Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,269,9560TC24.4% 60.8 / 19.4 45intergenic (+354/+260)yhaC/rnpBpentapetide repeats‑related protein/RNase P, M1 RNA component
Reads supporting (aligned to +/- strand):  ref base T (4/27);  new base C (1/9);  total (9/36)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.60e-01
Rejected as consensus: Frequency below/above cutoff threshold.

GCCGCATCCGGCATGAATAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAG  >  NC_000913/3269808‑3270104
                                                                                                                                                    |                                                                                                                                                    
gccgcATCCGGCATGAATAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGt                                                                                                                                                      <  2:103270/149‑1 (MQ=255)
gccgcATCCGGCATGAATAAAGCGCACTCAACAATCTGAAACCCGCCGCAACGGTTTATTACGTACATCAGGTAAAACTGCCCGCTAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGGCATTAATCGTTCTGCCCCGCCAAAAGt                                                                                                                                                      >  1:112946/1‑149 (MQ=25)
     aTCCGGCATGAATAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTaaaaa                                                                                                                                                 <  1:968632/149‑1 (MQ=255)
      tCCGGCATGAATAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAAc                                                                                                                                                <  2:1192649/149‑1 (MQ=255)
        cGGAATGTATTAATCGCACTCAAAAATCTGAAACCCGCCGGAACGGTTTTTTACGTATATGAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCATAAGCAAAAAccc                                                                                                                                              <  2:85741/149‑1 (MQ=14)
          gCATGAATAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACccgc                                                                                                                                            <  2:770903/149‑1 (MQ=255)
                aTAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGAGTCGTGTACAGTAAATAATCATTCTGACCCACATAAAAAAATAACccgactcaac                                                                                                                                      >  1:228507/1‑142 (MQ=18)
                      cgcACTCAACAATCTGAAACCCGCCGTATCGGGTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGttt                                                                                                                                <  2:677826/149‑1 (MQ=11)
                        cACTCCACAATCATAAACCCGCCGAACCGGTTTATTACGTACAACAGGTCAAACTGACCGATAAGCCGCTTTCTTTGGGGAATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCTTCGGCGGGttttt                                                                                                                              <  1:20305/149‑1 (MQ=11)
                        cACTCAACAATCTCAATCCCGCCGGAACGGTTTTTTACGTACACGAGGTTAAACTGACCGATAAGCCGCTTTCTTTTTGGTATAGTGTCGTGGACAGTCATTCTTCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGttttt                                                                                                                              <  2:713023/149‑1 (MQ=14)
                        cACTCAAAAATCTTAAACCCGCCGTATCGGTTTATTACGTAAATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGttttt                                                                                                                              <  2:1269838/149‑1 (MQ=14)
                        cACTCAAAAATATTAAACCCGCCGTAGCGGTTTTTTACGTACATCTGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCTTCGGCGGGttttt                                                                                                                              <  2:112946/149‑1 (MQ=11)
                         aCTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTa                                                                                                                             <  2:1061508/149‑1 (MQ=255)
                          cTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCTTCGGCGGGTTTTTAc                                                                                                                            <  2:1026858/149‑1 (MQ=255)
                               caaTCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTaaa                                                                                                                       <  1:1129593/149‑1 (MQ=255)
                                  tCTGAAACCCGCCGGAACGGTTAATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACa                                                                                                                    <  1:177621/149‑1 (MQ=255)
                                   cTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAg                                                                                                                   <  1:460911/149‑1 (MQ=255)
                                     gAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCACATACTATAGCGTATAGTGTCGAAAAAATTAATTCATCTTTATTACACTCAAAAAGAAAAAACACTAAAAAAAATGTTTTTACGTAAAACAGGt                                                                                                                 >  2:1255491/1‑149 (MQ=255)
                                      aaaCCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTTTAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTg                                                                                                                <  2:137342/149‑1 (MQ=255)
                                              cgGACCGGTTTTTTACGTACATCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGAc                                                                                                        <  2:364125/149‑1 (MQ=11)
                                              cgGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGAc                                                                                                        <  1:289478/149‑1 (MQ=255)
                                                gAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCATTCTTTTCGCTAAATTGTCGTGAACAGTCAATAATCATTATGCACAACCAAAACAAAAAAACAGAAAAAAAAAGTTTTTACGTAAAACAGGTGAAACTGACCg                                                                                                      >  2:612628/1‑149 (MQ=255)
                                                 aaCGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGa                                                                                                     <  1:1182892/149‑1 (MQ=255)
                                                  aCGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTTGGTATAGTGTCGTGGACAGTCATTAATCTTTCTGCCACTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGAt                                                                                                    <  1:687771/149‑1 (MQ=255)
                                                     gTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCgg                                                                                                                                    <  2:37250/114‑1 (MQ=255)
                                                     gTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCgg                                                                                                                                    >  1:37250/1‑114 (MQ=255)
                                                      tttATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGc                                                                                                <  2:979735/149‑1 (MQ=255)
                                                        tattaAGTACATCAGGTTAAACTTACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCg                                                                                              <  1:827207/149‑1 (MQ=255)
                                                            acttACATCAGGTAACACTGACCGATAAGCAGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGcttt                                                                                          <  1:1274354/146‑1 (MQ=255)
                                                                 cATCAGGTAAAACTGAGCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCTTCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCtttt                                                                                     <  1:1033162/149‑1 (MQ=255)
                                                                 cATCACTTAAAAATGTCCGATAAGCCGCTTGCATTTGGGTTTCGTGTCGGGGAAAGTCTTTCTTCTATAGGGCCCTCCAAAAGTATAAACCCGCCGAATCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCtttt                                                                                     <  2:629795/149‑1 (MQ=11)
                                                                   tcatttAATACTTAGCGATCAGATGCTTTCTTTTTTTTATTTTGTCGTGGACTGTGTTTCTTATTTCTGCCACTCAAAAAGTAAAAACCCGCCGAATCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTgg                                                                                   <  2:626920/144‑1 (MQ=2)
                                                                   acAGGTAAAAATGACCGATAAGCCGCTTTCTTTTGGGTATAGTGACGTGGACAGTCATTCATATTTCTGCCCCTCCAAAAGTTAAAACCCGCCGAATCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTgg                                                                                   <  2:964859/148‑1 (MQ=11)
                                                                                                     tgcgcctgtgtCGAGGCAAGTCCTTGATCTTAATCGCACTCAAAAAGTATAAACCCGCCGAAGCGGTTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGc                                                 <  2:1251603/142‑1 (MQ=11)
                                                                                                      tgtattttgtCGGGGACAGGCAATCTTCTTTCTGCCACTCCAAAAGTAAAAACCCGCCGAATCGGGTTATTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGcc                                                <  1:567395/142‑1 (MQ=11)
                                                                                                          tcgtgtCGTGGAAAGTCTTTCCTCTTTCTGCCCCTCCACAAGTATAAACCCGCCGCAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTc                                            <  2:1209849/147‑1 (MQ=11)
                                                                                                                    gACAGTCATTCATCTTTCTGCCCCTCCAAAAGAAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGAc                                                                                                        >  2:835249/1‑79 (MQ=21)
                                                                                                                         tcattcatCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGCACCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAAccc                             <  2:1235723/149‑1 (MQ=255)
                                                                                                                         tcattcatCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGAc                                                                                                        >  2:960951/1‑74 (MQ=255)
                                                                                                                                      tGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGaa                       >  2:441807/1‑142 (MQ=37)
                                                                                                                                      tGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGaa                       <  1:441807/142‑1 (MQ=37)
                                                                                                                                         cacTCCAAAATTATAAACCCGCCGTATGGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCGGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCTTCGGCGGGttttt             <  2:1158892/147‑1 (MQ=11)
                                                                                                                                           cTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGtcattca                                                          <  2:842551/102‑1 (MQ=40)
                                                                                                                                           cTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGtcattca                                                          >  1:842551/1‑102 (MQ=40)
                                                                                                                                           cTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCAGCTTTCTTTTGGGTATAGTGTCGTGTACAGTCATTCAACTTTATGAACCTAAAAAAGCAAAAACCAGCCTAATCGGGTTTTTaa           >  2:720972/1‑148 (MQ=11)
                                                                                                                                           cTCCAAAAGCAAAACCCCGCCGTCTCGGGTTTTTACGTACAACAGCTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGGCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTAc           <  2:852649/149‑1 (MQ=11)
                                                                                                                                                  aGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGAAAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAAcc    <  1:1294950/149‑1 (MQ=38)
                                                                                                                                                    tAAAAACCCGCCGCACCGTGTTTTTACGTAAAACAGGTGAAACTGTCCGATAAGCCGCTTTCTTTTGGGTTTAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCTAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAg  <  1:951434/149‑1 (MQ=11)
                                                                                                                                                    |                                                                                                                                                    
GCCGCATCCGGCATGAATAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAG  >  NC_000913/3269808‑3270104

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑