Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 2,470,427 C→A 16.5% Q433K (CAA→AAA)  gtrS → serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,470,4270CA16.5% 1516.6 / 97.1 566Q433K (CAA→AAA) gtrSserotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage
Reads supporting (aligned to +/- strand):  ref base C (160/294);  new base A (100/10);  total (262/304)
Fisher's exact test for biased strand distribution p-value = 4.94e-28
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 583 total aligned reads displayed.

TTGTAGTATCTCTTTTTGGAATATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATGCC  >  NC_000913/2470278‑2470576
                                                                                                                                                     |                                                                                                                                                     
 tGTAGTATCTCTTTTTGGAATATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCa                                                                                                                                                      >  2:14244748/1‑150 (MQ=255)
  gtagtaTCTCTTTTTGGAATATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTaaa                                                                                                                                                     >  1:12519788/1‑150 (MQ=255)
  gtagtaTCTCTTTTTGGAATATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCaa                                                                                                                                                     <  2:12740996/150‑1 (MQ=255)
   tagtaTCTCTTTTTGGAATATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTaaaa                                                                                                                                                    >  1:8164424/1‑150 (MQ=255)
      taTCTCTTTTTGGAATATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGaa                                                                                                                                                 <  2:2487301/150‑1 (MQ=255)
      taTCTCTTTTTGGAATATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATGTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGaa                                                                                                                                                 <  1:15019760/150‑1 (MQ=255)
          tctTTTTGGAATATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTAtaaaataaataaaataaaaaa                                                                                                                                             >  2:10601579/1‑147 (MQ=255)
           ctTTTTGGAATATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAAATCAAAGAAATaaa                                                                                                                                            >  1:3379422/1‑150 (MQ=255)
            tttttGGAATATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAg                                                                                                                                           <  2:1602412/150‑1 (MQ=255)
                  gAATATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATa                                                                                                                                     >  2:3672172/1‑150 (MQ=255)
                   aaTATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTAAAATAAATCAACAAAATat                                                                                                                                    >  2:2108378/1‑149 (MQ=255)
                   aaTATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAAAAATTCAAAAAAAACAAGACAATat                                                                                                                                    >  2:4624091/1‑149 (MQ=255)
                     tatCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCg                                                                                                                                  <  2:9086615/150‑1 (MQ=255)
                        ctcAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTTATTTTTAAAATAATTAAAAGAAATAAAGACAATAGCGATg                                                                                                                               >  1:11123966/1‑150 (MQ=255)
                         tcAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTAAAATAAATAAATAAAATATCGATGt                                                                                                                              >  1:3894171/1‑150 (MQ=255)
                         tcAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTAAAATAAAACAAAAAAAAAGAGAttt                                                                                                                              >  1:11961885/1‑148 (MQ=255)
                         tcAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTAAAAAAAAATACAAAGAAAAAAAGACAAAACCGaggg                                                                                                                              >  2:13045617/1‑147 (MQ=255)
                           aaTTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTTATTTATAAAATAATTAAAAGAAATAAAAAAAAAAGCGATGTaa                                                                                                                            >  1:13137606/1‑150 (MQ=255)
                             tgctATGTGCCACTTATCGGGGAAGCATATAGAGATTTAAGCAACCATTTATTTGGAAGGCATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAg                                                                                                                          <  2:15421685/147‑1 (MQ=255)
                              tttATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGc                                                                                                                         <  1:9534441/150‑1 (MQ=255)
                               ttATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAAAAATTAAAATAAAAAAATACAAAAGCGATGTAAAgaa                                                                                                                        >  2:13794669/1‑148 (MQ=255)
                                      tCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGtt                                                                                                                 <  2:7366292/150‑1 (MQ=255)
                                      tCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAAACAATACAATATCGATGTAAATCACTAAGtt                                                                                                                 >  1:9186441/1‑150 (MQ=255)
                                       cATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGttt                                                                                                                <  2:14082266/150‑1 (MQ=255)
                                        aTTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAAATAAAAAAAAAAAAGAAAAAAGCGATGGAAAGGACGAAGTTTa                                                                                                               >  1:265717/1‑150 (MQ=255)
                                        aTTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAAATTATAAAATAATTAAAAGAAATAAAGAAAAAAGCGAATTAAAGCAATAATTTTa                                                                                                               >  2:14532129/1‑150 (MQ=255)
                                         tttttCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTaa                                                                                                              <  2:5427784/150‑1 (MQ=255)
                                          ttttCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTaaa                                                                                                             <  1:72074/150‑1 (MQ=255)
                                                gggAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAGAGCACTAAGTTTAAATTgcgc                                                                                                       <  2:665761/150‑1 (MQ=255)
                                                 ggAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACGAATTTTATATTgcgcg                                                                                                      >  2:11567879/1‑150 (MQ=255)
                                                  gAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTgcgcgc                                                                                                     <  1:9918077/150‑1 (MQ=255)
                                                   aaGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTAAAATAAAACAATACAAAATCGATGTAAAGCCAGAAGGTTAAATTTCGCGcc                                                                                                    >  1:15193093/1‑150 (MQ=255)
                                                      gATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAAt                                                                                                 <  1:4314642/150‑1 (MQ=255)
                                                      gATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAAATCAAAGAAATAAATACAAAAGCGATTTAAAGCACAAAGTTTAAATTGCGCGCCAAt                                                                                                 >  2:4677161/1‑150 (MQ=255)
                                                         ataGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTGTTTTTAATTTATAAAATAATTAAAATAAAAAAAGACAAAAACGATTTAAAGCACTAAGTTTAAAATTAGCGCCAAGCag                                                                                              >  1:4671857/1‑149 (MQ=255)
                                                            gagaTTTCAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGATTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGgc                                                                                           <  1:1580794/150‑1 (MQ=255)
                                                            gagaTTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGgc                                                                                           <  1:699257/150‑1 (MQ=255)
                                                            gagaTTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAAAAATTAAAATAAATAAAAACAAAAGAGATTTAAAGCAAAAATTTTTAATTTGGCGCCAAACAttgg                                                                                           >  1:5937284/1‑147 (MQ=255)
                                                               aTTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTGTTTTTTTTTTATAAAAAAATTAAAAAAAAAAAAAAAAAAAGCGCATTTAAGCACAAAGATTAAAATTCGCGCCCAACAAGgcgcg                                                                                        >  1:6787030/1‑150 (MQ=255)
                                                                tttAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTGTTTTTAATTTTTAAAATAAATAAAATAAAAAAAAAAAAAAACGATTTAAAGCACTAAGTTTAAAATTAGCGCCCAACAGTgcgcgc                                                                                       >  1:302506/1‑150 (MQ=255)
                                                                     gcaagcaTTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAg                                                                                  <  2:11162163/150‑1 (MQ=255)
                                                                      caagcaTTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTTTAAAAAAATTAAAAAAAAAAAAAAAAAAATAGATTTAAATCACAAAGTTTAAATTTCGCGCCCAACAGGGCGCGcaccaac                                                                                 >  1:13768064/1‑146 (MQ=255)
                                                                      caagcaTTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAATCACTAAGTTTAAATTGCGCGCCCATCATGGCGCGCCCAAGc                                                                                 >  2:4860065/1‑150 (MQ=255)
                                                                       gggcaTTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAAATCAAATAAAACAAGACAAATGCGCTGTAAAGCACAAAGTTTAAAATGCGCGCCCAAGATGGGGCGCCCCAGcg                                                                                >  2:14860444/3‑149 (MQ=255)
                                                                       aagcaTTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAATAAATCAAGACAATAGAGATTTAAATCACTAAGTTTAAATTTCGCGCCAATCATGGCGCGCACAAGCt                                                                                >  2:13669785/1‑150 (MQ=255)
                                                                       aagcaTTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATAAAGACAATAGCGATGTAAAGCACAAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAACCt                                                                                >  2:2217344/1‑150 (MQ=255)
                                                                       aagcaTTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTAAAAGAAATCAAGACAAAATCGATGTAAATCACTAAGTTTAAATTTCGCGCCAATCATGGCGCGCACAAGcg                                                                                >  2:9443262/1‑149 (MQ=255)
                                                                       aagcaTTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAAAAATTAAAATAAAACAAAAAAAAAACGCAGTTAATAACTAATTTTTAATTTAGCGCCACAGATTGGGCGCACAAGCt                                                                                >  2:38469/1‑150 (MQ=255)
                                                                           ttttttttGTATTTTATTTTTTGTTGGACTTTTTATTATACATAAATTTTTTTTTTTTATTTTATAAAATAATTAAAACATTTAAATAAAATTGCTATTTAAAGCACTTTTTTTAACTTGCGCGCAAATCTTGGCGCGCACAAGCTataa                                                                            <  1:14592832/149‑1 (MQ=255)
                                                                           atttatttGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTataa                                                                            <  2:13319272/150‑1 (MQ=255)
                                                                                  tGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAAc                                                                     <  2:8164424/150‑1 (MQ=255)
                                                                                  tGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAAAAAATAAAATAAATAAAGACAAAAGAGATGTAAAGGACTAAATTTAAATTTCGCGCCAATAATTTCGCGCACAAGCTATAATaacaac                                                                     >  2:3330493/1‑150 (MQ=255)
                                                                                    gAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAAATTATAAAAAAAATAAAAGAAATAAAGACAAAATCGATTTAAAACACTAAGTTTAAATTTCGCCCCAAACAAGGCGCCCCCAACCAAAAAAACCaaaca                                                                   >  2:7186644/1‑147 (MQ=255)
                                                                                       tGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAAt                                                                <  2:5036110/150‑1 (MQ=255)
                                                                                          aTTTTTCGTTCGACCTTTGCTTATACATAACAGTGTTTTTTTTAATTTATAAAATAATTCAAAGAAATCAACACAATAGCTATGTAAAGAACTAATTTTAAATTGCGCGCCAATCTTGGCGCGCACAAGCTATAATACCAACCTAATTtc                                                             <  1:7385167/150‑1 (MQ=255)
                                                                                           tttttCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAATAAATCAAGACAATAGCGATTTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTtct                                                            >  2:10303413/1‑150 (MQ=255)
                                                                                           tttttCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAAAAGCGATTTAAAGCCAGAAGTTTAAATTTCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAAATtct                                                            >  2:6466652/1‑150 (MQ=255)
                                                                                            ttttCGTTCGACCTTTGCTTATACATAACAGTCGCTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTTCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTtctc                                                           >  2:3553247/1‑150 (MQ=255)
                                                                                                       ccTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGTTGTAAAGCACTAAGTTTAATTTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTaga                                                <  1:11508748/150‑1 (MQ=255)
                                                                                                         tttGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGt                                              <  2:2723247/150‑1 (MQ=255)
                                                                                                           ttcTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAATAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGa                                            <  1:3636103/148‑1 (MQ=255)
                                                                                                           tGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGa                                            <  1:7577113/150‑1 (MQ=255)
                                                                                                           tGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGa                                            <  2:4249205/150‑1 (MQ=255)
                                                                                                            gCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGAc                                           <  1:6203881/150‑1 (MQ=255)
                                                                                                            gCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGAc                                           <  1:12166033/150‑1 (MQ=255)
                                                                                                              ttATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAATAAATAAATACAATATCGATTTAAATCACTAAGTTTAAATTTAGCGCCAATCATTGCGCGCACAAGCTATAATAACAAACTAATTTATACTACTCTTATAGTGACta                                         >  2:15230926/1‑150 (MQ=255)
                                                                                                              ttATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTTCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCGTAGAGTGACta                                         >  2:10453237/1‑150 (MQ=255)
                                                                                                                   cATAACAGTCGTTTTTTTAAATTATAAAAAAAAACAAAGAAAAAAACACAAAAGCCCTGTAAAGCACAAACTTTAAAATGCCCCCCAAACCAGGCGCCCCCAACCCATAAAACCCACCAAAATTCTCCACCCCGGCGAGTGACGATAtca                                    >  2:4555868/1‑149 (MQ=255)
                                                                                                                    aTAACAGTCTTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAATTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATAtctc                                   <  1:2888579/150‑1 (MQ=255)
                                                                                                                    aTAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAAAAGCGATGTAAAGCACTAAGTTTAAATTGCCCGCCAATCATGGCGCGCACAAGCGATAATACCAACCTAATTTCTCCTCCGCGTAGAGTGACTATAtcgc                                   >  2:8891126/1‑148 (MQ=255)
                                                                                                                    aTAACAGTCGTTTTTTTAATTTATAAAATAATTAAAAGAAATAAAGACAAAAGCCATGTAAAGCACTAATTTTTAAATTCGCGCCAATAAAGGCGCGCACAAGCTATAAAAACAACCAAAATACTCCTCCACTTAGAGTGACTATAactc                                   >  2:12357692/1‑150 (MQ=255)
                                                                                                                    aTAACAGTCGTTTTTTTAATTTATAAAATAAATCAAAGAAAACAAGACAAAAGCGATGTAAATCACTAAGTTTAAATTTCGCGCCAAACATGGCGCGCCCAAGCGATAATAACAACCAAATTTATCCACCTCTTAGAGTTAATATAtcta                                   >  2:6089876/1‑149 (MQ=255)
                                                                                                                      aaCAGTCGTTTTTTTAATTTAAAAAAAAATTAAAAGAAATCAAGACAAAAGCGATGTAAAGCAAAAAGTTTAAAATTCGCGCCAATCATGGCGCGCACAAGCAATAATAACAACCTAATTTATACTCAGCATAGAGTGAATATATCACCt                                 >  2:7742951/1‑150 (MQ=255)
                                                                                                                        cAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTACTTTCTCCTCCTCTTAGAGTGACTATATCTCCTGa                               <  2:564609/150‑1 (MQ=255)
                                                                                                                        cAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGa                               <  2:4474249/150‑1 (MQ=255)
                                                                                                                             gTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGaa                          >  1:5014288/1‑150 (MQ=255)
                                                                                                                              tttttttAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTctcctcc                                                       <  2:9560822/120‑1 (MQ=255)
                                                                                                                                 ttttAATTTATAAAATAATTCAAACAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAAGTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGc                      <  1:13886508/150‑1 (MQ=255)
                                                                                                                                 atatAATTTATAAAATAATTCAAAGAAAACAAGACAATAGCGAAGAACACCACTACGTATAAATTGCGCGACACTCCTGCCGCCCACAAGCTATAATACCAACCAAATTACTCCACCTCTTACAGTGACTATATCTCCTCATAGAATTGc                      >  1:10014881/4‑150 (MQ=255)
                                                                                                                                  tttAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCg                     <  1:15289783/150‑1 (MQ=255)
                                                                                                                                  tttAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCg                     <  1:11262434/150‑1 (MQ=255)
                                                                                                                                  tttAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAAGTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCg                     <  2:6958590/150‑1 (MQ=255)
                                                                                                                                   ttAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCgg                    >  1:2194832/1‑150 (MQ=255)
                                                                                                                                      aTTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTAt                 >  2:11389453/1‑150 (MQ=255)
                                                                                                                                       tttATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGc                      <  1:15461134/144‑1 (MQ=255)
                                                                                                                                       tttATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTAtt                <  2:9752952/150‑1 (MQ=255)
                                                                                                                                         tataAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGa              <  2:3001584/150‑1 (MQ=255)
                                                                                                                                         tataAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGa              <  1:8978951/150‑1 (MQ=255)
                                                                                                                                         tataAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGa              >  1:5731276/1‑150 (MQ=255)
                                                                                                                                          ataAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGAc             <  1:12768735/150‑1 (MQ=255)
                                                                                                                                           taAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACt            <  2:5859400/150‑1 (MQ=255)
                                                                                                                                           taAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACt            >  2:1102205/1‑150 (MQ=255)
                                                                                                                                           taAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCATCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACt            >  2:11841302/1‑150 (MQ=255)
                                                                                                                                             aaaTAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTg                       >  1:8614349/1‑137 (MQ=255)
                                                                                                                                             aaaTAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTg                       <  2:8614349/137‑1 (MQ=255)
                                                                                                                                             aaaTAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTAt          >  2:12530095/1‑150 (MQ=255)
                                                                                                                                              aataatTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTACAGGGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTTACTATATCTCCTGATAGAATTGCGGTATTGACTATc         <  2:8272626/150‑1 (MQ=255)
                                                                                                                                               ataatTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCa        <  1:1411721/150‑1 (MQ=255)
                                                                                                                                                 gatTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCaaa      <  1:10521660/149‑1 (MQ=255)
                                                                                                                                                     cAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATGcc  <  1:1932522/150‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
TTGTAGTATCTCTTTTTGGAATATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATGCC  >  NC_000913/2470278‑2470576

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: