| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 699431 | 90 (0.750) | 10 (0.090) | 9/182 | 12.6 | 8.4% | noncoding (7/98 nt) | RIP61 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP61 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | = 3639231 | 135 (1.210) | noncoding (23/98 nt) | RIP261 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP261 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GGATATATTTATTGATGAATCGATAATTTTTAGCGGGTTTTATTGAATGTTTATATTTTACGGGGGCCAAATTGCTGACAAAGTGCGATTTGTTCATGCCGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/699328‑699431‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggatAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTATGTCACAATCTGAAGCGGGCCAGCTGACCCGCTCGTTTTGGTGCGTACGATTACA < NC_000913/3639231‑3639137 GGATATATTTATTGATGAATCGATAATTTTTAGCGGGTTTTATTGAATGTTTATATTTTACGGGGGCCAAATTGCTGACAAAGTGCGATTTGTTCATGC < 1:2498581/99‑1GGATATATTTATTGATGAATCGATAATTTTTAGCGGGTTTTATTGAATGTTTATATTTTACGGGGGCCAAATTGCTGACAAAGTGCGATTTGTTCATGC < 1:2498619/99‑1 ATATATTTATTGATGAATCGATAATTTTTAGCGGGTTTTATTGAATGTTTATATTTTACGGGGGCCAAATTGCTGACAAAGTGCGATTTGTTCATGCCG > 1:1759047/1‑99 TATATTTATTGATGAATCGATAATTTTTAGCGGGTTTTATTGAATGTTTATATTTTACGGGGGCCAAATTGCTGACAAAGTGCGATTTGTTCATGCCGG > 2:424796/1‑99 TATATTTATTGATGAATCGATAATTTTTAGCGGGTTTTATTGAATGTTTATATTTTACGGGGGCCAAATTGCTGACAAAGTGCGATTTGTTCATGCCGG > 1:2276590/1‑99 ATATTTATTGATGAATCGATAATTTTTAGCGGGTTTTATTGAATGTTTATATTTTACGGGGGCCAAATTGCTGACAAAGTGCGATTTGTTCATGCCGGA > 2:1806045/1‑99 ATATTTATTGATGAATCGATAATTTTTAGCGGGTTTTATTGAATGTTTATATTTTACGGGGGCCAAATTGCTGACAAAGTGCGATTTGTTCATGCCGGA > 1:843328/1‑99 ATATTTATTGATGAATCGATAATTTTTAGCGGGTTTTATTGAATGTTTATATTTTACGGGGGCCAAATTGCTGACAAAGTGCGATTTGTTCATGCCGGA > 1:843620/1‑99 TATTTATTGATGAATCGATAATTTTTAGCGGGTTTTATTGAATGTTTATATTTTACGGGGGCCAAATTGCTGACAAAGTGCGATTTGTTCATGCCGGAT > 2:695442/1‑99 ATGATTCTATAATATTTATCGGTTTTTATTGAATTTTTATATTTTACGGGGGCCAAATTGCTGACAAAGTGCGATTTGTTCATGCCGGATAAGGCGTTC < 1:1154709/99‑1 AATTTTTAGCGGGTTTTATTGAATGTTTATATTTTACGGGGGCCAAATTGCTGACAAAGTGCGATTTGTTCATGCCGGATAAGGCGTTCACGCCGCATC < 1:1841552/99‑1 ATTTTTAGCGGGTTTTATTGAATGTTTATATTTTACGGGGGCCAAATTGCTGACAAAGTGCGATTTGTTCATGCCGGATAAGGCGTTCACGCCGCATCC < 2:253477/99‑1 ATTTTTAGCGGGTTTTATTGAATGTTTATATTTTACGGGGGCCAAATTGCTGACAAAGTGCGATTTGTTCATGCCGGATAAGGCGTTCACGCCGCATCC < 2:254293/99‑1 TTTTTAGCGGGTTTTATTGAATGTTTATATTTTACGGGGGCCAAATTGCTGACAAAGTGCGATTTGTTCATGCCGGATAAGGCGTTCACGCCGCATCCG < 1:1788504/99‑1 TAGCGGGTTTTATTGAATGTTTATATTTTACGGGGGCCAAATTGCTGACAAAGTGCGATTTGTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCAT < 2:1670500/99‑1 AGCGGGTTTTATTGAATGTTTATATTTTACGGGGGCCAAATTGCTGACAAAGTGCGATTTGTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCATG < 2:722210/99‑1 TCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAACAAAGCGCACTATGTCACAATCTGAAGCGGGCCAGCTGACCCGCTCGTTTTGGTGCGTAC > 1:1510739/1‑99 CATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAACAAAGCGCACTATGTCACAATCTGAAGCGGGCCAGCTGACCCGCTCGTTTTGGTGCGTACG > 1:1979126/1‑99 TGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAACAAAGCGCACTATGTCACAATCTGAAGCGGGCCAGCTGACCCGCTCGTTTTGGTGCGTACGAT > 2:2523933/1‑99 CGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTATGTCACAATCTGAAGCGGGCCAGCTGACCCGCTCGTTTTGGTGCGTACGATTAC < 2:1053387/99‑1 CGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTATGTCACAATCTGAAGCGGGCCAGCTGACCCGCTCGTTTTGGTGCGTACGATTAC < 2:1053386/99‑1 CGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTATGTCACAATCTGAAGCGGGCCAGCTGACCCGCTCGTTTTGGTGCGTACGATTAC < 1:2512608/99‑1 CGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTATGTCACAATCTGAAGCGGGCCAGCTGACCCGCCCGTTTTGGTGCGTACGATTAC > 2:955576/1‑99 GGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTATGTCACAATCTGAAGCGGGCCAGCTGACCCGCTCGTTTTGGTGCGTACGATTACA < 2:2310418/99‑1 GGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTATGTCACAATCTGAAGCGGGCCAGCTGACCCGCTCGTTTTGGTGCGTACGATTACA > 2:1435562/1‑99 GGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTATGTCACAATCTGAAGCGGGCCAGCTGACCCGCTCGTTTTGGTGCGTACGATTACA < 2:292770/99‑1 GGATAAGGCGTTCACGCCACATCCGGCATGAACAAAGCGCACTATGTCACAATCTGAAGCGGGCCAGCTGACCCGCTCGTTTTGGTGCGTACGATTACA < 2:1255367/99‑1 GGATATATTTATTGATGAATCGATAATTTTTAGCGGGTTTTATTGAATGTTTATATTTTACGGGGGCCAAATTGCTGACAAAGTGCGATTTGTTCATGCCGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/699328‑699431‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggatAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTATGTCACAATCTGAAGCGGGCCAGCTGACCCGCTCGTTTTGGTGCGTACGATTACA < NC_000913/3639231‑3639137 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |