‑150 TCACCAGGCGCGCTGAAATAAGAAAAAGGTAATTCCGCCATCGCGGAGTTACCTGTCCCCTTACCGTGAGAACATTATTATGAATAAATATCTGAAATATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCAT > 1:1331329/1‑150 TCACCAGGCGCGCTGAAATAAGAAAAAGGTAATTCCGCCATCGCGGAGTTACCTGTCCCCTTACCGTGAGAACATTATTATGAATAAATATCTGAAATATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCAT > 1:1338148/1‑150 GGTAATTCCGCCATCGCGGAGTTACCTGTCCCCTTACCGTGAGAACATTATTATGAATAAATATCTGAAATATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCATATTAATATTATCTTGTTCAATGTTGAG > 1:1477098/1‑150 TATGAATAAATATCTGAAATATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCATATTAATATTAGCTTGTTCAATGTTGAGCTGGGCGACAGAGACAAAAAAAGCGTCCAGCAAAGTTAGTTGTAATATTCT < 2:1331329/150‑1 TATGAATAAATATCTGAAATATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCATATTAATATTAGCTTGTTCAATGTTGAGCTGGGCGACAGAGACAAAAAAAGCGTCCAGCAAAGTTAGTTGTAATATTCT < 2:1338148/150‑1 agTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCATATTAATATTAGCTTGTTCAATGTTGAGCTGGGCGACAGAGACAAAAAAAGCGTCCAGCAAAGTTAGTTGTAATATTCGTGCCGCGGCATTACGACCTA > 2:1412589/3‑150 TTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCATATTAATATTAGCTTGTTCAATGTTGAGCTGGGCGACAGAGACAAAAAAAGCGTCCAGCAAAGTTAGTTGTAATATTCTTGCCGAGGCATTACGACCTAA > 2:1416358/1‑150 TTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCATATTAATATTAGCTTGTTCAATGTTGAGCTGGGCGACAGAGACAAAAAAAGCGTCCAGCAAAGTTAGTTGTAATATTCTTGCCTAGGCATTACGACCTAAT > 2:1762416/1‑150 TTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCATATTAATATTAGCTTGTTCAATGTTGAGCTGGGCGACAGAGACAAAAAAAGCGTCCAGCAAAGTTAGTTGTAATATTCTTGCCGAGGCATTACGACCTAAT > 2:959544/1‑150 TGAACAAGCTAATATTAATATGCAAAAAACCGGCGCAATTGTTGATTTCTTCTCACCAGGCGCGCTGAAATAAGAAAAAGGTAATTCCGCCATCGCGGAGTTACCTGTCCCCTTACCGTGAGAACATTATTATGAATAAATATCTGAAATATTTCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4312173‑4312015‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tatttcagcgCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCATATTAATATTAGCTTGTTCAATGTTGAGCTGGGCGACAGAGACAAAAAAAGCGTCCAGCAAAGTTAGTTGTAATATTCTTGCCGAGGCATTACGACCTAAT > NC_000913/4312112‑4312254 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |