New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4434547	198 (1.150)	5 (0.030)	4/264	NT	2.6%	noncoding (52/111 nt)	REP334 (repetitive extragenic palindromic) element; contains 3 REP sequences	REP334 (repetitive extragenic palindromic) element; contains 3 REP sequences
	?	NC_000913	= 4434565	NA (NA)					noncoding (70/111 nt)	REP334 (repetitive extragenic palindromic) element; contains 3 REP sequences	REP334 (repetitive extragenic palindromic) element; contains 3 REP sequences
Rejected: Frequency below/above cutoff threshold.

CGCTGGGCGAGCAGGTGAGCGAAAAGGTTGCTGCACTGGCGGACTGGATTGAGTTGAATTTGCCCGAGGTGTTGGCGGTGCGGGATGAACGTGCGGCATAACTGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4434393‑4434547 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggatGCGATGCTGGCGCATCTTATCCGCCCTACAAGCCATGCACCGTAGACCAGATAAGCTCAGCGCATCCGGCAGTTATGCCGCACGTTCATCCCGCACCGCCAACACCTCGGGCAAATTCAACTCAATCCAGTCCGCCAGTGCAGCAAC  <  NC_000913/4434565‑4434419                                                                                                                                                                                                                                                                                                                CGCTGGGCGAGCAGGTGAGCGAAAAGGTTGCTGCACTGGCGGACTGGATTGAGTTGAATTTGCCCGAGGTGTTGGCGGTGCGGGATGAACGTGCGGCATAACTGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGG                                                                                                                                                          <  1:1395150/150‑1   CTGGGCGAGCAGGTGAGCGAAAAGGTTGCTGCACTGGCGGACTGGATTGAGTTGAATTTGCCCGAGGTGTTGGCGGTGCGGGATGAACGTGCGGCATAACTGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCG                                                                                                                                                        <  2:1695066/150‑1                         AGGTTGCTGCACTGGCGGACTGGATTGAGTTGAATTTGCCCGAGGTGTTGGCGGTGCGGGATGAACGTGCGGCATAACTGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATGCGATGCTGGCGCATCTTA                                                                                                                                  <  1:1480171/150‑1                               CTGCACTGGCGGACTGGATTGAGTTGAATTTGCCCGAGGTGTTGGCGGTGCGGGATGAACGTGCGGCATAACTGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATGCGATGCTGGCGCATCTTATCCGCC                                                                                                                            <  2:2551141/150‑1                                                             TGCCCGAGGTGTTGGCGGTGCGGGATGAACGTGCGGCATAACTGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATGCGATGCTGGCGCATCTTATCCGCCCTACAAGCCATGCACCGTAGACCAGATAAG                                                                                              <  2:225214/150‑1                                                             TGCCCGAGGTGGTGGCGGTGCGGGATGAACGTGCGGCATAACTGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATGCGATGCTGGCGCATCTTATCCGCCCTACAAGCCATGCACCGTAGACCAGATAAG                                                                                              <  2:579140/150‑1                                                                  GAGGTGTTGGCGGTGCGGGATGAACGTGCGGCATAACTGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATGCGATGCTGGCGCATCTTATCCGCCCTACAAGCCATGCACCGTAGACCAGATAAGCTCAG                                                                                         <  2:2396142/150‑1                                                                                                                                                     GGCGGATGCGATGCTGGCGCATCTTATCCGCCCTACAAGCCATGCACCGTAGACCAGATAAGCTCAGCGCATCCGGCAGTTATGCCGCACGTTCATCCCGCACCGCCAACACCTCGGGCAAATTCAACTCAATCCAGTCCGCCAGTGCAG      <  1:2814582/150‑1                                                                                                                                                     GGCGGATGCGATGCTGGCGCATCTTATCCGCCCTACAAGCCATGCACCGTAGACCAGATAAGCTCAGCGCATCCGGCAGTTATGCCGCACGTTCATCCCGCACCGCCAACACCTCGGGCAAATTCAACTCAATCCAGTCCGCCAGTGCAG      <  2:246780/150‑1                                                                                                                                                      GCGGATGCGATGCTGGCGCATCTTATCCGCCCTACAAGCCATGCACCGTAGACCAGATAAGCTCAGCGCATCCGGCAGTTATGCCGCACGTTCATCCCGCACCGCCAACACCTCGGGCAAATTCAACTCAATCCAGTCCGCCAGTGCAGC     <  1:2348821/150‑1                                                                                                                                                      GCGGATGCGATGCTGGCGCATCTTATCCGCCCTACAAGCCATGCACCGTAGACCAGATAAGCTCAGCGCATCCGGCAGTTATGCCGCACGTTCATCCCGCACCGCCAACACCTCGGGCAAATTCAACTCAATCCAGTCCGCCAGTGCAGC     <  1:2824462/150‑1                                                                                                                                                      GCGGATGCGATGCTGGCGCATCTTATCCGCCCTACAAGCCATGCACCGTAGACCAGATAAGCTCAGCGCATCCGGCAGTTATGCCGCACGTTCATCCCGCACCGCCAACACCTCGGGCAAATTCAACTCAATCCAGTCCGCCAGTGCAGC     <  1:2824465/150‑1                                                                                                                                                      GCGGATGCGATGCTGGCGCATCTTATCCGCCCTACAAGCCATGCACCGTAGACCAGATAAGCTCAGCGCATCCGGCAGTTATGCCGCACGTTCATCCCGCACCGCCAACACCTCGGGCAAATTCAACTCAATCCAGTCCGCCAGTGCAGC     >  2:2276352/1‑150                                                                                                                                                      GCGGATGCGATGCTGGCGCATCTTATCCGCCCTACAAGCCATGCACCGTAGACCAGATAAGCTCAGCGCATCCGGCAGTTATGCCGCACGTTCATCCCGCACCGCCAACACCTCGGGCAAATTCAACTCAAACCAGTCCGCCAGTGCAGC     >  1:1723148/1‑150                                                                                                                                                      GCGGATGCGATGCTGGCGCATCTTATCCGCCCAACAAGCCATGCACCGTAGACCAGATAAGCTCAGCGCATCCGGCAGTTATGCCGCACGTTCATCCCGCACCGCCAACACCTCGGGCAAATTCAACTCAATCCAGTCCGCCAGAGCAGC     >  1:620357/1‑150                                                                                                                                                         GATGCGATGCTGGCGCATCTTATCCGCCCTACAAGCCATGCACCGTAGACCAGATAAGCTCAGCGCATCCGGCAGTTATGCCGCACGTTCATCCCACACCGCCAACACCTCGGGCAAATTCAACTCAATCCAGTCCGCCAGTGCAGCAAC  <  2:1470725/150‑1                                                                                                                                                                                                                                                                                                                CGCTGGGCGAGCAGGTGAGCGAAAAGGTTGCTGCACTGGCGGACTGGATTGAGTTGAATTTGCCCGAGGTGTTGGCGGTGCGGGATGAACGTGCGGCATAACTGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4434393‑4434547 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggatGCGATGCTGGCGCATCTTATCCGCCCTACAAGCCATGCACCGTAGACCAGATAAGCTCAGCGCATCCGGCAGTTATGCCGCACGTTCATCCCGCACCGCCAACACCTCGGGCAAATTCAACTCAATCCAGTCCGCCAGTGCAGCAAC  <  NC_000913/4434565‑4434419

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.