| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 2,881,595 | G→T | 6.2% | S183Y (TCC→TAC) ‡ | casC ← | CRISP RNA (crRNA) containing Cascade antiviral complex protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,881,595 | 0 | G | T | 6.2% | 353.5 / 6.9 | 112 | S183Y (TCC→TAC) ‡ | casC | CRISP RNA (crRNA) containing Cascade antiviral complex protein |
| Reads supporting (aligned to +/- strand): ref base G (46/58); new base T (2/5); total (49/63) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.97e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.57e-01 | |||||||||||
Only 100 of 115 total aligned reads displayed.
AGGTTAATGTTGGCATAACGATAAAAAACACCCGATGAAAATTCCTGAGTTCCCAGATGTGCAGAACCTTGTTCCTGTAAATCATCTACAGCGGTGAACCAGTCAATATCAGAATCAACCTGATGAGTAGTGATCGCATGCGCAATGGACATTGCACCATCAACTTTTCCCAACTCAGTCATCATGCCGCTGGTTGCCATTCTTCCACTAAGCGCAATATCAACACCCTGCTGTAAATTCACACGTATGGCGGCAATATCTTCCTTAAGAACTTTGAGCAGCTTTTTATCATCCAGA > NC_000913/2881448‑2881744 | aGGTTAATGTTGGCATAACGATAAAAAACACCCGATGAAAATTCCTGAGTTCCCAGATGTGCAGAACCTTGTTCCTGTAAATCATCTACAGCGGTGAACCAGTCAATATCAGAATCAACCTGATGAGTAGTGATCGCATGCGCAATGGAc > 1:660264/1‑150 (MQ=255) ggTTAATGTTGGCATAACGATAAAAAACACCCGATGAAAATTCCTGAGTTCCCAGATGTGCAGAACCTTGTTCCTGTAAATCATCTACAGCGGTGAACCAGTCAATATCAGAATCAACCTGATGAGTAGTGATCGCATGCGCAATGGACa > 2:1100532/1‑150 (MQ=255) tAATGTTGGCATAACGATAAAAAACACCCGATGAAAATTCCTGAGTTCCCAGATGTGCAGAACCTTGTTCCTGTAAATCATCTACAGCGGTGAACCAGTCAATATCAGAATCAACCTGATGAGTAGTGATCGCATGCGCAATGGACATTg > 2:64906/1‑150 (MQ=255) tGTTGGCATAACGATAAAAAACACCCGATGAAAATTCCTGAGTTCCCAGATGTGCAGAACCTTGTTCCTGTAAATCATCTACAGCGGTGAACCAGTCAATATCAGAATCAACCTGATGAGTAGTGATCGCATGCGCAATGGACATTGCAc < 1:25916/150‑1 (MQ=255) gTTGGCATAACGATAAAAAACACCCGATGAAAATTCCTGAGTTCCCAGATGTGCAGAACCTTGTTCCTGTAAATCATCTACAGCGGTGAACCAGTCAATATCAGAATCAACCTGATGAGTAGTGATCGCATGCGCAATGGACATTGCAcc < 1:534404/150‑1 (MQ=255) gCATAACGATAAAAAACACCCGATGAAAATTCCTGAGTTCCCAGATGTGCAGAACCTTGTTCCTGTAAATCATCTACAGCGGTGAACCAGTCAATATCAGAATCAACCTGATGAGTAGTGATCGCATGTGCAATGTCCATTGcgcatgcg < 1:634495/150‑8 (MQ=255) gCATAACGATAAAAAACACCCGATGAAAATTCCTGAGTTCCCAGATGTGCAGAACCTTGTTCCTGTAAATCATCTACAGCGGTGAACCAGTCAATATCAGAATCAACCTGATGAGTAGTGATCGCATGTGCAATGTCCATTGcgcatgcg < 1:1235116/150‑8 (MQ=255) gCATAACGATAAAAAACACCCGATGAAAATTCCTGAGTTCCCAGATGTGCAGAACCTTGTTCCTGTAAATCATCTACAGCGGTGAACCAGTCAATATCAGAATCAACCTGATGAGTAGTGATCGCATGCGCAATGTCCATTGcgcatgcg < 2:156675/150‑8 (MQ=255) aCGATAAAAAACACCCGATGAAAATTCCTGAGTTCCCAGATGTGCAGAACCTTGTTCCTGTAAATCATCTACAGCGGTGAACCAGTCAATATCAGAATCAACCTGATGAGTAGTGATCGCATGCGCAATGTCCATTGcgcatg > 2:1203071/1‑138 (MQ=255) gATAAAAAACACCCGATGAAAATTCCTGAGTTCCCAGATGTGCAGAACCTTGTTCCTGTAAATCATCTACAGCGGTGAACCAGTCAATATCAGAATCAACCTGATGAGTAGTGATCGCATGCGCAATGGACATTGCACCATCAACTTTTc < 2:1573745/150‑1 (MQ=255) atatAAAACACCCGATGATAATTCCTGAGTTCCCAGATGTGCAGTACCTTGTTCCTGTAAATCATCTACAGCGGTGACCCAGTCAATATCAGAATCAACCTGATGAGTAGTTATCGCATGCGCTATGGACATTGCACAATCAACTTTTcc < 2:416129/150‑1 (MQ=255) tAAAAAACACCCGATGAAAATTCCTGAGTTCCCAGATGTGCAGAACCTTGTTCCTGTAAATCATCTACAGCGGTGAACCAGTCAATATCAGAATCAACCTGATGAGTAGTGATCGCATGCGCAATGGACATTGCACCATCAACTTTTccc < 2:1601233/150‑1 (MQ=255) tAAAAAACACCCGATGAAAATTCCTGAGTTCCCAGATGTGCAGAACCTTGTTCCTGTAAATCATCTACAGCGGTGAACCAGTCAATATCAGAATCAACCTGATGAGTAGTGATCGCATGCGCAATGGACATTGCACCATCAACTTTTccc < 1:1468766/150‑1 (MQ=255) aaaaaaCACCCGATGAAAATTCCTGAGTTCCCAGATGTGCAGAACCTTGTTCCTGTAAATCATCTACAGCGGTGAACCAGTCAATATCAGAATCAACCTGATGAGTAGTGATCGCATGCGCAATGGACATTGCACCATCAACTTTTCCCa < 2:980686/150‑1 (MQ=255) aaaaCACCCGATGAAAATTCCTGAGTTCCCAGATGTGCAGAACCTTGTTCCTGTAAATCATCTACAGCGGTGAACCAGTCAATATCAGAATCAACCTGATGAGTAGTGATCGCATGCGCAATGGACATTGCACCATCAACTTTTCCCAAc > 1:1257546/1‑150 (MQ=255) acacCCGATGAAAATTCCTGAGTTCCCAGATGTGCAGAACCTTGTTCCTGTAAATCATCTACAGCGGTGAACCAGTCAATATCAGAATCAACCTGATGAGTAGTGATCGCATGCGCAATGGACATTGCACCATCAACTTTTCCCAACTCa > 2:117030/1‑150 (MQ=255) cacCCGATGAAAATTCCTGAGTTCCCAGATGTGCAGAACCTTGTTCCTGTAAATCATCTACAGCGGTGAACCAGTCAATATCAGAATCAACCTGATGAGTAGTGATCGCATGCGCAATGGACATTGCGCCATCAACTTTTCCCAACTCAg < 2:1542998/150‑1 (MQ=255) acCCGATGAAAATTCCTGAGTTCCCAGATGTGCAGAACCTTGTTCCTGTAAATCATCTACAGCGGTGAACCAGTCAATATCAGAATCAACCTGATGAGTAGTGATCGCATGCGCAATGGACATTGCACCATCAACTTTTCCCACCTCAGt > 2:156477/1‑150 (MQ=255) cccGATGAAAATTCCTGAGTTCCCAGATGTGCAGAACCTTGTTCCTGTAAATCATCTACAGCGGTGAACCAGTCAATATCAGAATCAACCTGATGAGTAGTGATCGCATGCGCAATGGACATTGCACCATCAACTTTTCCCAACTCAGtc > 2:128479/1‑150 (MQ=255) cccGATGAAAATTCCTGAGTTCCCAGATGTGCAGAACCTTGTTCCTGTAAATCATCTACAGCGGTGAACCAGTCAATATCAGAATCAACCTGATGAGTAGTGATCGCATGCGCAATGGACATTGCACCATCAACTTTTCCCAACTCAGtc < 1:1633424/150‑1 (MQ=255) ccGATGAAAATTCCTGAGTTCCCAGATGTGCAGAACCTTGTTCCTGTAAATCATCTACAGCGGTGAACCAGTCAATATCATAATCAACCTGATGAGTAGTGATCGCATGCGCAATGGACATTGCACCATCAACTTTTCCCAACTCAGtca < 2:938488/150‑1 (MQ=255) ccGATGAAAATTCCTGAGTTCCCAGATGTGCAGAACCTTGTTCCTGTAAATCATCTAAAGCGGTGAACCAGTCAATATCAGACTCAACCTGATGAGTAGTGATCGCATGCGCAATGGACATTGCACCATCAACTTTTCCCAACTCAGtca < 2:932357/150‑1 (MQ=255) ccGATGAAAATTCCTGAGTTCCCAGATGTGCAGAACCTTGTACCTGTAAATCATCTACAGCGGTGAACCAGTCAATATCATAATCAACCTGATGAGTTGTGATCGCATGCGCAATGGACATTGCACCAGCAACTTTTCCCAACTCAGtca > 2:318095/1‑150 (MQ=255) cGATGAAAATTCCTGAGTTCCCAGATGTGCAGAACCTTGTTCCTGTAAATCATCTACAGCGGTGAACCAGTCAATATCAGAATCAACCTGATGAGTAGTGATCGCATGCGCAATGGACATTGCACCATCAACTTTTCCCAACTCAGtcat > 1:1186862/1‑150 (MQ=255) cGATGAAAATTCCTGAGTTCCCAGATGTGCAGAACCTTGTTCCTGTAAATCATCTACAGCGGTGAACCAGTCAATATCAGAATCAACCTGATGAGTAGTGATAACATGCGCAATGCACATATCACCATCAACATTTCCCAACTCAGtcat > 2:1044377/1‑150 (MQ=255) gATGAAAATTCCTGAGTTCCCAGATGTGCAGAACCTTGTTCCTGTAAATCATCTACAGCGGTGAACCAGTCAATATCAGAATCAACCTGATGAGTAGTGATCGCATGCGCAATGGACATTGCACCATCAACTTTTCCCAACTCAGtcatc > 2:322500/1‑150 (MQ=255) aTGAAAATTCCTGAGTTCCCAGATGTGCAGAACCTTGTTCCTGTAAATCATCTACAGCGGTGAACCAGTCAATATCAGAATCAACCTGATGAGTAGTGATCGCATGCGCAATGGACATTGCACCATCAACTTTTCCCAACTCAGtcatca < 1:343816/150‑1 (MQ=255) tGAAAATTCCTGAGTTCCCAGATGTGCAGAACCTTGTTCCTGTAAATCATCTACAGCGGTGAACCAGTCAATATCAGAATCAACCTGATGAGTAGTGATCGCATGCGCAATGGACATTGCACCATCAACTTTTCCCAACTCAGTcatcat > 1:159169/1‑150 (MQ=255) aaaTTCCTGAGTTCCCAGATGTGCAGAACCTTGTTCCTGTAAATCATCTACAGCGGTGAACCAGTCAATATCAGAATCAACCTGATGAGTAGTGATCGCATGCGCAATGGACATTGCACCATCAACTTTTCCCAACTCAGTCATCATGcc < 2:232126/150‑1 (MQ=255) aTTCCTGAGTTCCCAGATGTGCAGAACCTTGTTCCTGTAAATCATCTACAGCGGTGAACCAGTCAATATCAGAATCAACCTGATGAGTAGTGATCGCATGCGCAATGGACATTGCACCATCAACTTTTCCCAACTCAGTCATCATGCCGc > 2:1425517/1‑150 (MQ=255) aTTCCTGAGTT‑CCAGATGTGCAGAACCTTGTTACTGTAAATAATCTACCGCGGTGAACCAGTCAATATCAGAATCAACCTGATGAGTAGTGATCGCATGCGCAATGGACATTGCACCATCAACTTTTCCCAACTCAGTCATCATGCCGCt > 2:906573/1‑150 (MQ=255) cTGAGTTCCCAGATGTGCAGAACCTTGTTCCTGTAAATCATCTACAGCGGTGAACCAGTCAATATCAGAATCAACCTGATGAGTAGTGATCGCATGCGCAATGGACATTGCACCATCAACTTTTCCCAACTCAGTCATCATGCCGCTGGt < 2:1645711/150‑1 (MQ=255) tGAGTTCCCAGATGTGCAGAACCTTGTTCCTGTAAATCATCTACAGCGGTGAACCAGTCAATATCAGAATCAACCTGATGAGTAGTGATCGCATGCGCAATGGACATTGCACCATCAACTTTTCCCAACTCAGTCATCATGCCGCTGGtt > 1:676078/1‑150 (MQ=255) gTTCCCAGATGTGCAGAACCTTGTTCCTGTAAATCATCTACAGCGGTGAACCTGTCAATATCAGAATCAACCTGATGAGTAGTGATCGCATGCGCAATGGACATTGCACCATCAACTTTTCCCAACTCAGTCATCATGCCGCTGGTTGcc < 1:1592894/150‑1 (MQ=255) gTTCCCAGATGTGCAGAACCTTGTTCCTGTAAATCATCTACAGCGGTGAACCAGTCAATATCAGAATCAACCTGATGAGTAGTGATCGCATGCGCAATGGACATTGCACCATCAACTTTTCCCAACTCAGTCATCATGCCGCTGGTTGcc > 2:72603/1‑150 (MQ=255) ttCCCAGATGTGCAGAACCTTGTTCCTGTAAATCATCTACAGCGGTGAACCAGTCAATATCAGAATCAACCTGATGAGTAGTGATCGCATGCGCAATGGACATTGCACCATCAACTTTTCCCAACTCAGTCATCATGCCGCTGGTTGCCa < 2:660264/150‑1 (MQ=255) cAGATGTGCAGAACCTTGTTCCTGTAAATCATCTACAGCGGTGAACCAGTCAATATCAGAATCAACCTGATGAGTAGTGATCGCATGCGCAATGGACATTGCACCATCAACTTTTCCAAAGTCAGTCATCATGCCGCTGGTTGACCttct > 2:173676/1‑150 (MQ=255) tgCAGAACCTTGTTCCTGTAAATCATCTACAGCGGTGAACCAGTCAATATCAGAATCAACCTGATGAGTAGTGATCGCATGCGCAATGGACATTGCACCATCAACTTTTCCCAACTCAGTCATCATGCCGCTGGTTGCCATTCTTCCACt < 2:1186862/150‑1 (MQ=255) tgCAGAACCTTGTTCCTGTAAATCATCTACAGCGGTGAACCAGTCAATATCAGAATCAACCTGATGAGTAGTGATCGCATGCGCAATGGACATTGCACCATCAACTTTTCCCAACTCAGTCATCATGCCGCTGGTTGCCATTCTTCCACt > 1:1461982/1‑150 (MQ=255) gCAGAACCTTGTTCCTGTAAATCATCTACAGCGGTGAACCAGTCAATATCAGAATCAACCTGATGAGTAGTGATCGCATGCGCAATGGACATTGCACCATCATCTTTTCCCAACTCAGTCATCATGCCGCTGGTTGCCATTCTTCCACTa > 2:1332613/1‑150 (MQ=255) aGAACCTTGTTCCTGTAAATCATCTACAGCGGTGAACCAGTCAATATCAGAATCAACCTGATGAGTAGTGATCGCATGCGCAATGGACATTGCACCATCAACTTTTCCCAACTCAGTCATCATGCCGCTGGTTGCCATTCTTCCACTAAg > 2:1357489/1‑150 (MQ=255) aGAACCTTGTTCCTGTAAATCATCTACAGCGGTGAACCAGTCAATATCAGAATCAACCTGATGAGTAGTGATCGCATGCGCAATGGACATTGCACCATCAACTTTTCCCAACTCAGTCATCATGCCGCTGGTTGCCATTCTTCCACTAAg < 2:1110689/150‑1 (MQ=255) gAACCTTGTTCCTGTAAATCATCTACAGCGGTGAACCAGTCAATATCAGAATCAACCTGATGAGTAGTGATCGCATGCGCAATGGACATTGCACCATCAACTTTTCCCAACTCAGTCATCATGCCGCTGGTTGCCATTCTTCCACTAAgc > 1:697879/1‑150 (MQ=255) aCCTTGTTCCTGTAAATCATCTACAGCGGTGAACCAGTCAATATCAGAATCAACCTGATGAGTAGTGATCGCATGCGCAATGGACATTGCACCATCAACTTTTCCCAACTCAGTCATCATGCCGCTGGTTGCCATTCTTCCACTAAgcgc > 2:1402191/1‑150 (MQ=255) ccTTGTTCCTGTAAATCATCTACAGCGGTGAACCAGTCAATATCAGAATCAACCTGATGAGTAGTGATCGCATGCGCAATGGACATTGCACCATCAACTTTTCCCAACTCAGTCATCATGCCGCTGGTTGCCATTCTTCCACTAAGCGCa > 1:530197/1‑150 (MQ=255) ccTTGTTCCTGTAAATCATCTACAGCGGTGAACCAGTCAATATCAGAATCAACCTGATGAGTAGTGATCGCATGCGCAATGGACATTGCACCATCAACTTTTCCCAACTCAGTCATCATGCCGCTGGTTGCCATTCTTCCACTAAGCGCa > 1:1590202/1‑150 (MQ=255) cTTGTTCCTGTTAATCATCTACAGCGGTGAACCAGTCAATATCAGAATCAACCTGATGAGTAGTGATCGCATGCGCAATGGACATTGCACCATCAACTTTTCCCAACTCAGTCATCATGCCGCTGGTTGCCATTCTTCCACTAAGCGCaa < 1:212419/150‑1 (MQ=255) ttGTTCCTGTAAATCATCTACAGCGGTGAACCAGTCAATATCAGAATCAACCTGATGAGTAGTGATCGCATGCGCAATGGACATTGCACCATCAACTTTTCCCAACTCAGTCATCATGCCGCTGGTTGCCATTCTTCCACTAAGCGCAat < 1:737331/150‑1 (MQ=255) tGTTCCTGTAAATCATCTACAGCGGTGAACCAGTCAATATCAGAATCAACCTGATGAGTAGTGATCGCATGCGCAATGGACATTGCACCATCAACTTTTCCCAACTCAGTCATCATGCCGCTGGTTGCCATTCTTCCACTAAGCGCaaaa > 1:1214859/1‑148 (MQ=255) tttCCTGTAAATCATCTACATCGGTGATCCAGTGAATATCAGAATCAACCTGATGAGTTGTGATCGCATGCGCAATGGACATTGCACCATCAACTTTTCCCAACTCAGTCATCATGCCGCTGGTTGCCATTCTTCCACTAAGCGAAatat < 1:1247765/149‑1 (MQ=255) ttCCTGTAAATCATCTACAGCGGTGAACCAGTCAATATCAGAATCAACCTGATGAGTAGTGATCGCATGCGCAATGGACATTGCACCATCAACTTTTCCCAACTCAGTCATCATGCCGCTGGTTGCCATTCTTCCACTAAGCGCAATATc < 2:255066/150‑1 (MQ=255) ttCCTGTAAATCATCTACAGCGGTGAACCAGTCAATATCAGAATCAACCTGATGAGTAGTGATCGCATGCGCAATGGACATTGCACCATCAACTTTTCCCAACTCAGTCATCATGCCGCTGGTTGCCATTCTTCCACTAAGCGCAATATc < 2:87167/150‑1 (MQ=255) tCCTGTAAATCATCTACAGCGGTGAACCAGTCAATATCAGAATCAACCTGATGAGTAGTGATCGCATGCGCAATGGACATTGCACCATCAACATTTCCCAACTCAGTCATCATGCCGCTGGTTGCCATTCTTCCACTAAGCGCAATATCa < 1:150155/150‑1 (MQ=255) cTGTAAATCATCTACAGCGGTGCACCAGTCAATATCAGAATCAACCTGATGAGTAGTGATCGCATGCGCAATGGACATTGCACCATCAACTTTTCCCAACTCAGTCAGCATGCCGCTGGTTGCCATTCTTCCACGTCTCGCAATATCAac > 2:105000/1‑150 (MQ=255) atcatcTACAGCGGTGAACCAGTCAATATCAGAATCAACCTGATGAGTAGTGATCGCATGCGCTATGGACATTGCACCATCAACTTTTCCCAACTCAGTCATCATGCCGCTGGTTGCCATTCTTCCACTAAGCGCAATATCAACACCctg < 1:1433913/150‑1 (MQ=255) atcatcTACAGCGGTGAACCAGTCAATATCAGAATCAACCTGATGAGTAGTGATCGCATGCGCAATGGACATTGCACCATCAACTTTTCCCAACTCAGTCATCATGCCGCTGGTTGc < 2:1034975/117‑1 (MQ=255) atcatcTACAGCGGTGAACCAGTCAATATCAGAATCAACCTGATGAGTAGTGATCGCATGCGCAATGGACATTGCACCATCAACTTTTCCCAACTCAGTCATCATGCCGCTGGTTGc > 1:1034975/1‑117 (MQ=255) tcatcTACAGCGGTGAACCAGTCAATATCAGAATCAACCTGATGAGTAGTGATCGCATGCGCAATGGACATTGCACCATCAACTTTTCCCAACTCAGTCATCATGCCGCTGGTTGCCATTCTTCCACTAAGCGCAATATCAACACCctgc < 1:1108030/150‑1 (MQ=255) cTACAGCGGTGAACCAGTCAATATCAGAATCATCCTGATGAGTAGTGATCGCATGCGCAATGGACATTGCACCATCAACTTTTCCCAACTCAGTCATCATTCCGCTGGTTGCCATTCTGCCACTAAGCGCAATATCAACACCCTGCTGTa < 1:1165474/150‑1 (MQ=255) cTACAGCGGTGAACCAGTCAATATCAGAATCAACCTGATGAGTAGTGATCGCATGCGCAATGGACATTGCACCATCAACTTTTCCCAACTCAGTCATCATGCCGCTGGTTGCCATTCTTCCACTAAGCGCAATATCAACACCCTGCTGTa > 1:776347/1‑150 (MQ=255) atACAGCGGTGAACCAGTCAATATCAGAATCAACCTGATGAGTAGTGATCGCATGCGCAATGGACATTGCACCATCAACTTTTCCCAACTCAGTCATCATGCCGCTGGTTGCCATTCTTCCACTAAGCGCAATATCAACACCCTGCTGTa < 1:1663397/149‑1 (MQ=255) aGCGGTGAACCAGTCAATATCAGAATCAACCTGATGAGTAGTGATCGCATGCGCAATGGACATTGCACCATCAACTTTTCCCAACTCAGTCATCATGCCGCTGGTTGCCATTCTTCCACTAAGCGCAATATCAACTCCCTGCTGTAAAtt < 2:1539890/150‑1 (MQ=255) gCGGTGAACCAGTCAATATCAGAATCAACCTGATGAGTAGTGATCGCATGCGCAATGGACATTGCACCATCAACTTTTCCCAACTCAGTCATCATGCCGCTGGTTGCCATTCTTCCACTAAGCGCAATATCAACACCCTGCTGTAAATTc < 2:1214859/150‑1 (MQ=255) cGGTGAACCAGTCAATATCAGAATCAACCTGATGAGTAGTGATCGCATGCGCAATGGACATTGCACCATCAACTTTTCCCAACTCAGTCATCATGCCGCTGGTTGCCATTCTTCCAc > 2:1393657/1‑117 (MQ=255) cGGTGAACCAGTCAATATCAGAATCAACCTGATGAGTAGTGATCGCATGCGCAATGGACATTGCACCATCAACTTTTCCCAACTCAGTCATCATGCCGCTGGTTGCCATTCTTCCAc < 1:1393657/117‑1 (MQ=255) gAAACAGTCAATATCAGAATCAACCTGATGAGTAGTGATCGCATGCGCAATGGACATTTCACAATCAACGTTTCCCAACTCAGTCATCATGCCGCTGGTTGCCATTCTTCCCGTACGCGCAATCTCAAAAAGCTGCTGGAAATTCACACg > 2:486011/1‑150 (MQ=255) aCCAGTCAATATCAGAATCAACCTGATGAGTAGTGATCGCATGCGCAATGGACATTGCACCATCAACTTTTCCCAACTCAGTCATCATGCCGCTGGTTGCCATTCTTCCACTAAGCGCAATATCAACACCCTGCTGTAAATTCACCCgga > 1:270985/1‑148 (MQ=255) aCCAGTCAATATCAGAATCAACCTGATGAGTAGTGATCGCATGCGCAAAGGACATTGCACCAACAACTTTACCCAACTCAGTCATCATGCCGCTGCTTGCCATTCTTCCACTAAGCACAATATCAACACCCTGCAGTAAATTGACACGTa > 1:176640/1‑150 (MQ=255) ttCAATATCAGAATGAACCTGATGAGTAGTGTTCGCATGCGCAATGGAGATTGCACCATCATCTTTTCCCAACTCAGTCATCATGCCGCTGGTTGCCATTCTTCCACTAAGCTCAATATCAACACCCTGCTGTAAATTCACACGTATggc < 2:736401/149‑1 (MQ=255) gTCAATATCAGAAGCACCCTGATGAGTAGTGATCGCATGCGCAATGGACAGTGCACCTTCAACTTTTCACAACTCAGTCATCATGCCGCTGGTTGCCATTCTTCGACAAAGCGCAATATCATCCCCGTGCAGTAAAGTCACCCGTAGggc > 2:253510/1‑150 (MQ=255) cAATATCAGAATCAACCTGATGAGTAGTGATCGCATGCGCAATGGACATTGCACCATCAACTTTTCCCAACTCAGTCATCATGCCGCTGGTTGCCATTCTTCCACTAAGCGCAATATCAACACCCTGCTGTAAATTCACACGTATggcgg < 1:906573/150‑1 (MQ=255) atatCAGAATCAACCTGATGAGTAGTGATCGCATGCGCAATGGACATTGCACCATCAACTTTTCCCAACTCAGTCATCATGCCGCTGGTTGCGATTCTTCCACTAAGCGCAATATCAACACCCTGCTGTAAATTCACACGTATGGCGGCa < 1:338005/150‑1 (MQ=255) tatCAGAATCAACCTGATGAGTAGTGATCGCATGCGCAATGGACATTGCACCATCAACTTTTCCCAACTCAGTCATCATGCCGCTGGTTGCCATTCTTCCACTAAGCGCAATATCAACACCCTGCTGTAAATTCACACGTATGGCGGCaa > 2:1249599/1‑150 (MQ=255) atCAGAATCAACCTGATGAGTAGTGATCGCATGCGCAATGGACATTGCACCATCAACTTTTCCCAACTCAGTCATCATGCCGCTGGTTGCCATTCTTCCACTAAGCGCAATATCAACACCCTGCTGTAAATTCCCACGTATTGCGGCAat > 2:380069/1‑150 (MQ=255) gAATCAACCTGATGAGTAGTGATCGCATGCGCAATGGACATTGCACCATCAACTTTTCCCAACTCAGTCATCATGCCGCTGGTTGCCATTCTTCCACTAAGCGCAATATCAACACCCTGCTGTAAATTCACACGTATGGCGGCAATATCt < 1:1666036/150‑1 (MQ=255) aTCAACCTGATGAGTAGTGATCGCATGCGCAATGGACATTGCACCATCAACTTTTCCCAACTCAGTCATCATGCCGCTGGTTGCCATTCTTCCACTAAGCGCAATATCAACACCCTGCTGTAAATTCACACGTATGGCGGCAATATCTTc < 2:1368870/150‑1 (MQ=255) aTCAACCTGATGAGTAGTGATCGCATGCGCAATGGACATTGCACCATCAACTTTTCCCAACTCAGTCATCATGCCGCTGGTTGCCATTCTTCCACTAAGCGCAATATCAACACCCTGCTGTAAATTCACACGTATGGCGGCAATATCTTc < 1:1321992/150‑1 (MQ=255) tCAACCTTATGAGTAGTGATCGCATGCGCAATGGACATTGCACCATCAACTTTTCCCAACTCAGTCATCATGCCGCTGGTTGCCATTCTTCCACTAAGCGCAATATCAACACCCTGCTGTAAATTCACACGTATGGCGGCAATATCTTcc < 2:590956/150‑1 (MQ=255) tCAACCTGATGAGTAGTGATCGCATGCGCAATGGACATTGCACCATCAACTTTTCCCAACTCAGTCATCATGCCGCTGGTTGCCATTCTTCCACTAAGCGCAATATCAACACCCTGCTGTAAATTCACACGTATGGCGGCAATATCTTcc < 1:1702637/150‑1 (MQ=255) ccTGATGAGTAGTGATCGCATGCGCAATGGACATTGCACCATCAACTTTTCCCAACTCAGTCATCATGCCGCTGGTTGCCATTCTTCCACTAAGCGCAATATCAACACCCTGCTGTAAATTCACACGTATGGCGGCAATATCTTCCTTaa < 1:1402191/150‑1 (MQ=255) tgatgaGTAGTGATCGCATGCGCAATGGACATTGCACCATCAACTTTTCCCAACTCAGTCATCATGCCGCTGGTTGCCATTCTTCCACTAAGCGCAATATCAACACCCTGCTGTAAATTCACACGTATGGCGGCAATATCTTCCTTAAGa < 1:1327499/150‑1 (MQ=255) tgatgaGTAGTGATAGCATGCGCAATTGACATTGGACCATCAACTTTTCCCAAATCAGTCATCATTCCTCTGGTTGCCATTCATCCACTAAGCGCAATATCAACACCCTTCTGTAAATTCACACGTATGGCGGCAATATCTTCCTTAAGa < 2:176640/150‑1 (MQ=255) gatgaGTAGTGATCGCATGCGCAATGGACATTGCACCATCAACTTTTCCCAACTCAGTCATCATGCCGCTGGTTGCCATTCTTCCACTAAGCGCAATATCAACACCCTGCTGTAAATTCACACGTATGGCGGCAATATCTTCCTTAAGaa > 2:1317336/1‑150 (MQ=255) tagttgtGATCGCATGCGCAATGGACATTGCACCATCAACTTTTCCCAACTCAGTCATCATGCCGCTGGTTGCCATTCTTCCACTAAGCGCAATATCAACACCCTGCTGTAAATTCACACGTTTGGCGGCAATATCTTCCTTTAGAACtt < 1:1044377/149‑1 (MQ=255) gtGATCGCATGCGCAATGGACATTGCACCATCAACTTTTCCCAACTCAGTCATCATGCCGCTGGTTGCCATTCTTCCACTAAGCGCAATATCAACACCCTGCTGTAAATTCACACGTATGGCGGCAATATCTTCCTTAAGAACTTTGagc < 1:655904/150‑1 (MQ=255) gtGATCGCATGCGCAATGGACATTGAAACATCAACTTTTCCCAACTCAGTCATCATGCCGCTGGTTGCCATTCTTCCACTAAGCGCATTATCAACACCCTGCTGTAAATTCACACGTATGGCGTCAATATCTTCCTTAAGAACTTTGagc < 1:268198/150‑1 (MQ=255) gATCGCATGCGCAATGGACATTGCACCATCAACTTTTCCCAACTCAGTCATCATGCCGCTGGTTGCCATTCTTCCACTAAGCGCAATATCAACACCCTGCTGTAAATTCACACGTATGGCGGCAATATCTTCCTTAAGAACTTTGagcag > 1:1440030/1‑150 (MQ=255) aTCGCATGCGCAATGGACATTGCACCATCAACTTTTCCCAACTCAGTCATCATGCCGCTGGTTGCCATTCTTCCACTAAGCGCAATATCAACACCCTGCTGTAAATTCACACGTATGGCGGCAATATCTTCCTTAAGAACTTTGagcagc < 2:1461982/150‑1 (MQ=255) aTCGCATGCGCAATGGACATTGCACCATCAACTTTTCCCAACTCAGTCATCATGCCGCTGGTTGCCATTCTTCCACTAAGCGCAATATCAACACCCTGCTGTAAATTCACACGTATGGCGGCAATATCTTCCTTAAGAACTTTGagcagc < 1:117030/150‑1 (MQ=255) cGCATGCGCAATGGACATTGCACCATCAACTTTTCCCAACTCAGTCATCATGCCGCTGGTTGCCATTCTTCCACTAAGCGCAATATCAACACCCTGCTGTAAATTCACACGTATGGCGGCAATATCTTCCTTAAGAACTTTGAGCAGCtt > 2:645773/1‑150 (MQ=255) cGCATGCGCAATGGACATTGCACCATCAACTTTTCCCAACTCAGTCATCATGCCGCTGGTTGCCATTCTTCCACTAAGCGCAATATCAACACCCTGCTGTAAATTCACACGTATGGCGGCAATATCTTCCTTAAGAACTTTGAGCAGCtt < 1:1249599/150‑1 (MQ=255) cATGCGCAATGGACATTGCACCATCAACTTTTCCCAACTCAGTCATCATGCCGCTGGTTGCCATTCTTCCACTAAGCGCAATATCAACACCCTGCTGTAAATTCACACGTATGGCGGCAATATCTTCCTTAAGAACTTTGAGCAGCtttt > 2:844554/1‑150 (MQ=255) cATGCGCAATGGACATTGCACCATCAACTTTTCCCAACTCAGTCATCATGCCGCTGGTTGCCATTCTTCCACTAAGCGCAATATCAACACCCTGCTGTAAATTCACACGTATGGCGGCAATATCTTCCTTAAGAACTTTGAGCAGCtttt < 1:1100532/150‑1 (MQ=255) tggtgcAATGTCCATTGCGCCATCAACTTTTCCCAACTCAGTCATCATGCCGCTGGTTGCCATTCTTCCACTAAGCGCAATATCAACACCCTGCTGTAAATTCACACGTATGGCGGCAATATCTTCCTTAAGAACTTTGag > 2:402195/5‑141 (MQ=255) tggtgcAATGTCCATTGCGCCATCAACTTTTCCCAACTCAGTCATCATGCCGCTGGTTGCCATTCTTCCACTAAGCGCAATATCAACACCCTGCTGTAAATTCACACGTATGGCGGCAATATCTTCCTTAAGAACTTTGag < 1:402195/137‑1 (MQ=255) cAATGGACATTGCACCATCACCTTTTCCCAACTCACTCATCATGCCGCAGGTTGCCATTCTTCCACTAAGCGCAATATCAACACCCTGCTGTAACTTCACACGTATGGCGGCAATTTCTTCCGAAAGAACTTTGAGCAGCTTTTTatcca > 2:674272/1‑148 (MQ=255) cAATGGACATTGCACCATCAACTTTTCCCAACTCAGTCATCATGCCGCTGGTTGCCATTCTTCCACTAAGCGCAATATCAACACCCTGCTGTAAATTCACACGTATGGCGGCAATATCTTCCTTAAGAACTTTGAGCAGCTTTTTatcat > 2:365462/1‑150 (MQ=255) ggACATTGCACCATCAACTTTTCCCAACTCAGTCATCATGCCGCTGGTTGCCATTCTTCCACTAAGCGCAATATCAACACCCTGCTGTAAATTCACACGTATGGCGGCAATATCTTCCTTAAGAACTTTGAGCAGCTTTTTATCATCCAg < 2:1590202/150‑1 (MQ=255) ggACATTGCACCATCAACTTTTCCCAACTCAGTCATCATGCCGCTGGTTGCCATTCTTCCACTAAGCGCAATATCAACACCCTGCTGTAAATTCACACGTATGGCGGCAATATCTTCCTTAAGAACTTTGAGCAGCTTTTTATCATCCAg > 1:42746/1‑150 (MQ=255) gACATTGCACCATCAACTTTTCCCAACTCAGTCATCATGCCGCTGGTTGCCATTCTTCCACTAAGCGCAATATCAACACCCTGCTGTAAATTCACACGTATGGCGGCAATATCTTCCTTAAGAACTTTGAGCAGCTTTTTATCATCCAGa > 1:1702938/1‑150 (MQ=255) | AGGTTAATGTTGGCATAACGATAAAAAACACCCGATGAAAATTCCTGAGTTCCCAGATGTGCAGAACCTTGTTCCTGTAAATCATCTACAGCGGTGAACCAGTCAATATCAGAATCAACCTGATGAGTAGTGATCGCATGCGCAATGGACATTGCACCATCAACTTTTCCCAACTCAGTCATCATGCCGCTGGTTGCCATTCTTCCACTAAGCGCAATATCAACACCCTGCTGTAAATTCACACGTATGGCGGCAATATCTTCCTTAAGAACTTTGAGCAGCTTTTTATCATCCAGA > NC_000913/2881448‑2881744 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |