| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 2,884,579 | T→G | 5.5% | R881R (AGA→CGA) ‡ | ygcB ← | Cascade complex anti‑viral R‑loop helicase‑annealase Cas3 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,884,579 | 0 | T | G | 5.5% | 417.7 / 10.8 | 137 | R881R (AGA→CGA) ‡ | ygcB | Cascade complex anti‑viral R‑loop helicase‑annealase Cas3 |
| Reads supporting (aligned to +/- strand): ref base T (52/77); new base G (2/6); total (54/83) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.79e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.49e-01 | |||||||||||
Only 100 of 140 total aligned reads displayed.
TGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGA > NC_000913/2884430‑2884728 | tgtgAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTAATTTGGGATTTGCAGGGATTActct > 2:905494/1‑150 (MQ=255) gtgAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTACCGAAGTTATTTGGGATTTGCAGGGATGACTCTg > 1:937214/1‑150 (MQ=255) ataAAATCTCATACCGGGAAATTAAAAGAAGATGTACCTTGTGCACCTTCCCTACTTAAGTCGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATc < 2:222608/150‑1 (MQ=255) ataAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATc < 1:715611/150‑1 (MQ=255) taAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATcc < 1:1763848/150‑1 (MQ=255) aaTCTCATACCGTGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAATCCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACCAGAGTCATCCCtg < 1:1483062/150‑2 (MQ=255) aaTCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACCAGAGTCATCCCtg < 1:1796441/150‑2 (MQ=255) aaTCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACCAGAGTCATCCCtg < 1:1770755/150‑2 (MQ=255) aaTCTCATACCGGGAAATTAAAAGAACATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCtt < 1:1337740/150‑1 (MQ=255) aTCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAAGGATGACCAGAGTCATCCCtgc < 1:813856/150‑3 (MQ=255) tctcATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAATTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACCAGAGTCATCCCTGC‑‑a < 1:891786/150‑1 (MQ=255) ccGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTg > 2:694455/1‑150 (MQ=255) ccGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTg > 1:571121/1‑150 (MQ=255) cGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATT‑GTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGta < 1:934217/150‑1 (MQ=255) gggAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGta < 2:1062970/150‑1 (MQ=255) gggAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTAGCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGta < 1:113821/150‑1 (MQ=255) gAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGtata < 1:1046646/150‑1 (MQ=255) aaTTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAgg < 2:1252493/150‑1 (MQ=255) aTTAAAAGAATATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGt < 1:333716/150‑1 (MQ=255) aTTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGt < 2:1242596/150‑1 (MQ=255) aTTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGt < 2:491962/150‑1 (MQ=255) aaaGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGtaata > 2:1096789/1‑150 (MQ=255) agaagaTGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAAc < 1:1106825/150‑1 (MQ=255) agaagaTGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAAc < 1:498174/150‑1 (MQ=255) gaagaTGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACa > 1:1735770/1‑150 (MQ=255) aagaTGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACaa < 2:1359401/150‑1 (MQ=255) aagaTGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACaa > 2:1570613/1‑150 (MQ=255) agaTGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAAt < 2:289957/150‑1 (MQ=255) agaTGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAACCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAAt < 2:392065/150‑1 (MQ=255) aTGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATAc < 2:1607150/150‑1 (MQ=255) aTGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATAc < 1:487262/150‑1 (MQ=255) gTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTg < 1:1902440/150‑1 (MQ=255) tACATTGTGCACCTTCCCTACTTTAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGt < 2:148991/150‑1 (MQ=255) aCATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGtt > 1:236375/1‑150 (MQ=255) cATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGTGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTa < 2:1446635/150‑1 (MQ=255) gtttatCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGcc > 1:1565447/6‑150 (MQ=255) atCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGAc > 2:152562/2‑150 (MQ=255) tCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGAcc < 2:577967/150‑1 (MQ=255) tCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGAcc < 2:1590013/150‑1 (MQ=255) tCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGAcc < 1:987896/150‑1 (MQ=255) tCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGAcc < 2:760697/150‑1 (MQ=255) ccTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACcca > 2:1901165/1‑150 (MQ=255) ccTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCACGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACcca < 1:212391/150‑1 (MQ=255) tACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACccatc < 1:1657799/150‑1 (MQ=255) tACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACccatc > 2:1060497/1‑150 (MQ=255) tACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACccatc < 2:164953/150‑1 (MQ=255) tACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACccatc > 1:487731/1‑150 (MQ=255) tACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACccatc > 2:1637596/1‑150 (MQ=255) aGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCAtccatcca < 1:85118/150‑1 (MQ=255) aGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCAtccatcca > 2:1821336/1‑150 (MQ=255) gTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCTGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAg < 1:1313131/150‑1 (MQ=255) gggATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGAtt > 1:1029032/1‑150 (MQ=255) aTAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGTCCCATCCATCCAGATTCTg < 1:63669/150‑1 (MQ=255) aaaCCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGtt < 2:1697929/150‑1 (MQ=255) aaCCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGTTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGttt > 2:1304247/1‑150 (MQ=255) aCCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTc < 2:1539779/150‑1 (MQ=255) aCCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTc < 2:1113461/150‑1 (MQ=255) ccGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCTAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTcc < 1:1373427/150‑1 (MQ=255) tATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTc > 2:193669/1‑150 (MQ=255) aTTGGTCTTAATATCGTCCTTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTcc < 2:1875609/150‑1 (MQ=255) ttGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCa > 1:1355253/1‑150 (MQ=255) ttGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCa > 2:1419198/1‑150 (MQ=255) tGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAg > 1:17294/1‑150 (MQ=255) atCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAAc < 1:1146265/150‑1 (MQ=255) cGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCTTCCAGATTCTGTTTCCCTTCCAGCCAAAGTAAccc > 1:599909/1‑150 (MQ=255) gTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCa < 1:1084501/150‑1 (MQ=255) gTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCa > 1:864016/1‑150 (MQ=255) tCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCAt > 2:1432800/1‑150 (MQ=255) aTTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATcg > 2:1160342/1‑149 (MQ=255) ttGATAACAATCATTCCCGAAGTTATTTGTGATTTGCAGGGATGACTCTGGTCATCGCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCtt < 1:135527/150‑1 (MQ=255) tAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATc > 1:1290149/1‑150 (MQ=255) aaaCAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACACTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTACATc > 1:336110/2‑150 (MQ=255) aaCAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATct > 2:34616/1‑150 (MQ=255) aaCAATCATTCCCGAAGGTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATct < 1:1404557/150‑1 (MQ=255) aCAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATcta > 1:204087/1‑150 (MQ=255) aCAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCATTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTAACCCTGCCAGCCCCATGCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCAATCTTCATcta > 2:51727/1‑150 (MQ=255) aTTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTACCCCATCTTCATCTACGACtt > 2:787366/1‑150 (MQ=255) ccGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGa > 2:654661/1‑150 (MQ=255) gAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCAAGCCAAAGTAACCCATCTTCATCTACTACTTCAGaaa > 2:1091525/1‑150 (MQ=255) aGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGaaaaa < 1:1096789/150‑1 (MQ=255) aGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGaaaaa < 1:157858/150‑1 (MQ=255) ttATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCACTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACt > 1:718068/1‑150 (MQ=255) aTTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTAc > 2:165749/1‑150 (MQ=255) aTTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTAc < 2:659175/150‑1 (MQ=255) tttGCAGGGATGACTCTTGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAg < 1:1907764/150‑1 (MQ=255) tGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCAGCCAGATTCTGTGTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGGTTCCAGGt > 2:891696/1‑150 (MQ=255) tGCAGGGATGACTCTGGTCATCCCGTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCGGGt < 1:207703/150‑1 (MQ=255) gaaGGGATGACCAGAGTCATCCCTGCAAATCCCATGTATAGGTATTAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACACATCTTCATCTACTACTTCAGAAATACTACTTTTCCAgg > 1:69322/3‑150 (MQ=255) gCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCCTCTTCATCGACTACTTCAGAAAAACTACGTTTCCAGGTg > 2:1547552/1‑150 (MQ=255) cAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTCCCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGa > 1:1147400/1‑150 (MQ=255) aGGGATGACCAGAGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGaa > 1:1732536/1‑150 (MQ=255) gggATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAg > 1:199658/1‑150 (MQ=255) gggATGACTCTGGTCATCCCGTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAg < 1:905494/150‑1 (MQ=255) ggATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAgg < 2:1200215/150‑1 (MQ=255) gATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAggg < 2:1355253/150‑1 (MQ=255) gATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAggg < 2:461986/150‑1 (MQ=255) tGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTa < 1:165922/150‑1 (MQ=255) gACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTAc < 2:17294/150‑1 (MQ=255) ctctTGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACAt < 1:650562/150‑1 (MQ=255) tGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGa > 2:439226/1‑150 (MQ=255) | TGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGA > NC_000913/2884430‑2884728 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |