New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | 3943544 = | 7 (0.070) | 3 (0.030) | 3/256 | NT | 14.5% | intergenic (+34/‑160) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon |
? | NC_000913 | 4209923 = | 29 (0.320) | intergenic (+74/‑120) | gltV/rrlE | tRNA‑Glu/23S ribosomal RNA of rrnE operon |
GGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCT > NC_000913/3943395‑3943692 | ggAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTa > 2:462739/1‑150 (MQ=31) ggAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTa < 1:774430/150‑1 (MQ=31) atccaccgtgtacgcttagtcgcttaacctcacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactctcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaa > 2:925528‑M1/150‑150 (MQ=255) tccaccgtgtacgcttagtcgcttaacctcacaacccgaagatgtttcttacgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagatcaaa < 1:793149‑M1/2‑1 (MQ=255) gAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTaa > 2:167091/1‑150 (MQ=11) gAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTaa > 2:739032/1‑150 (MQ=11) ccaccgtgtacgcttagtcgcttaacctcacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactctcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaAat < 1:1639531‑M1/3‑1 (MQ=255) ccaccgtgtacgcttagtcgcttaacctcacaacccgaagatgtttcttacgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaAat < 2:485751‑M1/3‑1 (MQ=255) ccaccgtgtacgcttagtcgcttaacctcacaacccgaagatgtttcttacgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaAat > 2:1234930‑M1/148‑150 (MQ=255) caccgtgtacgcttagtcgcttaacctcacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactctcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaAata < 2:836432‑M1/4‑1 (MQ=255) ccgtgtacgcttagtcgcttaacctcacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactctcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaAATAtc > 2:7901‑M1/145‑150 (MQ=255) ccgtgtacgcttagtcgcttaacctcacaacccgaagatgtttcttacgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaAATAtc < 1:770203‑M1/6‑1 (MQ=255) cgtgtacgcttagtcgcttaacctcacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactctcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaAATAtct > 2:676861‑M1/144‑150 (MQ=255) cgtgtacgcttagtcgcttaacctcacaacccgaagatgtttcttacgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaAATAtct > 2:451935‑M1/144‑150 (MQ=255) gtgtacgcttagtcgcttaacctcacaacccgaagatgtttctttcgattcatcatcgtgtttcgaaaatttgagagactcacgaacaactctcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaAATAtctc > 2:362750‑M1/143‑150 (MQ=255) gtgtacgcttagtcgcttaacctcacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactctcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaAATAtctc < 1:211787‑M1/8‑1 (MQ=255) tgtactcttagtcgcttaacctaacaacccgaagatgtttcttacgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaAATATCTCa > 1:486053‑M1/142‑150 (MQ=255) tgtacgcttagtcgcttaacctcacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactctcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaAATATCTCa > 1:35510‑M1/142‑150 (MQ=255) tgtacgcttagtcgcttaacctcacaacccgaagatgtttcttacgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaAATAACTCa < 2:397543‑M1/9‑1 (MQ=255) ttacgcttagtcgcttaaactcacaacccgaagatttttcttacgaatcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaAATATCTCaa > 1:279696‑M1/141‑150 (MQ=255) gtacgcttagtcgcttaacctcacaacccgaagatgtttcttacgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaAATATCTCaa > 2:183335‑M1/141‑150 (MQ=255) gtacgcttagtcgcttaacctcacaacccgaagatgtttcttacgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaAATATCTCaa > 2:1435466‑M1/141‑150 (MQ=255) gtacgctaagtcgcttaacctcacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactctcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaAATATCTCaa < 1:229476‑M1/10‑1 (MQ=255) tacgcttagtcgcttaacctcacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactctcgttgttcagtgtttcaattttcagcttgatccagattttaaaatagcaAATATCTCaaa < 1:261311‑M1/11‑1 (MQ=255) atgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactctcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGc > 2:979528‑M1/108‑150 (MQ=255) atgtttcttacgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaAATATCTCAAAACTCACCTTCGGGTGATGTTTGAGATATTTGc > 1:1409942‑M1/108‑150 (MQ=255) tgtttcttacgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGct > 1:1235108‑M1/107‑150 (MQ=255) gtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactctcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGctc > 1:641861‑M1/106‑150 (MQ=255) tttcttacgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGctct > 1:1544781‑M1/105‑150 (MQ=255) cgaacaactctcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTTAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGa < 2:1048559‑M1/90‑1 (MQ=255) gTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCga > 2:1609834/1‑150 (MQ=11) gTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCga > 2:1050739/1‑150 (MQ=11) cACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCTCAAAACGATGATGAATCgaaa > 2:226631/1‑150 (MQ=17) cACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCgaaa > 2:464878/1‑150 (MQ=32) aCCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCgaaag > 1:486271/1‑150 (MQ=32) tGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCgaaagaaa > 2:1357608/1‑150 (MQ=32) tGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCgaaaagaa > 1:1449112/1‑146 (MQ=17) gCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATAATTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAAc > 1:1118990/1‑150 (MQ=17) ccTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACa > 2:1046197/1‑150 (MQ=32) cTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACAt > 1:1706046/1‑150 (MQ=32) cTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACAt > 1:1418744/1‑150 (MQ=32) cTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACAt > 1:139614/1‑150 (MQ=32) tAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCt < 1:198155/150‑1 (MQ=32) | GGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCT > NC_000913/3943395‑3943692 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |