| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 164,581 | A→C | 19.0% | intergenic (+47/‑149) | hrpB → / → mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 164,581 | 0 | A | C | 19.0% | 543.6 / 59.4 | 336 | intergenic (+47/‑149) | hrpB/mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| Reads supporting (aligned to +/- strand): ref base A (101/166); new base C (11/58); total (112/224) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.19e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 337 total aligned reads displayed.
CCGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAG > NC_000913/164432‑164728 | cGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCAt > 2:9939794/1‑150 (MQ=255) cGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCAt > 2:11109396/1‑150 (MQ=255) gTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATc < 2:1301240/150‑1 (MQ=255) tGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCa > 2:1152799/1‑150 (MQ=255) tGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCa > 1:13294809/1‑150 (MQ=255) tGAGGTGAAAAAAGATATGAAAGGGCGTTATCCCAAACATGTATGGCCTGACGACCCGGCAAATACTGCACCTACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTACATCTCCCTGTGGGAGAGGGCCGGGGTGGGGGCATCa > 1:4866924/1‑150 (MQ=255) agAGGCGCAAACAGAGATGAAAGGGCGTTCTCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACACGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCa < 2:8558376/149‑1 (MQ=255) aaaaaGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCAc > 2:5064163/1‑150 (MQ=255) agatATGAACGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGAAAATACGGCACCGACGCGACGGACTAAAAAGTATGCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGTGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑tc < 2:15292201/150‑1 (MQ=38) gagaTGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAACAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGtgcg > 2:1775914/1‑147 (MQ=255) agaTGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGtggac > 1:8065917/1‑146 (MQ=255) ttttaatgggCGTTACCCAAAACCTGTCGGGCCGGACGACCCGGCAAATACTCCACCGACGCGCCGGACGAAAATTTATTGTTATGGTTGTTTTTCTCCCCCCCCCTGTGGGTGTGGGCGGGGGTGAGGCCATCAGCGCGCACGT‑tcacc < 2:10689592/143‑1 (MQ=255) tttGAAAGGGCGTTATCCCAAACTTGTCTGGCCGGACGACCGGGCAAATAGTGCCCCGAGGCGAGGTACTAAAAAGTTTTCTTATGTTTGTTTTTCTCCATCTCCGTGTGGGTGTGGGCCGGGGTGTGGGCATCAGCGCGCACGT‑tcacc < 2:8321322/148‑1 (MQ=255) tattaatggggGTTACCCCAAACTTGTCGGGCGGGACGCCCCGGAAAATACGGCCCCCCCGCGCGGCACTAAATTTTTTTGTTATGGTTTTTTTCCCCCCCCCCCCTGTGGGTGTGGGCGGGGGTGCGGCCATCAGCGCGCACGT‑tcacc < 2:2930006/143‑1 (MQ=255) aTGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑tcaccc > 2:13552741/1‑150 (MQ=255) ggCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACTAAAAAGTATTGGTATGGTTGGTTTTCTCCCTCTCCCTGTGGTAGTGGGCCGGGGTGCGGGCATCAGCGCGCACGT‑Tcaccctcaccct < 2:8848768/150‑1 (MQ=38) ggCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCACTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGTGCGCACGT‑gcacccacaccca > 1:11623633/1‑149 (MQ=255) cGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑TCACCCTCACCCTaa > 1:1384269/1‑150 (MQ=255) ttATCCCAAACATGTGGGGCCGGACGACCCGGAAAAAACTGCACCGACGCGACGGACTAAAAATTTTTCTTATGGTTGGTTTTCTCCCTCTCCCTGTGGGTGTGGGCGGGGTTGCGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAAcc < 2:1380478/150‑1 (MQ=255) ttATCCCAAACATGTCTGGCCGGACGACCCGGCAATTACTGCACCGACGGGAGGGACGAAAAAGTATTCTTATGGTTGGTTTTCTCCCTCGCCCTGTGGGAGTGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAAcc < 2:15105557/150‑1 (MQ=38) aTCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑GGGCCCACACCCAAAcccc > 1:13600115/1‑149 (MQ=38) ccAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑TCCCCCCCCCCCACACCctcac > 2:208192/1‑148 (MQ=38) ccAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑TCAACCTCACCCAAACCCactc > 2:3730347/1‑150 (MQ=255) cAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCCGCGCGCACGT‑TCACCCACCCCCCAAcccacgcc > 1:8773140/1‑145 (MQ=38) cAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTAGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑GAAACCCCACCCAAAaccacaac > 1:10051377/1‑145 (MQ=37) aaaCATGTCTGGCCGGACGACCCGGCAAATACTGCCCCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTccc < 2:7696848/150‑1 (MQ=255) aTGTCTGGCCGGCCGCCCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTACGGTTGTTTTTCTCCCGCTCCCTGTGGGAGTGGGCCGGGGTGCGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCaa < 2:2369925/150‑1 (MQ=255) aTGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAATGTATTCGTACGTTTGGTTTTCTCCCTCGCCCTGTGGGAGCGGGCGGGGGTGAGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCaa < 2:3546248/150‑1 (MQ=38) aTGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑TCACCCTCACCCGAACCCGCGcccgccc > 2:10039306/1‑146 (MQ=255) aTGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑GGCCCCCCCCCCAAACCCGCACCCCCaa > 1:6132080/1‑150 (MQ=37) tgtggggCGGGACGCCCCGGAAAACAGTCCCCCGCCGCGACGGACCAAAATGTATCCGTACGTTTGTTTTTCCCCCTCTCCGTGTGGGTGTGGGCCGGGGTGTGGGCCTCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAg < 2:5464216/145‑1 (MQ=255) tGTCTGGCGGGACGACCCGGAAAATACTGCACCGCCGCGCGGGACTAAATTTTTTTGGTTTGTTGGTTTTTCTCCCGCCCCGGGTGGTTGTGGGCCGGGGTGCGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAg < 2:4523037/150‑1 (MQ=255) tGTCTGGCCGGACTCCCCGGAAAATACGGCACCGACGCCCCGGACTAAAATTTTTTGTTTTGGTTGTTTTTCCCCCTCGCCGTGGGGGAGTGGGCCGGGGGGCGGGCCTCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAg < 1:3589608/150‑1 (MQ=255) ggtggggCGGGACGCCCCGGCTAATCCGGCCCCGCCGGGAGGGACGAAAATGTTTTGTTATGGTTGTTTTTCGCCCACCCGGTGTGGGTGTGGCGGGGGGTGCGGGCCTCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAg < 2:1539313/145‑1 (MQ=255) ggTCTGGCGGGACGACCCGGCATATACTGCACCGACGCGACGGCCGAAAATGTATTCGTAGGGTTGGTTGTCTCCCTCTCCGGGTGGGAGAGGGCGGGGGTGCGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAg < 2:679797/149‑1 (MQ=255) tCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCCGCGCGCACGT‑GGACCCACACCCAAACCCACTACCCCAAcgg > 1:7559419/1‑150 (MQ=37) cTGGCCGGCCGACCCGGCAAATACTGCCCCGACGCGACGGACGAAAAAGTATACGTATGGTTGGTTTTCTCCCTCTCCCGGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGga < 2:1100442/150‑1 (MQ=38) cTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGGCACCC‑CACCCCAAACCCCACCCTCACgggg > 1:11174124/1‑149 (MQ=37) tGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑GGACCCGCAACCAAAACCACACCCACCAgggcg > 2:1143428/1‑148 (MQ=25) tGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑GCCCCCACACCCAAACCCACACCCCCAAGGgag > 2:2632735/1‑150 (MQ=37) gcgggACCACCCGGAAAATACTGCACCGACGCGCCGGACGAAAATGTATCCTTATGGTTGTTTTTCTCCCTCTCCGTGTGGGTGTGGGCGGGGGTGAGGGCCTCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGagag < 1:11109396/147‑1 (MQ=255) gCCGGAGGACCCGCAAAATCCTGCCCCGCCGCGCCGCCCTAAAATTTTTTGGTTCGGTGGGTTTTCTCCCCCCCCGGGTGGGTGCGGGCGGGGGGGCGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTTGAGGGagag < 2:1384269/150‑1 (MQ=255) gCCGGACGCCCCGGAAAATACTGCACCGACGCGCCGGACTAAAATTTTTTCGTACGTTTGTTTTTCGCCCCCGCCGTGTGGGTGTGGGCGGGGGTGCGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGagag < 2:4635590/150‑1 (MQ=255) gacCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGG‑TGACCCGCCCCCGAAACCACAACCACAAGGGCGTGGGGGCCg > 1:10257671/1‑150 (MQ=25) gacCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGG‑TCACCCACACCCAAAACCACACCCACAAGGGGGAGGGGGccc > 1:5044091/1‑149 (MQ=37) gaaaaTACTGCCCCGACGCGACGGACGAAAAAGTATTCGTACGGTTGGTTTTCTCCCTCGCCCTGGGGGAGAGGGCGGGGGTGTGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAg < 2:6278142/148‑1 (MQ=255) aCTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGT‑GGCCCCGCACCCGAACCCACACCCACAAGGGGGGGGGGCCCGCTCGGGCACaaa > 1:1759936/1‑150 (MQ=25) gtGCACCTACGCTACGTACTAAAAAGTTTTCGTATGGTTGTTTTTCTCCCTCTCCGTGTGGGTGTGGGCGGGGGTGTGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAAt < 1:12828432/149‑1 (MQ=255) tGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑TCACCCACACCCCAAACCAAACCCCAAACGGCGAGGGGCCCCATCGAGCACcaaat > 1:15270681/1‑148 (MQ=25) gCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAAc < 2:9614089/109‑1 (MQ=255) ccccgccgCGACGGCCGAAAAAGTATTCGTATGGTTGGTTTTCTCCCTCTCCCTGTGGGAGCGGGCCGGGGTGCGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAAtttt < 2:7506104/148‑1 (MQ=38) cACCGCCGCGCCGCAAGAAAATGTATTCGTATGGTTGGTTTTCTCCCTCTCCGTGTGGGAGGGGGCGGGGGTGAGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAAtttt < 1:3049147/150‑1 (MQ=38) cACCGACGCGACGGACGAAAAATTTTTCGTCTGGTTGGTTTTCTCCCTCTCCGTGTGGGTGAGGGCGGGGGTGAGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAAtttt < 1:10117301/150‑1 (MQ=38) ccGACGCGCCGGACTAAATTGTTTTCGTATGGTTGTTTTTCCCCCTCTCCCTGTGGGTGTGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTga < 2:13259715/150‑1 (MQ=38) cggacgAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATAtct < 2:2213046/150‑1 (MQ=255) aaaatttATTCGTATGGTTGGTTTTCTCCCTCTCCCTGTGGGTGTGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATAtcttcttct < 1:11377300/144‑1 (MQ=38) aaaaGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑GGCCCCACCCCCAAACCCAATCCCACAATAGCGGGGGGGACGATCGCGCACAAAAATTGATTGATATATTATTATg > 1:3451362/1‑150 (MQ=12) attttttCGTATGGTTGGTTTTCTCCCTCTCCGTTTGGGATTGGGCGGGGGTGTGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTc < 2:1179741/145‑1 (MQ=255) atgTATTCGTTGGGTTGTTTTTCCCCCGCCCGGGGTGGGTGTGGGCGGGGGTGCGGGCCTCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTc < 1:4543404/148‑1 (MQ=255) actttttCGTCTGGTTGGTTTCCTCCCCCTCCGTGTGGGCGTGGGCCGGGGTGCGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTc < 2:3084833/145‑1 (MQ=255) acgTAGTCGTAAGGTTGGTTTTCTCCCTCGCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGG‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTc < 2:14252524/148‑1 (MQ=255) tttgggTAGGGTGGGTTTCCGCCCTCGCCGGGGGGGCGGGGGCGGGGGGGCGGGCCTCAGCGCGCACGG‑GCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTg < 1:12008081/145‑1 (MQ=255) tagtCGTAAGGTTGGTTTCCGCCCCCCCCCGGTGGGAGCGGCCCGGGGGGCGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTg < 2:382965/147‑1 (MQ=255) aTTCGTATGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGTGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGt < 2:8103885/150‑1 (MQ=255) ttCGTATGGTTGTTTTTCTCCCTATCCCTGGGGGAGCGGGCGGGGGTGTGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTa < 1:9173553/150‑1 (MQ=255) ttCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGCGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTa < 2:1235319/150‑1 (MQ=255) tcttttggttggttTTCTCCCTCTCCGTGTGGTTGTGGGCGGGGGTGTGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTaa < 2:5832386/144‑1 (MQ=255) ttagggttggttTCCGCCCTCTCCGTGGGGGTGTGGGCGGGGGTGCGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACa < 1:210041/146‑1 (MQ=255) gtatgtttgtttTTCTCCCTCGCCGTGTGGGTGGGGGCCGGGGTGCGGGCCTCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACa < 1:8187721/144‑1 (MQ=255) gTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGACCGGGGTGAGGGCATCAGCGCACACGT‑TCACCCACACCCGAACCCACTCCCACAAGGGGGAGGGGACCGATCGAGCACAAATTTTTTGAGATATATTCTTCTGTATTGTAACa > 1:5273760/1‑150 (MQ=37) aaGGTTGGTTTTCTCCCTCTCCCTGGGGGAGTGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACaga < 1:15389350/150‑1 (MQ=255) gttgtttTTCTCCCTCTCCGTGTGGTCGTGGGCGGGGGTGAGGGCCTCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACagaaga < 1:5503924/150‑1 (MQ=255) tgggttTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAgaagaa < 1:9474047/148‑1 (MQ=255) gtggttTTCGCCCTCCCCCTGGGGGTGTGGGCCGGGGTGCGGGCCTCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAgaagaa < 1:645128/149‑1 (MQ=255) ggccctctcccaCAGGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGT‑TCACCCACACCCTAACCCACACCCTCAAGGGGGAGGGGACCCATCCAGCCCAAATTTTGTGAGTTATATTCTTCTGTGTTGTTACAGAAGAACAGaaaaa > 2:11745862/3‑149 (MQ=255) gccctctcccgGGGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATc < 1:14880499/149‑1 (MQ=255) ccctctccctGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑GGACCCGCACCCGAACACTCTACCAAAAGGGAGAGGGGTCCCGTCGAGCACAAATTTTTAGATTTATATTATTCTTTGTATTAACAGAAGAACAGAAAAtag > 2:3621674/1‑148 (MQ=16) ccctccccctGTGGGAGTGGGCGGGGGTGAGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCg < 2:3349574/150‑1 (MQ=255) cctctccctGTGGGAGAGGGCCGGGGTGAGGGCATCCGCGCGCACGT‑GCCCCCGCACCCGAAACCGCTCCCGCCAGGGGGGGGGGGCCGCTCGGGCACCAATTTTGAGGGATATCTTATTATGTCTTGTTACAGTAGGACAGAAAATCgg > 2:5170107/1‑150 (MQ=19) ctccccctGGGGGAGCGGGCCGGGGGGCGGGCCTCAGCGCGCCCGT‑TCACCCTCACCCTAACCCTCGCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCggg < 2:12411959/150‑1 (MQ=255) cactccctGTGGGTGTGGGCGGGGGTGTGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCggg < 1:2632735/148‑1 (MQ=255) ctGGGGGAGCGGGCGGGGGTGCGGGCCTCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTg < 2:1891687/150‑1 (MQ=255) tgtgGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑GGACCCACACCCAAACCCACACCCACAAGGGGGAGGGGCCCGAGCCCGCACAAAGTTTGTGAGATATATTATTGTGTGGTTTAACAGAAGAACATAAAAACggggtgtttg > 2:12777529/1‑143 (MQ=255) ggggtgcgggCGGGGGTGCGCGCCTCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTgcgc < 1:6677105/143‑1 (MQ=255) ggggcgtgggCGGGGGTGCGGCCCTCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTgcgc < 2:10491560/143‑1 (MQ=255) ggAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑TCACCCCCACCCAAAACCACAACCACAAAGGAGAGGGGGCCCATACAGCACAAAAGTTTAGAGATATATTCTAATGTCTTTTAACAGAAAAAAAGAAAATAGGGCTTTTTCGccg > 2:12877215/1‑149 (MQ=255) gCCGGGGTGAGGGCATCAGCGCGCACGT‑TCACCCGCACCCCAAACCTCGCCCACCCTGGCGCGGGGACCCATAGAGCACAAAATTTGGGAGATATATTCATCGGTTTTGTTAGAGAAGAAAAGCAAAACAGGCTTTTGGGACTGTATAtt > 2:7372347/1‑150 (MQ=255) ccGGGGTGAGGCCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTg < 2:6145551/150‑1 (MQ=255) ccGGGGGGCGGGCCTCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTg < 2:14620384/150‑1 (MQ=255) cGGGGAGAGGGCCTCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGc < 1:12461192/150‑1 (MQ=255) ggggTGCGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCTGGCTTTTGCGCCTGAATATTGCg < 2:4171764/150‑1 (MQ=255) ggggTGAGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCg < 2:11302830/150‑1 (MQ=255) ggggcgggCCTCAGCGCGCACGG‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGga < 1:14056666/145‑1 (MQ=255) ggTGCGGCCCTCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGga < 1:11750620/150‑1 (MQ=255) ggTGAGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGga < 2:10191159/150‑1 (MQ=255) ggTGAGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGga < 1:12275009/150‑1 (MQ=255) cttccacgCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGga < 1:14225456/143‑1 (MQ=255) ggCATCCGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTCCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGaaaaa < 1:251097/150‑1 (MQ=255) ggCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGaaaaa < 2:14847711/150‑1 (MQ=255) gccATCCGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGaaaaa < 1:3980254/148‑1 (MQ=255) | CCGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGT‑TCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAG > NC_000913/164432‑164728 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |