New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4562615 =	106 (1.070)	4 (0.040)	3/262	NT	3.8%	coding (61/1179 nt)	yjiJ	DUF1228 family putative inner membrane MFS superfamily transporter
	?	NC_000913	4562662 =	103 (1.100)					coding (14/1179 nt)	yjiJ	DUF1228 family putative inner membrane MFS superfamily transporter
Rejected: Frequency below/above cutoff threshold.

ATCGCTTTACCCCTCAATCATCGCATTAACAGGCTGGCATGCTTCACCTTTTTGTTATTAACTTGTTAACAACAAAAATGACAAACAAGGTTAAACATGCCTTCGTCCACGCATCCCGTAGAACGCTTTTCTTTCAGCACCGCGCTTTTCGGGATGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4562771‑4562615 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggatgcGTGGACGAAGGCATGTTTAACCTTGTTTGTCATTTTTGTTGTTAACAAGTTAATAACAAAAAGGTGAAGCATGCCAGCCTGTTAATGCGATGATTGAGGGGTAAAGCGATAAAAACGATTTGGTTCGCTAACGATATAAATATTACC  >  NC_000913/4562662‑4562808                                                                                                                                                                                                                                                                                                                  ATCGCTTTACCCCTCAATCATCGCATAAACAGGCTGCCATGCTTCACCTTTTTTTTATTAACTTGTTAACAACAAAAATGACAAAAAAGGTTAAACATGCCTTCGTCCACGCATCCCGTAGAACGCTTTTCTTTCAGCACCGCGCTTTTC                                                                                                                                                            <  1:84653/150‑1  TCGCTTTACCCCTCAATCATCGCATTAACAGGCTGGCATGCTTCACCTTTTTGTTATTAACTTGTTAACAACAAAAATGACAAACAAGGTTAAACATGCCTTCGTCCACGCATCCCGTAGAACGCTTTTCTTTCAGCACCGCGCTTTTCG                                                                                                                                                           >  2:371973/1‑150  TCGCTTTACCCCTCAATCATCGCATTAACAGGCTGGCATGCTTCACCTTTTTGTTATTAACTTGTTAACAACAAAAATGACAAACAAGGTTAAACATGCCTTCGTCCACGCATCCCGTAGAACGCTTTTCTTTCAGCACCGCGCTTTTCG                                                                                                                                                           >  2:527474/1‑150   CGCTTTACCCCTCAATCATCGCATTAACAGGCTGGCATGCTTCACCTTTTTGTTATTAACTTGTTAACAACAAAAATGACAAACAAGGTTAAACATGCCTTCGTCCACGCATCCCGTAGAACGCTTTTCTTTCAGCACCGCGCTTTTCGG                                                                                                                                                          <  1:899203/150‑1   CGCTTTACCCCTCAATCATCGCATTAACAGGCTGGCATGCTTCACCTTTTTGTTATTAACTTGTTAACAACAAAAATGACAAACAAGGTTAAACATGCCTTCGTCCACGCATCCCGTAGAACGCTTTTCTTTCAGCACCGCGCTTTTCGG                                                                                                                                                          >  2:1446650/1‑150    GCTTTACCCCTCAATCATCGCATTAACAGGCTGGCATGCTTCACCTTTTTGTTATTAACTTGTTAACAACAAAAATGACAAACAAGGTTAAACATGCCTTCGTCCACGCATCCCGTAGAACGCTTTTCTTTCAGCACCGCGGTTTTCGGG                                                                                                                                                         >  2:1048034/1‑150        TACCCCTCAATCATCGCATTAACAGGCTGGCATGCTTCACCTTTTTGTTATTAACTTGTTAACAACAAAAATGACAAACAAGGTTAAACATGCCTTCGTCCACGCATCCCGTAGAACGCTTTTCTTTCAGCACCGCGCTTTTCGGGATGC                                                                                                                                                     >  2:470055/1‑150                                                                                                            CACGCATCCCGTAGAACGCTTTTCTTTCAGCACCGCGCTTTTCGGGATGCGTGGACGAAGGCATGTTTAACCTTGTTTGTCATTTTTGTTGTTAACAAGTTAATAACAAAAAGGTGAAGCATGCCAGCCTGTTAATGCGATGATTGAGGG                                                 >  1:1430191/1‑150                                                                                                            CACGCATCCCGTAGAACGCTTTTCTTTCAGCACCGCGCTTTTCGGGATGCGTGGACGAAGGCATGTTTAACCTTGTTTGTCATTTTTGTTGTTAACAAGTTAATAACAAAAAGGTGAAGCATGACAGCCTGTTAATGCGATGATTGAGGG                                                 >  1:78641/1‑150                                                                                                             ACGCATCCCGTAGAACGCTTTTCTTTCAGCACCGCGCTTTTCGGGATGCGTGGACGAAGGCATGTTTAACCTTGTTTGTCATTTTTGTTGTTAACAAGTTAATAACAAAAAGGTGAAGCATGCCAGCCTGTTAATGCGATGATTGAGGGG                                                >  2:1710041/1‑150                                                                                                                CATCCCGTAGAACGCTTTTCTTTCAGCACCGCGCTTTTCGGGATGCGTGGACGAAGGCATGTTTAACCTTGTTTGTCATTTTTGTTGTTAACAAGTTAATAACAAAAAGGTGAAGCATGCCAGCCTGTTAATGCGATGATTGAGGGGTAA                                             >  1:1352309/1‑150                                                                                                                                                          ATGCGTGGACGAAGGCATGTTTAACCTTGTTTGTCATTTTTGTTGTTAAAAACTTAATAACAAAAAGGTGAAGCATGACAGCATGTTAATGCGATGATTGAGCCGTAAAGCGATAAAAACGATTTGGTTCGCTAAAGATATAAATATTAC   >  1:1245236/1‑150                                                                                                                                                           TGCGTGGACGAAGGCATGTTTAACCTTGTTTGTCATTTTTGTTGTTAACAAGTTAATAACAAAAAGGTGAAGCATGCCAGCCTGTTAATGCGATGATTGAGGGGTAAAGCGATAAAAACGATTTGGTTCGCTAACGATATAAATATTACC  <  1:1243203/150‑1                                                                                                                                                           TGCGTGGACGAAGGCATGTTTAACCTTGTTTGTCATTTTTGTTGTTAACAAGTTAATAACAAAAAGGTGAAGCATGCCAGCCTGTTAATGCGATGATTGAGGGGTAAAGCGATAAAAACGATTTGGTTCGCTAACGATATAAATATTACC  <  1:1456991/150‑1                                                                                                                                                           TGCGTGGACGAAGGCATGTTTAACCTTGTTTGTCATTTTTGTTGTTAACAAGTTAATAACAAAAAGGTGAAGCAAGCCAGCCTGTTAATGCGATGATTGAGGGGTAAAGCGATAAAAACGATTTGGTTCGCTAACGATATAAATATTACC  <  1:347538/150‑1                                                                                                                                                                                                                                                                                                                  ATCGCTTTACCCCTCAATCATCGCATTAACAGGCTGGCATGCTTCACCTTTTTGTTATTAACTTGTTAACAACAAAAATGACAAACAAGGTTAAACATGCCTTCGTCCACGCATCCCGTAGAACGCTTTTCTTTCAGCACCGCGCTTTTCGGGATGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4562771‑4562615 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggatgcGTGGACGAAGGCATGTTTAACCTTGTTTGTCATTTTTGTTGTTAACAAGTTAATAACAAAAAGGTGAAGCATGCCAGCCTGTTAATGCGATGATTGAGGGGTAAAGCGATAAAAACGATTTGGTTCGCTAACGATATAAATATTACC  >  NC_000913/4562662‑4562808

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.