| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 2,171,814 | A→G | 5.1% | intergenic (‑87/+19) | gatR ← / ← gatD | pseudogene, repressor for gat operon; interrupted by IS3; split galactitol utilization operon repressor, fragment 2; split galactitol utilization operon repressor, interrupted/galactitol‑1‑phosphate dehydrogenase, Zn‑dependent and NAD(P)‑binding |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,171,814 | 0 | A | G | 5.1% | 346.9 / 6.9 | 118 | intergenic (‑87/+19) | gatR/gatD | pseudogene, repressor for gat operon; interrupted by IS3; split galactitol utilization operon repressor, fragment 2; split galactitol utilization operon repressor, interrupted/galactitol‑1‑phosphate dehydrogenase, Zn‑dependent and NAD(P)‑binding |
| Reads supporting (aligned to +/- strand): ref base A (66/45); new base G (3/3); total (69/49) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.88e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.09e-01 | |||||||||||
Only 100 of 120 total aligned reads displayed.
AGCACGGTTCCCTGTTCATTCACTAATTGGATGATCTTATTCCTTCGCTCGAATGAATTCATCGTCATTTACCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGTGAATGATCTGTTTTGCACAATACCGGGCCAGC‑ATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAA‑CACTTTGCCCGGCATAGCATTACGAGCGATGTCACGCACCGCCTGGGCGAAGCTTTCAAAGCTTCCACGGTGAGCGATTAATGGCTCCAGGCTTAACTTACGTTCTGTCAGCAACC > NC_000913/2171666‑2171963 | aGCACGGTTCCCTGTTCATTCACTAATTGGATGATCTTATTCCTTCGCTCGAATGAATTCATCGTCATTTACCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGTGAATGATCAGTTTTGCACAATACCGGGCCAGC‑At > 2:1255886/1‑150 (MQ=255) cACGGTTCCCTGTTCATTCACTAATTGGATGATCTTATTCCTTCGCTCGAATGAATTCATCGTCATTTACCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGTGAATGATCTGTTTTGCACAATACCGGGCCAGC‑ATcc > 2:1882400/1‑149 (MQ=255) gTTCCCTGTTCATTCACTAATTGGATGATCTTATTCCTTCGCTCGAATGAATTCATCGTCATTTACCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGTGAATGATCTGTTTAGCACAATACCGGGCCAGC‑ATCACGCt > 2:1411628/1‑150 (MQ=255) cTGTTCATTCACTAATTGGATGATCTTATTCCTTCGCTCGAATGAATTCATCGTCATTTACCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGTGAATGATCTGTTTTGCACAATACCGGGCCAGC‑ATCACGCTGGccc > 1:891436/1‑150 (MQ=255) cTGTTCATTCACTAATTGGATGATCTTATTCCTTCGCTCGAATGAATTCATCGTCATTTACCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGTGAAAGATCTGTTTTGCACAAAACAGGGCCAGC‑ATCACGCTGGccc > 2:1407947/1‑150 (MQ=255) tGTTCATTCACTAATTGGATGATCTTATTCCTTCGCTCGAATGAATTCATCGTCATTTACCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGTGAATGATCTGTTTTGCACAATACCGGGCCAGC‑GTGATGCTGGCCcg < 2:1066086/150‑1 (MQ=255) tttcattcaCTAATTGGATGAGCTTATTCCTTCGCTCGAATGAAGTCATCGTCATTTACGCATTTTCAATATTGGCTAGTGTATACGAAGGGGGACCATTGGTGAATGAGCTGTTTTGCACAATACCGGGCCAGC‑GTGATGCTGGCCcgg < 1:93882/149‑2 (MQ=255) gTTCATTCACTAATTGGATGATCTTATTCCTTCGCTCGAATGAATTCATCGTCATTTACCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGTGAATGATCTGTTTTGCACAATACCGGGCCAGC‑GTGATGCTGGCCcgg < 2:78604/150‑2 (MQ=255) tgcattcaCTAATTGGATGATCTTATTCCTTCTCTCGAATGAATTCATCGTCATTTTCCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGTGAATGATCTGTTTTGCACAATACCGGGCCAGC‑ATCACGCTGGCCcgcg < 2:1148216/148‑1 (MQ=255) ttcaCTAATTGGATGATCTTATTCCTTCGCTCGAATGAATTCATCGTCATTTACCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGTGAATGATCTGTTTTGCACAATACCGGGCCAGC‑ATCACGCTGGCCCGCGGttt > 1:389810/1‑150 (MQ=255) ttcaCTAATTGGATGATCTTATTCCTTCGCTCGAATGAATTCATCGTCATTTACCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGTGAATGATCTGTTTTGCACAATACCGGGCCAGC‑ATCACGCTGGCCCGCGGttt < 1:691559/150‑1 (MQ=255) aCTAATTGGATGATCTTATTCCTTCGCTCGAATGAATTCATCGTCATTTACCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGTGAATGATCTGTTTTGCACAATACCGGGCCAGC‑ATCACGCTGGCCCGCGGTTTCAg > 2:1010318/1‑150 (MQ=255) cTAATTGGATGATCTTATTCCTTCGCTCGAATGAATTCATCGTCATTTACCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGTGAATGATCTGTTTTGCACAATACCGGGCCAGC‑ATCACGCTGGCCCGCGGTTTCAgg < 1:241749/150‑1 (MQ=255) tAATTGGATGATCTTATTCCTTCGCTCGAATGAATTCATCGTCATTTACCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGTGAATGATCTGTTTTGCACAATACCGGGCCAGC‑ATCACGCTGGCCCGCGGTTTCAggg < 2:579948/150‑1 (MQ=255) tAATTGGATGATCTTATTCCTTCGCTCGAATGAATTCATCGTCATTTACCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGTGAATGATCTGTTTTGCACAATACCGGGCCAGC‑ATCACGCTGGCCCGCGGTTTCAggg < 1:1075275/150‑1 (MQ=255) tGGATGATCTTATTCCTTCGCTCGAATGAATTCATCGTCATTTACCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGTGAATGATCTGTTTTGCACAATACCGGGCCAGC‑ATCACGCTGGCCCGCGGTTTCAGGGAATg < 2:1529425/150‑1 (MQ=255) tGGATGATCTTATTCCTTCGCTCGAATGAATTCATCGTCATTTACCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGTGAATGATCTGTTTTGCACAATACCGGGCCAGC‑ATCACGCTGGCCCGCGGTTTCAGGGAATg > 1:222138/1‑150 (MQ=255) gatgctCTTATTCCTTCGCTCGAATGAATTCATCGTCATTTACCCATATTCAATTGTGGCTAGTGTACACGAAGGGGGACAATTGGTGAATGATCTGTTTTGCACAATACCGGGCCAGC‑ATCACGCTGGCCCGCGGTTTCAGGGAATgcc > 2:981963/1‑148 (MQ=255) atgatCTTATTCCTTCGCTCGAATGAATTCATCGTCATTTACCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGTGAATGATCTGTTTTGCACAATACCGGGCCAGC‑ATCACGCTGGCCCGCGGTTTCAGGGAATGAGc > 2:598248/1‑150 (MQ=255) atgatCTAATTCCTTCGCTCGAATCAATTCATCGTCATTTACCCATATTCAATTGTGGCTCGTGTAAACGAAGGGGGACCATTGGGGAATGATCTGTTTTGCACAATACCGGGCCAGC‑ATCACGCTGGCCCGCGGTTTCAGGGAATGAGc < 1:933318/150‑1 (MQ=255) tgatCTTATTCCTTCGCTCGAATGAATTCATCGTCATTTACCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGTGAATGATCTGTTTTGCACAATACCGGGCCAGC‑ATCACGCTGGCCCGCGGTTTCAGGGAATGAGCa > 2:996719/1‑150 (MQ=255) ttATTCCTTCGCTCGAATGAATTCATCGTCATTTACCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGTGAATGATCTGTTTTGCACAATACCGGGCCAGC‑ATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAA‑CACt < 2:205240/150‑1 (MQ=255) tATTCCTTCGCTCGAATGAATTCATCGTCATTTACCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGTGAATGATCTGTTTTGCACAATACCGGGCCAGC‑ATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAA‑CACtt > 1:882539/1‑150 (MQ=255) aTTCCTTCGCTCGAATGAATTCATCGTCATTTACCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGTGAATGATCTGTTTTGCACAATACCGGGCCAGC‑ATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAA‑CACttt > 2:1092844/1‑150 (MQ=255) tCCTTCGCTCGAATGAATTCATCGTCATTTACCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGTGAATGATCTGTTTTGCACAATACCGGGCCAGC‑ATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAA‑CACTTTGc > 2:107152/1‑150 (MQ=255) tCGAATGAATTCATCGTCATTTACCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGTGAATGATCTGTTTTGCACAATACCGGGCCAGC‑ATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAA‑CACTTTGCCCGGCATa > 1:514219/1‑150 (MQ=255) ggaaggaatTCATCGTCTTTTACCAATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGTGAATTATCTGTTTTGCACAATACCGGGCCAGC‑ATCACGCTTGCCCGCGGTTTCAGGGAATGAGCAA‑CACTTTGCCCGGCATAg < 2:443756/149‑1 (MQ=255) cGAATGAATTCATCGTCATTTACCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGTGAATGATCTGTTTTGCACAATACCGGGCCAGC‑ATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAA‑CACTTTGCCCGGCATAg > 1:1356051/1‑150 (MQ=255) cGAATGAATTCATCGTCATTTACCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGTGAATGATCTGTTTTGCACAATACCGGGCCAGC‑ATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAA‑CACTTTGCCCGGCATAg > 2:42682/1‑150 (MQ=255) caatgaatTCATCGTCATTAACCCATATTCATTTGTGGCTAGTGTAAACGACGGGGCACCATTGGTTAATGATCTGTTTTGCACAATACCGGGCCAGC‑ATCACGCGGGCCCGCGGTTTCAGGGAATGAGCAA‑CACTTTGCCCGGCATAGc < 1:624073/149‑1 (MQ=255) aatgaatTCATCGTCATTTACCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGTGAATGATCTGTTTTGCACAATACCGGGCCCGC‑ATCACCCTGGCGCGCGGTTTCAGGGAAAGCGCAACCAATTTG‑CCGGCATAgac > 1:1708384/1‑148 (MQ=255) aatgaatTCATCGTCATTTACCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGTGAATGATCTGTTTTGCACAATACCGGGCCAGC‑ATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAA‑CACTTTGCCCGGCATAGCa > 2:1545521/1‑150 (MQ=255) aatgaatTCATCGTCATTTACCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGTGAATGATCTGTTTTGAACAAAACCGGGCCAGA‑AACACGCTTGCCCGCGGTTTCATGGAATGAGCAA‑CACTTTGCCCGGCATAgaa > 1:1702047/1‑148 (MQ=255) atgaatTCATCGTCATTTACCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGTGAATGATCTGTTTTGCACAATACCGGGCCAGC‑ATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAA‑CACTTTGCCCGGCATAGCAt < 2:56206/150‑1 (MQ=255) atTCATCGTCATTTACCCATCTTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGTGAATGATCTGTTTTGCACAATACCGGGCCAGC‑ATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAA‑CACTTTGCCCGGCATAGCATTACg < 2:1112651/150‑1 (MQ=255) tCATCGTCATTTACCAATATTCATTTGTGGCTTGTGTAAACGAAGGGGGACCATTGGTGAATGATCTGTTTTGCACAATACCGGGCCAGC‑ATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAA‑CACTTTGCCCGGCATAGCATTACGAg < 2:621354/150‑1 (MQ=255) aTCGTCATTTACCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGTGAATGATCTGTTTTGCACAATACCGGGCCAGC‑AGCACGCTGGCCCGCGGTTTCAGGGAATGAGCAA‑CACTTTGCCCGGCATAGCATTACGAGCg < 1:497510/150‑1 (MQ=255) cGTCATTTACCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGTGAATGATCTGTTTTGCACAATACCGGGCCAGC‑ATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAA‑AACTTTGCACGGCATAGCATTACGAGCGAt > 1:788823/1‑150 (MQ=255) gTCATTTACCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGTGAATGATCTGTTTTGCACAATACCGGGCCAGC‑ATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAA‑CACTTTGCCCGGCATAGCATTACGAGCGATg > 2:154556/1‑150 (MQ=255) cATTTACCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGTGAATGATCTGTTTTGCACAATACCGGGCCAGC‑ATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAA‑CACTTTGCCCGGCATAGCATTACGAGCGATGTc > 2:1061940/1‑150 (MQ=255) cATTTACCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGTGAATGATCTGTTTTGCACAATACCGGGCCAGC‑ATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAA‑CACTTTGCCCGGCATAGCATTACGAGCGAAGTc > 2:470369/1‑150 (MQ=255) tttACCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGTGAATGATCTGTTTTGCACAATACCGGGCCAGC‑ATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAA‑CACTTTGCCCGGCATAGCATTACGAGCGATGTCAc < 1:1337417/150‑1 (MQ=255) cccATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGTGAATGATCTGTTTTGCACAATACCGGGCCAGC‑ATCACGCTGGCCCGCGGTGTAAGGGAATGAGCAA‑CCCTTTGCCCGGCATAGCATTACGAGCGATGgcacgcac > 2:1414377/1‑150 (MQ=255) ccATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGTGAATGATCTGTTTTGCACAATACCGGGCCAGC‑ATCACGCTGGCACGCGGTTTCAGGGTATGAGCAA‑CACTTTGCCCGGCATCGCATTACGAGCGATGTCACGCAcc > 1:298381/1‑150 (MQ=255) cATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGTGAATGATCTGTTTTGCACAATACCGGGCCAGC‑ATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAA‑CACTTTGCCCGGCATAGCATTACGAGCGATGTCACGCACCg > 2:1682751/1‑150 (MQ=255) ttttCAATTTTGGGTAGTGTAAACGAAGGGGTACCATTGGTGAATGATCTGTTTTGCACAATACCGGCCCAGC‑ATCACGCGGGCCCGCGGTTTCAGGGAATGAGCAA‑CACTTTGCCCGGCATAGCATTACGAGCGATGTCACGCACCGcc < 1:1532688/148‑1 (MQ=255) tatTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGTGAATGATCTGTTTTGCACAATACCGGGCCAGC‑ATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAA‑CACTTTGCCCGGCATAGCATTACGAGCGATGTCACGCACCGcc < 1:227275/150‑1 (MQ=255) ttCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTTGTGAATGATCTGTTTTGCAAAATACCGGGCCAGC‑ATCACTCTGGCCCGCGGTTTCAGGTAATGAGCAA‑CACTTTGCCCGGCATAGCATTACGAGCGATGTCACGCACCGCCTg < 2:1260483/150‑1 (MQ=255) tCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGTGAATGATCTGTTTTGCACAATACCGGGCCAGC‑ATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAA‑CACTTTGCCCGGCATAGCATTACGAGCGATGTCCCGCACCGCCTgg > 2:582666/1‑150 (MQ=255) cAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGTGAATGATCTGTTTTGCACAATACCGGGCCAGC‑ATCACGCTGGCCCGCGGTTTCAGGGAATGCGCAA‑CACTTTGCCCGGCCTAGCATTACGCGCGATGTCACGCACCGCCTggg > 2:324037/1‑150 (MQ=255) cAATTGTGGCAAGGGTAAACGAAGGGGGCCCATGGGGGAATGATCGGTTTTGCACAATACCGGGCCAGC‑ATCACGCGGGCCCGCGGTTTCAGGGAATGAGCAA‑CACTTTGCCCGGCATAGCATTACGAGCGATGTCACGCACCGCCTggg < 1:340065/150‑1 (MQ=255) aaTTGTGGCTAGTGTAAACGAAGGGGGACCATTGGTGAATGATCTGTTTTGCACAATACCGGGCCAGC‑ATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAA‑CACTTTGCCCGGCATAGCATTACGAGCGATGTCACGCACCGCCTGGGc > 1:1767746/1‑150 (MQ=255) tgaggCTAGTGTAAACGAAGGGGGACCATTGCTGAATGAACTGATTTTCTCAATACCGGGCAAGC‑ATACCGCTGGCCCGCGGTTTCAGGGAATGAGCAA‑CACTATCCCCGCCAAACCAATACGAGCGATGTCACGCCCCGCCTGGGCGaa > 1:907292/4‑150 (MQ=255) gtgGCTAGTGTAAACGAAGGGGGACCATTGGTGAATGATCTGTTTTGCACAATACCGGGCCAGC‑ATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAA‑CACTTTGCCCGGCATAGCATTACGAGCGATGTCACGCACCGCCTGGGCGAAg > 1:950300/1‑150 (MQ=255) ggCTAGTGTAAACGAAGGGGGACCATTGGTGAATGATCTGTTTTGCACAATACCGGGCCCGC‑ATCACGCTGGCCCGCGGTTTCAGGGAATGCGCAA‑CACTTTGCCCGGCATAGCATTACGAGCGATGTCACGCACCGCCTGGGCGCAGCt > 2:1368896/1‑150 (MQ=255) ggCTAGTGTAAACGAAGGGGGACCATTGGTGAATGATCTGTTTTGCACAATACCGGGCCAGC‑ATCCCGCTGGCCCGCGGTTTCAGGGAATGAGCAA‑CACTTTGCCCGGCATAGCATTACGAGCGATGTCACGCCCCGCCTGCGCGCAGCt > 2:307713/1‑150 (MQ=255) attgtAAACGAAGGGGGACCATTGGTGAATGATCTGTTTTGCACAATACCGGGCCAGC‑ATCACGCTGGCCCGCGGATTCAGGGAATGAGCAA‑CACTTTGCCCGGCATAGCATTACGAGCGATGTCACGCACCGCCTGGGCGAAGCTTTCa < 1:1027475/148‑1 (MQ=255) aGTGTAAACGAAGGGGGACCATTGGTGAATGATCTGTTTTGCACAATACCGGGCCAGC‑ATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAA‑CACTTTGCCCGGCATAGCATTACGAGCGATGTCACGCACCGCCTGGGCGAAGCTTTCa < 1:107152/150‑1 (MQ=255) gtgtAAACGAAGGGGGACCATTGGTGAATGATCTGTTTTGCACAATACCGGGCCAGC‑ATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAA‑CACTTTGCCCGGCATAGCATTACGAGCGATGTCACGCACCGCCTGGGCGAAGCATTCaa > 2:1383948/1‑150 (MQ=255) tgtAAACGAAGGGGGACCATTGGTGAATGATCTGTTTTGCACAATACCGGGCCAGC‑ATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAA‑CACTTTGCCCGGCATAGCATTACGAGCGATGTCACGCACCGCCTGGGCGAAGCTTTCaaa > 1:1251547/1‑150 (MQ=255) gtAAACGAAGGGGGACCATTGGTGAATGATCTGTTTTGCACAATACCGGGCCAGC‑ATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAA‑CACTTTGCCCGGCATAGCATTACGAGCGATGTCACGCACCGCCTGGGCGAAGCTTTCAAAg < 2:1369792/150‑1 (MQ=255) tAAACGAAGGGGGACCATTGGTGAATGATCTGTTTTGCACAATACCGGGCCAGC‑ATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAA‑CACTTTGCCCGGCATAGCATTACGAGCGATGTCACGCACCGCCTGGGCGAAGCTTTCAAAGc > 2:648989/1‑150 (MQ=255) aaCGAAGGGGGACCATTGGTGAATGATCTGTTTTGCACAATACCGGGCCAGC‑ATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAA‑CACTTTGCCCGGCATAGCATTACGAGCGATGTCACGCACCGCCTGGGCGAAGCTTTCAAAGCtt > 1:217840/1‑150 (MQ=255) aaGGGGGACCATTGGTGAATGATCTGTTTTGCACAATACCGGGCCAGC‑ATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAA‑CACTTTGCCCGGCATAGCATTACGAGCGATGTCACGCACCGCCTGGGCGAAGCTTTCAAAGCTTCCAc > 2:779882/1‑150 (MQ=255) ggggACCATTGGTGAATGATCTGTTTTGCACAATACCGGGCCAGC‑ATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAA‑CACTTTGCCCGGCATAGCATTACGAGCGATGTCACGCACCGCCTGGGCGAAGCTTTCAAAGCTTCCACGGt < 2:172738/150‑1 (MQ=255) cccATTGGTGAATGATCTGTTTTGCACAATACCGGGCCAGC‑ATCACGCGGGCCCGCGGTTTCAGGGAATGAGCAA‑CACTTTGCCCGGCATAGCATTACGAGCGATGTCACGCACCGCCTGGGCGAAGCTTTCAAAGCTTCCACGGTGAGc < 2:419581/149‑1 (MQ=255) aCCATTGGTGAATGATCTGTTTTGCACAATACCGGGCCAGC‑ATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAA‑CACTTTGCCCGGCATAGCATTACGAGCGATGTCACGCACCGCCTGGGCGAAGCTTTCAAAGCTTCCACGGTGAGc < 2:1009040/150‑1 (MQ=255) ccATTGGTGAATGATCTGTTTTGCACAATACCGGGCCAGC‑ATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAA‑CACTTTGCCCGGCATAGCATTACGAGCGATGTCACGCACCGCCTGGGCGAAGCTTTCAAAGCTTCCACGGTGAGCg > 1:1360402/1‑150 (MQ=255) cATTGGTGAATGATCTGTTTTGCACAATACCGGGCCAGC‑ATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAA‑CACTTTGCCCGGCATAGCATTACGAGCGATGTCACGCACCGCCTGGGCGAAGCTTTCAAAGCTTCCACGGTGAGCGa > 2:1218494/1‑150 (MQ=255) ttGGTGAATGATCTGTTTTGCACAATACCGGGCCAGC‑ATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAA‑CACTTTGCCCGGCATAGCATTACGAGCGATGTCACGCACCGCCTGGGCGAAGCTTTCAAAGCTTCCACGGTGAGCGAtt < 1:154556/150‑1 (MQ=255) tGAATGTTGGGTTTTGCAAAATA‑CGGGTCATCTATCTGGGTGGCCCTCTGTTTCAGGGAATGAGCAA‑CACTTTGCCCGGCATAGCATTAAGATCGATGTTACGCACCGCCTGGGCGAAGCTTTCAAAGCTTCCACGGTGAGCGATTAATg < 2:1209118/150‑1 (MQ=255) gAATGATCTGTTTTGCACAATACCGGGCCAGC‑ATGACGCAGGCCCGCGGTTTCAGGGAATGACCAA‑CACTTTGCCCGGCATAGCATTACCAGCGATGTCACGCACCGCCTTGGCGAACCTTTCTAACCTGCCACGGTGAGCGATTAATgg > 2:471320/1‑150 (MQ=255) aaTGATCTGTTTTGCACAATACCGGGCCAGC‑ATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAA‑CACTTATCCCGGCATAGCATTACGAGCGATGACACGAACCGCCTGGGCGAAGCTTTCAAAGCTTCCACGGTGAGCGATTAATGGc > 2:1774222/1‑150 (MQ=255) aTGATCTGTTTTGCACAATACCGGGCCAGC‑ATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAA‑CACTTTGCCCGGCATAGCATTACGAGCGATGTCACGCACCGCCTGGGCGAAGCTTTCAAAGCTTCCACGGTGAGCGATTAATGGCt > 1:424501/1‑150 (MQ=255) tGATCTGTTTTGCACAATACCGGGCCAGC‑ATCCCGCTGGCCCGCGGTTTCAGGGAATGAGCAG‑CACTTTGCCCGGCATAGCATTACGAGCGATGTCACGCACCGCCTGGGCGAAGCTTTCAAAGCTTCCACGGTGAGCGATTAATGGCTc > 2:1176598/1‑150 (MQ=255) tGATCTGTTTTGCACAATACCGGGCCAGC‑ATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAA‑CACTTTGCCCGGCATAGCATTACGAGCGATGTCACGCACCGCCTGGGCGAAGCTTTCAAAGCTTCCACGGTGAGCGATTAATGGCTc > 2:957401/1‑150 (MQ=255) gATCTGTTTTGCACAACACCGGGCCAGC‑ATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAA‑CACTTTGCCCGGCATAGCATTACGAGCGATGTCACGCACCGCCTGGGCGAAGCTTTCAAAGCTTCCACGGTGAGCGATTAATGGCTcc > 1:914298/1‑150 (MQ=255) aTCTGTTTTGCACAATACCGGGCCAGC‑ATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAA‑CACTTTGCCCGGCATAGCATTACGAGCGATGTCACGCACCGCCTGGGCGAAGCTTTCAAAGCTTCCACGGTGAGCGATTAATGGCTCCa > 2:127595/1‑150 (MQ=255) aTCTGTTTTGCACAATACCGGGCCAGC‑ATCACGCTGGCCCGCGGGTTGAGGGAATTGGCAA‑CACGTTGACCGGAATAGGTTTTAGCGCGATGTAACGCACCGCCTGGGCGCAGGTTTCAAAGCTTGCCCGGTGAGGGGTTAAgggggccc > 2:1725080/1‑145 (MQ=255) tCTGTTTTGCACAATACCGGGCCAGC‑ATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAA‑CACTTTGCCCGGCATAGCATTACGAGCGATGTCACGCACCGCCTGGGCGAAGCTTTCAAAGCTTCCACGGTGAGCGATTAATGGCTCCAg < 2:950300/150‑1 (MQ=255) gTTTTGCACAATACCGGGCCAGC‑ATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAA‑CACTTTGCCCGGCATAGCATTACGAGCGATGTCACGCACCGCCTGGGCGAAGCTTTCAAAGCTTCCACGGTGAGCGATTAATGGCTCCAGGCt > 1:529618/1‑150 (MQ=255) ttttGCACAATACCGGGCCAGC‑ATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAA‑CACTTTGCCCGGCATAGCATTACGAGCGATGTCACGCACCGCCTGGGCGAAGCTTTCAAAGCTTCCACGGTGAGCGATTAATGGCTCCAGGCtt < 1:803599/150‑1 (MQ=255) tttGCACAATACCGGGCCAGC‑ATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAA‑CACTTTGCCCGGCATAGCGTTACGAGCGATGTCACGCACCGCCTGGGCGAAGCTTTCAAAGCTTCCACGGTGAGCGATTAATGGCTCCAGGCTTa > 1:1449806/1‑150 (MQ=255) gCACAATACCGGGCCAGC‑ATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAA‑CACTTTGCCCGTCATAGCATTACGAGCGATGTCACGCACCGCCTGGGCGAAGCTTTCAAAGCTTCCACGGTGAGCGATTAATGGCTCCAGGCTTAACt < 1:763856/150‑1 (MQ=255) gCACAATACCGGGCCAGC‑ATCACGCTGGCCCGCGGGTTCAGGGAATGAGCAA‑CACTTTGCCCGGCATAGCATTTCGAGCGATGTCCCGCACCGCCTGGGCGAAGCTTTCAAAGCTTCCACGGTGAGCGATGATTGGCTCCAGGCTTAACt > 2:689865/1‑150 (MQ=255) caATACCGGGCCAGC‑ATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAA‑CACTTTGCCCGGCATAGCATTACGAGCGATGTCACGCACCGCCTGGGCGAAGCTTTCAAAGCTTCCACGGTGAGCGATTAATGGCTCCAGGCTTAACTTAc > 1:1316395/1‑150 (MQ=255) caATACCGGGCCAGC‑ATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAA‑CACTTTGCCCGGCATAGCATTACGAGCGATGTCACGCACCGCCTGGGCGAAGCTTTCAAAGCTTCCACGGTGAGCGATTAATGGCTCCAGGCTTAACGTAc > 1:139103/1‑150 (MQ=255) aaTCCCGGGCCAGC‑ATCCCGCTGGCCCGCGGTTTCAGGGAATGAGCAA‑CACTTTGCCCGGCATAGCATTACGAGCGATGTCACGCACCGCCTGGGCGAAGCTTTCAAAGCTTCCACGGTGAGCGATTAATGGCTCCAGGCTTAACTTACg < 1:1413017/150‑1 (MQ=255) aTACCGGGCCAGC‑ATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAA‑CACTTTGCCCGGCATAGCATTACGAGCGATGTCACGCACCGCCTGGGCGCAGCTTTCAAAGCTTCCACGGTGAGCGATTAATGGCTCCAGGCTTAACTTACGt > 2:269356/1‑150 (MQ=255) ccgcGGGCCAGC‑GTGATGCTGGCCCGCGGTTTCAGGGAATGAGCAA‑CACTTTGCCCGGCATAGCATTACGAGCGCTGTCCCGCACCGCCTGGGCGAAGCTTTCAAAGCTTCCACGGTGAGCGCTTAATGGCTCCAGGCTTAACTTACGtt > 1:1128408/4‑150 (MQ=255) gcGGGCCAGC‑GTGATGCTGGCCCGCGGTTTCAGGGAATGAGCAA‑CACTTTGCCCGGCATAGCATTACGAGCGATGTCACGCACCGCCTGGGCGAAGCGTTCAAAGCTTCCACGGTGAGCGATTAATGGCTCCAGGCTTAACTTACGTTCt > 1:339654/2‑150 (MQ=255) ccGGGCCAGC‑ATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAA‑CACTTTGCCCGGCATAGCATTACGAGCGATGTCACGCACCGCCTGGGCGAAGCTTTCAAAGCTTCCACGGTGAGCGATTAATGGCTCCAGGCTTAACTTACGTTCt > 1:1717208/1‑150 (MQ=255) cGGGCCAGC‑ATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAA‑CACTTTGCCCGGCATAGCATTACGAGCGATGTCACGCACCGCCTGGGCGAAGCTGTCAAAGCTTCCACGGTGAGCGATTAATGGCTCCAGGCTTAACTTACGTTCTg < 2:976384/150‑1 (MQ=255) gCCAGC‑ATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAA‑CACTTTGCCCGGCATAGCATTACGAGCGATGTCACGCACCGCCTGGGCGAAGCTTTCAAAGATTCCACGGTGAGCGATTAATGGCTCCAGGCTTACCTTACGTTCTGTCa > 2:251440/1‑150 (MQ=255) ccccgc‑agcaCGCGGGCCCGCGGTTTCAGGGAATGAGCAA‑CACTTTGCCCGGCATAGCATTACGAGCGATGTCACGCACCGCCTGGGCGAAGCTTTCAAAGCTTCCACGGTGAGCGATTAATGGCGCCAGGCTTAACTTACGTTCTGTCa < 2:1171162/146‑1 (MQ=255) ccAGC‑ATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAA‑CACTTTGCCCGGCATAGCATTACGAGCGATGTCACGCACCGCCTGGGCGAAGCTTTCAAAGCTTCCACGGTGAGCGATTAATGGCTCCAGGCTTAACTTACGTTCTGTCAg < 2:650333/150‑1 (MQ=255) ccAGC‑ATCACGCTGGCCCGCGGGTTCAGGGAATGAGCAA‑CACTTTGCCCGGCATAGCATTACGAGCGATGTCACGCACCGCCTGGGCGAAGCTTTCAAAGCTTCCACGGTGAGCGATTAATGGCTCCAGGCTTAACTTACGTTCTGTCAg < 1:1692033/150‑1 (MQ=255) cAGC‑ATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAA‑CACTTTGCCCGGCATAGCATTACGAGCGATGTCACGCACCGCCTGGGCGAAGCTTTCAAAGCTTCCACGGTTAGCGATTAATGGCTCCAGGCTTAACTTACGTTCTGTCAGc < 2:320232/150‑1 (MQ=255) c‑ATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAA‑CACTTTGCCCGGCATAGCATTACGAGCGATGTCACGCACCGCCTGGGCGAAGCTTTCACAGCATCCACGGTGAGCGATTAATGGCTCCAGGCTTAACTTACGGTCTGTCAGCAAc > 1:1679695/1‑150 (MQ=255) aTCACGCTGGCCCGCGGTTTCAGGGAATGAGCAA‑CACTTTGCCCGGCATAGCATTACGAGCGATGTCACGCACCGCCTGGGCGAAGCTTTCAAAGCTTCCACGGTGAGCGATTAATGGCTCCAGGCTTAACTTACGTTCTGTCAGCAAcc < 1:1010318/150‑1 (MQ=255) | AGCACGGTTCCCTGTTCATTCACTAATTGGATGATCTTATTCCTTCGCTCGAATGAATTCATCGTCATTTACCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGTGAATGATCTGTTTTGCACAATACCGGGCCAGC‑ATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAA‑CACTTTGCCCGGCATAGCATTACGAGCGATGTCACGCACCGCCTGGGCGAAGCTTTCAAAGCTTCCACGGTGAGCGATTAATGGCTCCAGGCTTAACTTACGTTCTGTCAGCAACC > NC_000913/2171666‑2171963 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |