Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 1,979,486 IS5 (+) +4 bp intergenic (‑271/‑264) insA ← / → uspC IS1 repressor TnpA/universal stress protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1979486 =0 (0.000)119 (0.940) 72/298 0.8 100% intergenic (‑271/‑267) insA/uspC IS1 repressor TnpA/universal stress protein
?NC_000913 2101749 = NA (NA)noncoding (1195/1195 nt) IS5 repeat region
* ? NC_000913 = 19794890 (0.000)117 (0.920) 78/298 0.6 100% intergenic (‑274/‑264) insA/uspC IS1 repressor TnpA/universal stress protein
?NC_000913 = 2290113 NA (NA)noncoding (1/1195 nt) IS5 repeat region

Only 100 of 222 total aligned reads displayed.

CTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGATTGATTAATT  >  NC_000913/1979337‑1979635
                                                                                                                                                     |                                                                                                                                                     
taaaaactggggataacgccttaaatggcgaagaaacggtctaaatagtctgattcaaggcatttacgggagaaaaaatcggctcaaacaggaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccc                                                                                                                                                       >  1:1341723‑M1/150‑150 (MQ=255)
taaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccc                                                                                                                                                       >  1:1352751‑M1/150‑150 (MQ=255)
ctaGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAAc                                                                                                                                                       <  2:1585549/150‑1 (MQ=255)
ctaGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAAc                                                                                                                                                       >  1:688670/1‑150 (MQ=255)
ctaGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAAc                                                                                                                                                       <  1:1501033/150‑1 (MQ=255)
 aaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCt                                                                                                                                                      <  2:1646318‑M1/2‑1 (MQ=255)
 aaaaactggggataacgacttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCt                                                                                                                                                      >  2:224355‑M1/149‑150 (MQ=255)
  aaacctggggataacgccttaaatggcgaagaaccggtcaaaatcggctgattcaaggcagttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgaggcagccgagaagaatttccccgcttattcgcaccttccCTa                                                                                                                                                     >  1:275485‑M1/148‑150 (MQ=255)
  aaaactggggataacgacttaaatggcgaagaaacggtctaaatatgcggattcaaggcatttacgggagaaaaaatcggctctaacatgaagaaatgaaatgactgagtcagacgagaagaatttccccgcttattcgcaccttccCTa                                                                                                                                                     >  2:726913‑M1/148‑150 (MQ=255)
   aaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaa                                                                                                                                                    <  2:1603013‑M1/4‑1 (MQ=255)
   aaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaa                                                                                                                                                    <  2:1575591‑M1/4‑1 (MQ=255)
    caagcaaAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCAACGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAg                                                                                                                                                   <  1:995270‑M1/150‑2 (MQ=255)
    aactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAt                                                                                                                                                   <  2:929242‑M1/5‑1 (MQ=255)
     actggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAtt                                                                                                                                                  <  2:146697‑M1/6‑1 (MQ=255)
     actggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAtt                                                                                                                                                  >  2:178039‑M1/145‑150 (MQ=255)
               acgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcaCTAATTAAATACaaag                                                                                                                                        <  1:35540‑M1/16‑1 (MQ=255)
                cgccttaaaaggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagacgagaagaatttccccgcttattcgcaccttccCAAATTAAATACaaaga                                                                                                                                       <  2:1475259‑M1/17‑1 (MQ=255)
                aaaCAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaac                                                                                                                                       <  1:920442‑M1/150‑14 (MQ=255)
                  ccttaaatggcgaagaaacggtcttaataggctgattcaaggcatttacgggataaaaaatcggctcaaacatgaagaattgtaatgactgagtcagcggagaagaatttccccgcttattcgcaccttccCTAATTAAATACaaagaaa                                                                                                                                     >  2:396722‑M1/132‑150 (MQ=255)
                   cAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaag                                                                                                                                    <  1:706486‑M1/150‑17 (MQ=255)
                    aGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagt                                                                                                                                   <  2:1897070‑M1/150‑18 (MQ=255)
                     taaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGc                                                                                                                                  <  1:579348‑M1/22‑1 (MQ=255)
                     taaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGc                                                                                                                                  >  2:856211‑M1/129‑150 (MQ=255)
                      aaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGca                                                                                                                                 >  1:487363‑M1/128‑150 (MQ=255)
                      aaatggcgaagaaacggtataaataggcttcttcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGca                                                                                                                                 >  2:982593‑M1/128‑150 (MQ=255)
                       aataatCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccc                                                                                                                                <  2:1432962‑M1/150‑21 (MQ=255)
                         taatCGAAATGGGATGTGGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctg                                                                                                                              <  2:323687‑M1/150‑23 (MQ=255)
                            tCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgata                                                                                                                           <  2:558071‑M1/150‑26 (MQ=255)
                                gaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACt                                                                                                                       <  1:557377‑M1/33‑1 (MQ=255)
                                aaTGGGATGTTGAGAACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtcccttatatgag                                                                                                                       <  1:445110‑M1/150‑30 (MQ=255)
                                     ggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACttaatg                                                                                                                  >  2:2015456‑M1/113‑150 (MQ=255)
                                      aTGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatg                                                                                                                 <  2:121892‑M1/150‑36 (MQ=255)
                                        gTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtt                                                                                                               <  2:1839513‑M1/150‑38 (MQ=255)
                                        ctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACttaatgtta                                                                                                               <  1:1168196‑M1/41‑1 (MQ=255)
                                         taaataggctgattcaagtcatttactggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACttaatgttaa                                                                                                              >  1:2007825‑M1/109‑150 (MQ=255)
                                          tGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttg                                                                                                             >  1:1424133‑M1/1‑111 (MQ=255)
                                          tGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttg                                                                                                             <  1:1860935‑M1/150‑40 (MQ=255)
                                          aaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgtaatgactgagtcagccgagaagaatttccccccttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACttactgttaat                                                                                                             <  2:290523‑M1/43‑1 (MQ=255)
                                              cacaGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcat                                                                                                         >  2:481407‑M1/1‑107 (MQ=255)
                                               ggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAAt                                                                                                        <  1:1711411‑M1/48‑1 (MQ=255)
                                                    attcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGtttt                                                                                                   >  2:1282444‑M1/98‑150 (MQ=255)
                                                    attcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGtttt                                                                                                   >  2:1736122‑M1/98‑150 (MQ=255)
                                                     ttcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTa                                                                                                  <  2:500484‑M1/54‑1 (MQ=255)
                                                         tAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccata                                                                                              <  1:1816282‑M1/150‑55 (MQ=255)
                                                             tCACCGTAAATAATCATCTGCTATAAATAATCACTGTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaagctgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaac                                                                                          >  1:320179‑M1/1‑92 (MQ=255)
                                                              tttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTa                                                                                         >  2:215525‑M1/88‑150 (MQ=255)
                                                                ccGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagg                                                                                       >  1:1403269‑M1/1‑89 (MQ=255)
                                                                    ggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACt                                                                                   <  1:478385‑M1/69‑1 (MQ=255)
                                                                      agaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTg                                                                                 >  2:1291110‑M1/80‑150 (MQ=255)
                                                                        aatCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatca                                                                               <  1:567159‑M1/150‑70 (MQ=255)
                                                                          aaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTa                                                                             >  1:1647908‑M1/76‑150 (MQ=255)
                                                                           aaatcgggtcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTaa                                                                            <  2:626064‑M1/76‑1 (MQ=255)
                                                                              tcggctcaaacattaagaaatgaaatgactgagtcagccgagaagaatttccacgcttattcgaaaattccCTAATTAAATACAAAGATAGGAAACAATAAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGc                                                                         >  1:9108‑M1/72‑150 (MQ=255)
                                                                              cTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtc                                                                         <  2:572551‑M1/150‑76 (MQ=255)
                                                                                  tataAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatca                                                                     >  1:1585914‑M1/1‑71 (MQ=255)
                                                                                  cgcaaacatgaagaaatgaaaagactgaggcagccgagaagaatttccgagcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGgag                                                                     >  2:1920184‑M1/68‑150 (MQ=255)
                                                                                     aaataaTCACATTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaact                                                                  <  1:280737‑M1/150‑83 (MQ=255)
                                                                                      aataatCACTTACATGCAATACCAGATAAGCTATTTTTAAACAGAAACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacat                                                                 >  2:145483‑M1/1‑67 (MQ=255)
                                                                                       ataatCACTTTCATGCAATAACATATAAGCTAATTTTAAACAGACACTTACCGCACAACAAACTAAtgaaggtgcgaacaagtccctgatatgagatcatgattgtcatctggagccatagaacagggtacatcatgagtcatcaactta                                                                >  1:63918‑M1/1‑66 (MQ=255)
                                                                                           gaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTac                                                            <  2:350086‑M1/92‑1 (MQ=255)
                                                                                              cTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctcatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttacattcgc                                                         >  1:1256593‑M1/1‑59 (MQ=255)
                                                                                                aatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCCACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTAt                                                       <  2:317251‑M1/97‑1 (MQ=255)
                                                                                                aatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTAt                                                       <  2:610708‑M1/97‑1 (MQ=255)
                                                                                                  tgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTAttt                                                     <  2:1239852‑M1/99‑1 (MQ=255)
                                                                                                  cATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttacctcgccgaca                                                     >  2:1138275‑M1/1‑55 (MQ=255)
                                                                                                   aTGCTATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTTAggaaggtgcgaacaagtccctcatatgagatagtgtttgtcatctggagccatagaacagggttcatcatgaataatccacttaccttcgccgaca                                                    >  1:1017421‑M1/1‑54 (MQ=255)
                                                                                                     gCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagt                                                  <  2:688670‑M1/150‑99 (MQ=255)
                                                                                                     gCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgagaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcataaaattaccttcgccgacagt                                                  >  1:960885‑M1/1‑52 (MQ=255)
                                                                                                      cAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtg                                                 >  2:905866‑M1/1‑51 (MQ=255)
                                                                                                         tACCAGATAATCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaat                                              <  1:756225‑M1/150‑103 (MQ=255)
                                                                                                           tgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAAt                                            >  1:604386‑M1/43‑150 (MQ=255)
                                                                                                            gagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAAtt                                           >  2:462104‑M1/42‑150 (MQ=255)
                                                                                                              gtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTAc                                         <  2:1113179‑M1/111‑1 (MQ=255)
                                                                                                              gATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgagcaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagc                                         <  2:1327882‑M1/150‑108 (MQ=255)
                                                                                                                  tacgagaagaatttccccgcttattagcaccttacCTAATTAAATACAAAGAAAGTCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTCTCTTATAATTACAttt                                     >  1:244502‑M1/36‑150 (MQ=255)
                                                                                                                   ccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTg                                    >  1:199638‑M1/35‑150 (MQ=255)
                                                                                                                    cTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaag                                   >  2:1801384‑M1/1‑37 (MQ=255)
                                                                                                                       taagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAAt                                >  2:1723803‑M1/31‑150 (MQ=255)
                                                                                                                       gaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAAt                                <  2:1150913‑M1/120‑1 (MQ=255)
                                                                                                                        ttttAAACAGACACTTAACGCACAACAATATAAggaaggtgcgaacaagtccctgatatgagatcaggtttttcctctggagccatagcacatggttcctcatgagtcatcaacttaccatcgccgacagtgaagtcatcagtaagcgcc                               >  1:1929796‑M1/1‑33 (MQ=255)
                                                                                                                         tttAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccg                              >  1:508057‑M1/1‑32 (MQ=255)
                                                                                                                         agaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATta                              <  1:586807‑M1/122‑1 (MQ=255)
                                                                                                                         agaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATta                              <  2:1509440‑M1/122‑1 (MQ=255)
                                                                                                                             aaCAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcag                          >  2:440330‑M1/1‑28 (MQ=255)
                                                                                                                                      ttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCggg                 >  1:1544976‑M1/16‑150 (MQ=255)
                                                                                                                                       tACCGCCCAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaag                <  2:401380‑M1/150‑133 (MQ=255)
                                                                                                                                       tACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaag                <  2:1403269‑M1/150‑133 (MQ=255)
                                                                                                                                        aCCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaaga               >  2:194517‑M1/1‑17 (MQ=255)
                                                                                                                                         ttcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGt              <  2:651861‑M1/138‑1 (MQ=255)
                                                                                                                                         ccGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtacgcgccgtcagaccagattagag              >  2:1009916‑M1/1‑16 (MQ=255)
                                                                                                                                             caccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGtgatt          <  2:1860356‑M1/142‑1 (MQ=255)
                                                                                                                                              caacaaACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagcgttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagatttt         >  1:109247‑M1/1‑11 (MQ=255)
                                                                                                                                              aacttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTGTTACATATATTAACCACTTGTTTAATGCGGAGCATCAGTCCACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGtgattg         >  1:1232364‑M1/8‑150 (MQ=255)
                                                                                                                                               ccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGtgattga        <  2:1977599‑M1/144‑1 (MQ=255)
                                                                                                                                                 ttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTgattgatt      <  1:209539‑M1/146‑1 (MQ=255)
                                                                                                                                                  tccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGATTGATTa     <  1:1805869‑M1/147‑1 (MQ=255)
                                                                                                                                                  tccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGATTGATTa     >  2:1249331‑M1/4‑150 (MQ=255)
                                                                                                                                                   ccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGATTGATTaa    <  2:516201‑M1/148‑1 (MQ=255)
                                                                                                                                                     cTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgtgtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcc  <  1:1306641‑M1/150‑147 (MQ=255)
                                                                                                                                                     cTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcc  >  1:837829‑M1/1‑4 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
CTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGATTGATTAATT  >  NC_000913/1979337‑1979635

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.