| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4636531 = | 103 (1.040) | 4 (0.040) | 3/256 | NT | 4.4% | coding (525/690 nt) | creB | response regulator in two‑component regulatory system with CreC |
| ? | NC_000913 | 4636847 = | 80 (0.880) | coding (152/1425 nt) | creC | sensory histidine kinase in two‑component regulatory system with CreB or PhoB | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GCCCCTCAGGCTATATCCCATGCCGCGATGAGTATTAATCGGTGAAAGATCGGGGTTGATGGCGCGCAGCTTGGCACGCAGCGTTTTAATGTGGGTATCGACGGTGCGATCGTAGGTGTCCTGCGCATCTTCCCATACGCTATCCATCAGTTGCTGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4636690‑4636531‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttgctggcggAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATGACCGATGCG > NC_000913/4636847‑4636995 GCCCCTCAGGCTATATCCCATGCCGCGATGAGTATTAATCGGTGAAAGATCGGGGTTGATGGCGCGCAGCTTGGCACGCAGCGTTTTAATGTGGGTATCGACGGTGCGATCGTAGGTGTCCTGCGCATCTTCCCATACGCTATCCATCAG > 2:89246/1‑150 CCCCTCAGGCTATATCCCATGCCGCGATGAGTATTAATCGGTGAAAGATCGGGGTTGATGGCGCGCAGCTTGGCACGCAGCGTTTTAATGTGGGTATCGACGGTGCGATCGTAGGTGTCCTGCGCATCTTCCCATACGCTATCCATCAGT < 2:795838/150‑1 CCCTCAGGCTATATCCCATGCCGCGATGAGTATTAATCGGTGAAAGATCGGGGTTGATGGCGCGCAGCTTGGCACGCAGCGTTTTAATGTGGGTATCGACGGTGCGATCGTAGGTGTCCTGCGCATCTTCCCATACGCTATCCATCAGTT < 1:1387341/150‑1 CCTCAGGCTATATCCCATGCCGCGATGAGTATTAATCGGTGAAAGATCGGGGTTGATGGCGCGCAGCTTGGCACGCAGCGTTTTAATGTGGGTATCGACGGTGCGATCGTAGGTGTCCTGCGCATCTTCCCATACGCTATCCATCAGTTG > 1:1311248/1‑150 CCTCAGGCTATATCCCATGCCGCGATGAGTATTAATCGGTGAAAGATCGGGGTTGATGGCGCGCAGCTTGGCACGCAGCGTTTTAATGTGGGTATCGACGGTGCGATCGTAGGTGTCCTGCGCATCTTCCCATACGCTATCCATCAGTTG > 2:1405354/1‑150 TCAGGCTATATCCCATGCCGCGATGAGTATTAATCGGTGAAAGATCGGGGGTGATGGCGCGCAGCTTGGCACGCAGCGTTTTAATGTGGGTATCGACGGTGCGATCGTAGGTGTCCTGCGCATCTTCCCATACGCTATCCATCAGTTGCT < 1:837739/150‑1 CAGGCTATATCCCATGCCGCGATGAGTATTAATCGGTGAAAGATCGGGGTTGATGGCGCGCAGCTTGGCACGCAGCGTTTTAATGTGGGTATCGACGGTGCGATCGTAGGTGTCCTGCGCATCTTCCCCTACGCTATCCATCAGTTGCTG > 2:39253/1‑150 CAGGCTATATCCCATGCCGCGATGAGTATTAATCGGTGAAAGATCGGGGTTGATGGCGCGCAGCTTGGCACGCAGCGTTTTAATGTGGGTATCGACGGTGCGATCGTAGGTGTCCTGCGCATCTTCCCATACGCTATCCATCAGTTGCTG > 2:1029356/1‑150 GGCTATATCCCATGCCGCGATGAGTATTAATCGGTGAAAGATCGGGGTTGATGGCGCGCAGCTTGGCACGCAGCGTTTTAATGTGGGTATCGACGGTGCGATCGTAGGTGTCCTGCGCATCTTCCCATACGCTATCCATCAGTTG < 1:282912/145‑1 GGCTATATCCCATGCCGCGATGAGTATTAATCGGTGAAAGATCGGGGTTGATGGCGCGCAGCTTGGCACGCAGCGTTTTAATGTGGGTATCGACGGTGCGATCGTAGGTGTCCTGCGCATCTTCCCATACGCTATCCATCAGTTG > 2:282912/1‑145 CAGCTTGGCACGCAGCGTTTTAATGTGGGTATCGACGGTGCGATCGTAGGTGTCCTGCGCATCTTCCCATACGCTATCCATAAGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAG > 1:13969/1‑150 CAGCGTTTTAATGTGGGTATCGACGGTGCGATCGTAGGTGTCCTGCGCATCTTCCCATACGCTATCCATCAGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAG > 1:1231584/1‑150 ACGGTGCGATCGTAGGTGTCCTGCGCATCTTCCCATACGCTATCCATCAGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCG < 2:1231584/150‑1 ACGGTGCGATCGTAGGTGTCCTGCGCATCTTCCCATACGCTATCCATCAGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCG < 2:13969/150‑1 GTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATAT > 2:921681/1‑150 TTGCGGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATG < 1:1329615/150‑1 GGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATGACCGA < 2:1690435/150‑1 GAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATGACCGATGCG > 1:81787/1‑150 GCCCCTCAGGCTATATCCCATGCCGCGATGAGTATTAATCGGTGAAAGATCGGGGTTGATGGCGCGCAGCTTGGCACGCAGCGTTTTAATGTGGGTATCGACGGTGCGATCGTAGGTGTCCTGCGCATCTTCCCATACGCTATCCATCAGTTGCTGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4636690‑4636531‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttgctggcggAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATGACCGATGCG > NC_000913/4636847‑4636995 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |