New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2985877184 (1.070)4 (0.020) 4/264 NT 2.2% coding (31/1230 nt) yqeG putative transporter
?NC_000913 = 2985881 186 (1.140)coding (35/1230 nt) yqeG putative transporter
Rejected: Frequency below/above cutoff threshold.

CGTAAGGTTTGCAACCACTAACCCACCAATAGAGGGGTAGATAGGGCGTTAATCTCCCATACTTAACCTGGTTTATGGTAAATTGCCCTCCATTTTGTTTAATTTGTAGATGATACGTTCAGATAATGTCTAATATTTGGTCTAAAGAAGAAACTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2985722‑2985877
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaactcCACAGAGTTTCTTCTTTAGACCAAATATTAGACATTATCTGAACGTATCATCTACAAATTAAACAAAATGGAGGGCAATTTACCATAAACCAGGTTAAGTATGGGAGATTAACGCCCTATCTACCCCTCTATTGGTGGGTTAGTGGTTG  <  NC_000913/2985881‑2985733
                                                                                                                                                                                                                                                                                                                 
CGTAAGGTTTGCAACCACTAACCCACCAATAGAGGGGTAGATAGGGCGTTAATCTCCCATACTTAACCTGGTTTATGGTAAATTGCCCTCCATTTTGTTTAATTTGTAGATGATACGTTCAGAGAATGTCTAATATTTGGTCTAAAGAAG                                                                                                                                                             >  2:2316173/1‑150
 GTAAGGTTTGCAACCACTAACCCACCAATAGTGGGGTAGATAGGGCGTTAATCTCCCATACTTAACCTGGTTTATGGTAAATTGCCCTCCATTTTGTTTAATTTGTAGATGATACTTTCAGATAATGTCTAATATTTGGTCTAAAGAAGA                                                                                                                                                            <  1:1171612/150‑1
 GTAAGGTTTGCAACCACTAACCCACCAATAGAGGGGTAGATAGGGCGTTAATCTCCCATACTTAACCTGGTTTATGGTAAATTGCCCTCCATTTTGTTTAATTTGTAGATGATACGTTCAGATAATGTCTAATATTTGGTCTAAAGAAGA                                                                                                                                                            <  1:1510016/150‑1
 GTAAGGTTTGCAACCACTAACCCACCAATAGAGGGGTAGATAGGGCGTTAATCTCCCATACTTAACCTGGTTTATGGTAAATTGCCCTCCATTTTGTTTAATTTGTAGATGATACGTTCAGATAATGTCTAATATTTGGTCTAAAGAAGA                                                                                                                                                            <  1:965555/150‑1
 GTAAGGTTTGCAACCACTAACCCACCAATAGAGGGGTAGATAGGGCGTTAATCTCCCATACTTAACCTGGTTTATGGTAAATTGCCCTCCATTTTGTTTAATTTGTAGATGATACGTTCAGATAATGTCTAATATTTGGTCTAAAGAAGA                                                                                                                                                            >  2:189874/1‑150
   AAGGTTTGCAACCACTAACCCACCAATAGAGGGGTAGATAGGGCGTTAATCTCCCATACTTAACCTGGTTTATGGTAAATTGCCCTCCATTTTGTTTAATTTGTAGATGATACGTTCAGATAATGTCTAATATTTGGTCTAAAGAAGAAA                                                                                                                                                          <  1:1977081/150‑1
   AAGGTTTGCAACCACTAACCCACCAATAGAGGGGTAGATAGGGCGTTAATCTCCCATACTTAACCTGGTTTATGGTAAATTGCCCTCCATTTTGTTTAATTTGTAGATGATACGTTCAGATAATGTCTAATATTTGGTCTAAAGAAGAAA                                                                                                                                                          <  1:2145240/150‑1
   AAGGTTTGCAACCACTAACCCACCAATAGAGGGGTAGATAGGGCGTTAATCTCCCATACTTAACCTGGTTTATGGTAAATTGCCCTCCATTTTGTTTAATTTGTAGATGATACGTTCAGATAATGTCTAATATTTGGTCTAAAGAAGAAA                                                                                                                                                          >  1:2148706/1‑150
      GTTTGCAACCACTAACCCACCAATAGAGGGGTAGATAGGGCGTTAATCTCCCATACTTAACCTGGTTTATGGTAAATTGCCCTCCATTTTGTTTAATTTGTAGATGATACGTTCAGATAATGTCTAATATTTGGTCTAAAGAAGAAACTC                                                                                                                                                       >  1:341555/1‑150
      GTTTGCAACCACTAACCCACCAATAGAGGGGTAGATAGGGCGTTAATCTCCCATACTTAACCTGGTTTATGGTAAATTGCCCTCCATTTTGTTTAATTTGTAGATGATACGTTCAGATAATGTCTAATATTTGGTCTAAAGAAGAAACTC                                                                                                                                                       >  1:534114/1‑150
      GTTTGCAACCACTAACCCACCAATAGAGGGGTAGATAGGGCGTTAATCTCCCATACTTAACCTGGTTTATGGTAAATTGCCCTCCATTTTGTTTAATTTGTAGATGATACGTTCAGATAATGTCTAATATTTGGTCTAAAGAAGAAACTC                                                                                                                                                       >  1:2364667/1‑150
      GTTTGCAACCACTAACCCACCAATAGAGGGGTAGATAGGGCGTTAATCTCCCATACTTAACCTGGTTTATGGTAAATTGCCCTCCATTTTGTTTAATTTGTAGATGATACGTTCAGATAATGTCTAATATTTGGTCTAAAGAAGAAACTC                                                                                                                                                       >  1:2022085/1‑150
      GTTTGCAACCACTAACCCACCAATAGAGGGGTAGATAGGGCGTTAATCTCCCATACTTAACCTGGTTTATGGTAAATTGCCCTCCATTTTGTTTAATTTGTAGATGATACGTTCAGATAATGTCTAATATTTGGTCTAAAGAAGAAACTC                                                                                                                                                       >  1:1796842/1‑150
      GTTTGCAACCACTAACCCACCAATAGAGGGGTAGATAGGGCGTTAATCTCCCATACTTAACCTGGTTTATGGTAAATTGCCCTCCATTTTGTTTAATTTGTAGATGATACGTTCAGATAATGTCTAATATTTGGTCTAAAGAAGAAACTC                                                                                                                                                       >  1:121827/1‑150
       TTTGCAACCACTAACCCACCAATAGAGGGGTAGATAGGGCGTTAATCTCCCATACTTAACCTGGTTTATGGTAAATTGCCCTCCATTTTGTTTAATTTGTAGATGAGACGTTCAGATAATGTCTAAGATTTGGTCTAAAGAAGAAACTCg                                                                                                                                                      >  2:2095692/1‑149
                 CTAACCCACCAATAGAGGGGTAGATAGGGCGTTAATCTCCCATACTTAACCTGGTTTATGGTAAATTGCCCTCCATTTTGTTTAATTTGTAGATGATACGTTCAGATAATGTCTAATATTTGGTCTAAAGAAGAAACTCCACAGAGTTTC                                                                                                                                            <  2:1446739/150‑1
                    ACCCACCAATAGCGGGGTAGATAGGGCGTTAATCTCCCATACTTAACCTGGTTTATGGTAAATTGCCCTCCATTTTGTTTAATTTGTAGATGATACGTTCAGATAATGTCTAATATTTGGTCTAAAGAAGAAACTCCACAGAGTTTCTTC                                                                                                                                         <  1:740849/150‑1
                                                                                                        TGTAGATGATACGTTCAGATAATGTCTAATATTTGGTCTAAAGAAGAAACTCCACAGAGTTTCTTCTT                                                                                                                                       >  2:91666/1‑68
                                                                                                        TGTAGATGATACGTTCAGATAATGTCTAATATTTGGTCTAAAGAAGAAACTCCACAGAGTTTCTTCTT                                                                                                                                       <  1:91666/68‑1
                                                                                                                                                     GAAACTCCACAGAGTTTCTTCTTTAGACCAAATATTAGACATTATCTGAACGTATCATCTACAAATTAAACAAAATGGAGGGCAATTTACCATAAACCAGGTTAAGTATGGGAGATTAACGCCCTATCTACCCCTCTATTGGTGGGTTAG        >  2:1938619/1‑150
                                                                                                                                                     GAAACTCCACAGAGTTTCTTCTTTAGACCAAATATTAGACATTATCTGAACGTATCATCTACAAATTAAACAAAATGGAGGGCAATTTACCATAAACCAGGTTAAGTATGGGAGATTAACGCCCTATCTACCCCTCTATTGGTGGGTTAG        <  2:1597696/150‑1
                                                                                                                                                     GAAACTCCACAGAGTTTCTTCTTTAGACCAAATATTAGACATTATCTGAACGTATCATCTACAAATTAAACAAAATGGAGGGCAATTTACCATAAACCAGGTTAAGTATGGGAGATTAACGCCCTATCTACCCCTCTATTGGTGGGTTAG        >  2:1462144/1‑150
                                                                                                                                                     GAAACTCCACAGAGTTTCTTCTTTAGACCAAATATTAGACATTATCTGAACGTATCATCTACAAATTAAACAAAATGGAGGGCAATTTACCATAAACCAGGTTAAGTATGGGAGATTAACGCCCTATCTACCCCTCTATTGGTGGGTTAG        <  2:1044633/150‑1
                                                                                                                                                     GAAACTCCACAGAGTTTCTTCTTTAGACCAAATATTAGACATTATCTGAACGTATCATCTACAAATTAAACAAAATGGAGGGCAATTTACCATAAACCAGGTTAAGTATGGGAGATTAACGCCCTATCTACCCCTCTATTGGTGGGTTAG        >  2:2537137/1‑150
                                                                                                                                                     GAAACTCCACAGAGTTTCTTCTTTAGACCAAATATTAGACATTATCTGAACGTATCATCTACAAATTAAACAAAATGGAGGGCAATTTACCATAAACCAGGTTAAGTATGGGAGATTAACGCCCTATCTACCCCTCTATTGGTGGGTTAG        >  2:540941/1‑150
                                                                                                                                                      AAACTCCACAGAGTTTCTTCTTTAGACCAAATATTAGACATTATCTGAACGTATCATCTACAAATTAAACAAAATGGAGGGCAATTTACCATAAACCAGGTTAAGTATGGGAGATTAACGCCCTATCTACCCCTCTATTGGTGGGTTAGT       <  2:675438/150‑1
                                                                                                                                                         CTCCACAGAGTTTCTTCTTTAGACCAAATATTAGACATTATCTGAACGTATCATCTACAAATTAAACAAAATGGAGGGCAATTTACCATAAACCAGGTTAAGTATGGGAGATTAACGCCCTATCTACCCCTCTATTGGTGGGTTAGTGGT    >  2:2105678/1‑150
                                                                                                                                                         CTCCACAGAGTTTCTTCTTTAGACCAAATATTAGACATTATCTGAACGTATCATCTACAAATTAAACAAAATGGAGGGCAATTTACCATAAACCAGGTTAAGTATGGGAGATTAACGCCCTATCTACCCCTCTATTGGTGGGTTAGTGGT    >  2:937088/1‑150
                                                                                                                                                         CTCCACAGAGTTTCTTCTTTAGACCAAATATTAGACATTATCTGAACGTATCATCTACAAATTAAACAAAATGGAGGGCAATTTACCATAAACCAGGTTAAGTATGGGAGATTAACGCCCTATCTACCCCTCTATTGGTGGGTTAGTGGT    >  2:1432148/1‑150
                                                                                                                                                          TCCACAGAGTTTCTTCTTTAGACCAAATATTAGACATTATCTGAACGTATCATCTACAAATTAAACAAAATGGAGGGCAATTTACCATAAACCAGGTTAAGTATGGGAGATTAACGCCCTATCTACCCCTCTATTGGTGGGTTAGTGGTT   <  1:2122624/150‑1
                                                                                                                                                          TCCACAGAGTTTCTTCTTTAGACCAAATATTAGACAGGATCTGAACGTATCATCTACAAATTAAACACAATGGAGGGCAATTTACCATAAACCAGGTTAAGTATGGGAGATTAACGCCCTATCTACCCCTCTATTGGTGGGTTAGTGGTT   <  1:773311/150‑1
                                                                                                                                                           CCACAGAGTTTCTTCTTTAGACCAAATATTAGACATTATCTGAACGTATCATCTACAAATTAAACAAAATGGAGGGCAATTTACCATAAACCAGGTTAAGTATGGGAGATTAACGCCCTATCTACCCCTCTATTGGTGGGTTAGTGGTTG  <  2:1956827/150‑1
                                                                                                                                                           CCACAGAGTTTCTTCTTTAGACCAAATATTAGACATTATCTGAACGTATCATCTACAAATTAAACAAAATGGAGGGCAATTTACCATAAACCAGGTTAAGTATGGGAGATTAACGCCCTATCTACCCCTCTATTGGTGGGTTAGTGGTTG  <  2:122053/150‑1
                                                                                                                                                           CCACAGAGTTTCTTCTTTAGACCAAATATTAGACATTATCTGAACGTATCATCTACAAATTAAACAAAATGGAGGGCAATTTACCATAAACCAGGTTAAGTATGGGAGATTAACGCCCTATCTACCCCTCTATTGGTGGGTTAGTGGTTG  <  2:1041995/150‑1
                                                                                                                                                           CCACAGAGTTTCTTCTTTAGACCAAATATTAGACATTATCTGAACGTATCATCTACAAATTAAACAAAATGGAGGGCAATTTACCATAAACCAGGTTAAGTATGGGAGATTAACGCCCTATCTACCCCTCTATTGGTGGGTTAGTGGTTG  <  2:2715547/150‑1
                                                                                                                                                           CCACAGAGTTTCTTCTTTAGACCAAATATTAGACATTATCTGAACGTATCATCTACAAATTAAACAAAATGGAGGGCAATTTACCATAAACCAGGTTAAGTATGGGAGATTAACGCCCTATCTACCCCTCTATTGGTGGGTTAGTGGTTG  <  1:926070/150‑1
                                                                                                                                                           CCACAGAGTTTCTTCTTTAGACCAAATATTAGACATTATCTGAACGTATCATCTACAAATTAAACAAAATGGAGGGCAATTTACCATAAACCAGGTTAAGTATGGGAGATTAACGCCCTAACTACCCCTCGATTGGTGGGTTAGTGGTTG  >  1:982945/1‑150
                                                                                                                                                           CCACAGAGTTTCTTCTTTAGACCAAATAATAGACATTATCTGAACGTAACATCTACAAATTAAACAAAATGGAGGGCAATTTACCATAAACCAGGTTAAGTATGGGAGATTAACGCCCTATCTACCCCTCTATTGGTGGGTTAGTGGTTG  <  1:1022125/150‑1
                                                                                                                                                                                                                                                                                                                 
CGTAAGGTTTGCAACCACTAACCCACCAATAGAGGGGTAGATAGGGCGTTAATCTCCCATACTTAACCTGGTTTATGGTAAATTGCCCTCCATTTTGTTTAATTTGTAGATGATACGTTCAGATAATGTCTAATATTTGGTCTAAAGAAGAAACTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2985722‑2985877
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaactcCACAGAGTTTCTTCTTTAGACCAAATATTAGACATTATCTGAACGTATCATCTACAAATTAAACAAAATGGAGGGCAATTTACCATAAACCAGGTTAAGTATGGGAGATTAACGCCCTATCTACCCCTCTATTGGTGGGTTAGTGGTTG  <  NC_000913/2985881‑2985733

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.