| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2822046 = | 125 (0.960) | 10 (0.080) | 6/266 | NT | 7.8% | intergenic (‑35/+93) | alaS/recX | alanyl‑tRNA synthetase/regulatory protein for RecA |
| ? | NC_000913 | 2822080 = | 117 (0.940) | intergenic (‑69/+59) | alaS/recX | alanyl‑tRNA synthetase/regulatory protein for RecA | |||||
TGCTCTATCGTGGCTATCTGATGGAAGATATCCAGGAGATTTGGCGAAATTTTGCCGACTGAACGCATACGGTATTTTACTTCCCAGTCAAGAAAACTTATCTTATTCCCACTTTTCAGTTACCAGCCCGGCGGTTAAGACACGCTGGAGCTGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2822200‑2822046‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggtAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGAAAACGCTGGATCTTAACTTTTTCTG > NC_000913/2822080‑2822227 ttCTCTATCGTTGCTATCTGATGGAAGCTATCCAGGATATTTGTCGATATTTTGCCGTATGAACGCATACGGTATTTTACTTCCCAGTCTAGAAAACTTATCTTATTCCCACTTTTCAGTTACCAGCCCGGCGGTTAAGACACGCTGGAG < 1:1703086/148‑1 CTCTATCGTGGCTATCTGATGGAAGATATCCAGGAGATTTGGCGAAATTTTGCCGACTGAACGCATACGGTATTTTACTTCCCAGTCAAGAAAACTTATCTTATTCCCACTTTTCAGTTACCAGCCCGGCGGTTAAGACACGCTGGAGCT > 1:1130545/1‑150 CTCTATCGTGGCAATCTGATGGAAGATATCCAGGAGATTTGGCGAAATTTTGCCGACTGAACGCATACGGTATTTTACTTCCCAGTCAAGAAAACTTATCTTATTCCCACTTTTCAGTTACCAGCCCGGCGGTTAAGACACGCTGGAGCT < 2:1074603/150‑1 TCTATCGTGGCTATCTGATGGAAGATATCCAGGAGATTTGGCGAAATTTTGCCGACTGAACGCATACGGTATTTTACTTCCCAGTCAAGAAAACTTATCTTATTCCCACTTTTCAGTTAACAGCCCTGCGGTTAAGACACGCTGGAGCTG > 2:1534634/1‑150 CTATCGTGGCTATCTGATGGAAGATATCCAGGAGATTTGGCGAAATTTTGCCGACTGAACGCATACGGTATTTTACTTCTCAGTCAAGAAAACTTATCTTATTCCCACTTTTCAGTTACCAGCCCGGCGGTTAAGACACGCTGGAGCTGG < 2:1545047/150‑1 TATCGTGGCTATCTGATGGAAGATATCCAGGAGATTTGGCGAAATTTTGCCGACTGAACGCATACGGTATTTTACTTCCCAGTCAAGAAAACTTATCTTATTCCCACTTTTCAGTTACCAGCCCGGCGGTTAAGACACGCTGGAGCTGGT < 2:1517232/150‑1 TGGCTATCTGATGGAAGATATCCAGGAGATTTGGCGAAATTTTGACGACTGAACGCATACGGTATTTTACTTCCCAGTCAAGAAAACTTATCTTATTCACACTTTTCAGTTACCATCCCGGCGGTTAAGACAAGCTGGAGCTGGagtcga > 2:1966774/1‑144 CAGTTACCAGCCCGGCGGTTAAGACACGCTGGAGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCA > 2:343411/1‑150 AGTTACCAGCCCGGCGGTTAAGACACGCTGGAGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCAC > 2:602495/1‑150 ACCAGCCCGGCGGTTAAGACACGCTGGAGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATA > 2:522474/1‑150 ACCAGCCCGGCGGTTAAGACACGCTGGAGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATA > 1:631838/1‑150 ACCAGCCCGGCGGTTAAGACACGCTGGAGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATA > 2:1400974/1‑150 CAGCCCGGCGGTTAAGACACGCTGGAGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGTAGTAACATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCTTCAGATTGCCACGATAGA > 1:117158/1‑150 CAGCCCGGCGGTTAAGACACGCTGGAGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGA > 1:833771/1‑150 AGCCCGGCGGTTAAGACACGCTGGAGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCCCGATAGAG > 1:1670852/1‑150 AGCCCGGCGGTTAAGACACGCTGGAGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAG > 1:1679890/1‑150 CGGCGGTTAAGACACGCTGGAGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGA > 2:2093533/1‑150 GCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGAAAACGCTGGATCTTAACTTTT < 2:2211185/150‑1 GCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGACACGATAGAGAAGAAAACGCTGCATCTTAACTTTT > 1:917826/1‑150 CTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTCTGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGAAAACGCTGGATCTTAACTTTTT < 1:1421295/150‑1 TGGTAACTGAAAAGTGGGAATAAGATAGGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGAAAACGCTGGATCTTAACTTTTTC < 1:1692971/150‑1 TGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCTAAATTTCGACAAATCTCCTTGATATCTTCCATCAGATAGCCACGATAGAGCAGAAAACGCTGGATCTTAACTTTTTC < 1:91749/150‑1 TGGTAACTGAAAAGAGGGAATAAGATAAGTTTTATTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATATCGCCAAATCTCCTGGATATCTTCCATCAGATACCCACGATAGAGCAGAAAACGCTGGATCTTAACTTTTTC < 2:627436/150‑1 GGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAATTTTCGCCAAATCTCCTGTATATCTTCCATCAGATAGCCACGATAGAGCAGAAAACGCTGGATCTTAACTTTTTCT < 1:1074145/150‑1 GGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGAAAACGCTGGATCTTAACTTTTTCT > 2:1425225/1‑150 GGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGAAAACGCTGGATCTTAACTTTTTCT > 1:913744/1‑150 GGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGAAAACGCTGGATCTTAACTTTTTCT < 2:1983790/150‑1 GGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGAAAACGCTGGATCTTAACTTTTTCT > 1:280758/1‑150 GGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGAAAACGCTGGATCTTAACTTTTTCT > 1:273872/1‑150 GGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGAAAACGCTGGATCTTAACTTTTTCT < 1:1525447/150‑1 GGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGAAAACGCTGGATCTTAACTTTTTCT < 1:1324006/150‑1 GTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGAAAACGCTGGATCTTAACTTTTTCTG > 1:576651/1‑150 TGCTCTATCGTGGCTATCTGATGGAAGATATCCAGGAGATTTGGCGAAATTTTGCCGACTGAACGCATACGGTATTTTACTTCCCAGTCAAGAAAACTTATCTTATTCCCACTTTTCAGTTACCAGCCCGGCGGTTAAGACACGCTGGAGCTGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2822200‑2822046‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggtAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGAAAACGCTGGATCTTAACTTTTTCTG > NC_000913/2822080‑2822227 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |