| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 1,636,476 | T→A | 9.5% | intergenic (‑109/‑280) | nohQ ← / → ynfO | pseudogene, Qin prophage; Phage DNA packaging protein Nu1 family;Phage or Prophage Related; DNA packaging protein NU1 homolog from lambdoid prophage Qin/uncharacterized protein, Qin prophage |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,636,476 | 0 | T | A | 9.5% | 1465.2 / 24.6 | 496 | intergenic (‑109/‑280) | nohQ/ynfO | pseudogene, Qin prophage; Phage DNA packaging protein Nu1 family;Phage or Prophage Related; DNA packaging protein NU1 homolog from lambdoid prophage Qin/uncharacterized protein, Qin prophage |
| Reads supporting (aligned to +/- strand): ref base T (171/260); new base A (61/2); total (234/262) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.62e-20 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 509 total aligned reads displayed.
CGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCC‑TTAAACCGGAAAATTTTCATAAATAGCGAAAACCCGCGAGGTCGCCGCCCCGTAACCTGTCGGATCACCGGAAAGGACCCGTAAAGTGATAATGATTATCATCTACATATCACAACGTG > NC_000913/1636326‑1636625 | cACCCAAAATGACACCCACCTGCAATTTGATGACTACCATTGTACATACCACCCCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAACCTCGTTTTCAGCACCTGTCGTTTCCTTTCATTTCAGGGGGTATTTTAAATAAAAACAtt < 2:8006269/150‑1 (MQ=14) cGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTGCTTTCTTTTGAGGGGGGGTTTTTAAAAAAAAAAATAAg > 1:4736497/1‑150 (MQ=14) cGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAg > 2:5423621/1‑150 (MQ=255) cGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTATTTTCAGGGGGTATTTTAAATAAAAACATTAAg > 1:10898434/1‑150 (MQ=255) aaaTGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTa < 1:5034152/150‑1 (MQ=255) agccagcTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACgaa < 2:7490687/150‑1 (MQ=255) agccagcTGATTTTTGTTGACTTCCATTGTACATACCACGCCCAAAAACAGAGAAAGCAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACgaa < 1:8357964/150‑1 (MQ=14) gccagcTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACgaag < 2:6409069/150‑1 (MQ=255) cagcTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTGCTTTGTTTTCAGGGGGGATTTTTAATAAAAACATTAATTTACGACgaataa > 2:2954167/1‑150 (MQ=14) cagcTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACgaagaa < 2:3456796/150‑1 (MQ=255) cagcTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACgaagaa < 2:3674277/150‑1 (MQ=255) agcTGATTTTTGTTGACTTCCATTGTTCATTCAACGGCAAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCTTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACgaagaag < 1:6700029/150‑1 (MQ=255) ctgctTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACgaagaagaa > 2:7061957/1‑150 (MQ=255) tgctTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAAc < 2:6042906/150‑1 (MQ=255) tgctTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAAc < 1:4333848/150‑1 (MQ=255) ctTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTGCTTTATTTTGAGGGGGTATTTTAAATAAAAACATTTAGTTAAGACGAAGGAGAACgg > 1:308912/1‑150 (MQ=14) tttttGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGa < 1:4439478/150‑1 (MQ=255) gttgACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTAAGGGGGTATTTTAAATAAAAACATTAAGTTAAGAAGAAGAAGAACGGAAATGc > 1:9455700/1‑150 (MQ=255) ttgACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTTAGACGAAGCAGAACGGAAATGcc > 2:8498520/1‑150 (MQ=255) ttcaattCAATTGTACATACCACCCAAAAAAACACACAAACCAAACGACACACCCCCAAAAGCACGTTTTCAGCACCTCACGTTTCCTTTCATTACAGGGCGTATTTTAAATAAAAACATTAACTTACGACGAAGAAGAACGGAAATGcc < 2:3782606/145‑1 (MQ=2) tgACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCC‑t < 2:5284622/150‑1 (MQ=255) aCTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCC‑TTa < 2:6274930/150‑1 (MQ=255) ttCCATTGTTCATTCCCCGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTTAATAAAAAAAATAAGTTTAGACGAAGAAGAAAGGAAATTCC‑TTaaa > 2:1992256/1‑150 (MQ=14) ttCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGTAGAAGAACGGAAAATCC‑TTaaa > 2:3931772/1‑150 (MQ=255) ttCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAACTGCC‑TTaaa > 2:6749765/1‑150 (MQ=255) tCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTGTGCTTTCTTTTAGGGGGGTGTTTTATATAAAAAAAATAAGTTAAGACGAAAAAGAACGGCAATACC‑TTaaaa > 1:5118889/1‑149 (MQ=14) caaTTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCC‑TTAAAcc < 1:10136960/148‑1 (MQ=255) aTTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCC‑TTAAACCgg < 1:10028793/150‑1 (MQ=255) aTTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCC‑TTAAACCgg < 1:1630793/150‑1 (MQ=255) aTTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTACTTTCTTTTAAGGGGGTATTTTAAATAAAAAAATTAAGTTAAGACGAAGAAGAACGGAAAAGCC‑TTAAACCgg > 1:2746250/1‑150 (MQ=14) ttGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTGTCCTTTCTTTTCAGGGGGGATTTTAAATAAAAACAATAAGTTAAGACCAAGAATAACGGCAATTCC‑ATaaaaccga > 2:9213773/1‑145 (MQ=14) gTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCC‑TTAAACCGGaaa < 1:1445636/150‑1 (MQ=255) ttCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTGCTTTATTTTAATGGGGTGTTTTAAATAAAAAAAATAATTTAAGAAGAAGAATAAAGGAAATGCC‑ATAAAACGGaaaa > 1:4055761/1‑150 (MQ=14) ttCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCC‑TTAAACCGGaaaa < 2:6827904/150‑1 (MQ=255) ttCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCC‑TTAAACCGGaaaa < 2:8201801/150‑1 (MQ=255) ttCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCC‑TTAAACCGGAAAAtttt < 2:5178851/150‑1 (MQ=255) ttCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCATTATTTTAAGGGGGTATTTTTAATAAAAAAAATAATTTAAGACGAATAAGAAAGGAAAAGAC‑ATAAAAAGGAAAAattt > 1:4304427/1‑150 (MQ=14) tCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCC‑TTAAACCGGAAAATTTTc < 1:2295435/150‑1 (MQ=255) tCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCC‑TTAAACCGGAAAATTTTc < 2:8903494/150‑1 (MQ=255) tCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTACTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTAAGACGAAGAAGAACCGAAATGCC‑TTAAACCGGAAAATTTTc > 2:4252560/1‑150 (MQ=255) ccACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTGCTTTCTGTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGCAATGCC‑TTAAACCGGAAAATTTTCa > 2:5888598/1‑150 (MQ=255) ccACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCATTCTTTTCAGGGGGTATTTTAAATAAAAAAAATAATTTAAGACGAAGAAGAACGGAAATTCC‑GTAAACAGGAAAAATTTCa > 1:10802920/1‑150 (MQ=14) ccACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTGTGCTTTCTTTTAAGGGGGTATTTTAAATAAAAAAAATAAATTAAGACGAAGAAAAAAGGAAATGCCATGTAACGGGAAAAtttaa > 1:7595569/1‑148 (MQ=14) aCGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTGCTTTATTTTAAGGGGGTATTTTAAATAAAAAAAAAAATTTAACAAGAAGAATAACCGAAATTCC‑TTAAACCGGAAAATTTTAATa > 1:2574962/1‑150 (MQ=14) cGGCCAAAAACAGAGAAAGGAAACGACAGAGGCACAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAAAATTGAGTTAAAACGAAGAAGAACCGAAAAGCA‑TTAAACCGGAAAATTTtaataa > 2:7651508/1‑150 (MQ=14) aaaaaaCATACAAACCAAACGACAGAGGCCCAAAAGCTCGTTTTCATCACCTGTCGTTTCCTTTCATTTCAGGGGGTATTTTAAAAAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCC‑TTAAACCGGAAAATTTTCATAAATAg < 1:2089057/149‑1 (MQ=14) aaaaaCAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCC‑TTAAACCGGAAAATTTTCATAAATAGc < 1:6136394/150‑1 (MQ=255) agagAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAAACGAAATGCC‑TTAAACCGGGAAATTTTAATAAATATCGaaaaa > 2:1185128/1‑149 (MQ=14) gaAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGTACGGGAATGCC‑TTAAACCGGAAAATTTTCATAAATAGCGAAAAACcg > 2:2196677/1‑150 (MQ=255) ggAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCC‑TTAAACCGGAAAATTTTCATAAATAGCGAAAACCCGCGAg < 2:7257592/150‑1 (MQ=255) gAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTACTTTATTTTGAGGGGGTATTTTAAATAAAAACAATAAGTTACGACGAAGAAGAACGGAAAATCC‑GTAAAACGGAAAATTTTAATAAATAGCGAAAACCCGCGAgg > 2:1035520/1‑150 (MQ=11) aCGACATAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTGTTTTGAGGGGGTATTTTAAATAAAAAAATTTATTTAAGAAGAATAATTACGGAAATGGC‑TTAAACCGGAAAATTTTAATAAATAGCGTAAACCCGCGAGGTcg > 2:10850759/1‑150 (MQ=14) cGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCC‑TTAAACCGTAAAATTTTCATAAATAGCGAAAACCCGCGAGGTcgc < 1:9138485/150‑1 (MQ=255) cGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCATTTCTTTTCTGGGGTTATTTTAAATAAAAACATTAAGTTACGACTAAGAAGAACGGAAATGCC‑TTAAACCGGAAAATTTTCATAAATAGCGAAAACCCGCGAGGTcgc < 1:7444878/150‑1 (MQ=255) aCAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACAATAAGTTACGACGAAGAAGAACCGAAATGCC‑TTAAACCGGAAAAATTTAATAAATAGCGAAAACCCGCGAGGTcgccg > 2:251166/1‑150 (MQ=255) aCAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAAAATTAAGTTACGACGAAGAAGAACGGAAAAGCC‑GTAAACCGGAAAATTTTAATAAATAGCGAAAACCCGCGAGGTcgccc > 2:9327807/1‑149 (MQ=255) gagGCACAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCC‑TTAAACCGGAAAATTTTCATAAATAGCGAAAACCCGCGAGGTCGCCGccc < 2:10255608/150‑1 (MQ=255) agGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTGCTTTCTTTTCAGGGGGTATTTTAAATAAAAAAATTAATTTACGACGAAGAAGAACGGAAATGCC‑TTAAACCGGAAAATTTTAATAAATATCGAAAAACCGCGAGGTCGCCGcccc > 2:2883785/1‑150 (MQ=14) agGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCC‑TTAAACCGGAAAATTTTCATAAATAGCCAAAACCCGCGACGTCGCCGcccc > 2:10064656/1‑150 (MQ=255) agGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCATTTCTTTTCAGGGGTTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCC‑TTAAACCGTAAAATTTTCATAAATAGCGAAAACCCGCGAGGTCGCCGcccc < 1:10312344/150‑1 (MQ=255) cAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCC‑TTAAACCGGAAAATTTTCATAAATAGCGAAAACCCGCGAGGTCGCCGCCCCGTAAc < 1:7279340/150‑1 (MQ=40) cAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTATTTTCAGGGGGTATTTTAAATAAAAACAATAAGTTAAGACGAAGAAGAACCGAAATGCC‑TTAAAACGGAAAATTTTAATAAATAGCGAAAAACCCCGAGGTCGCCGCCCCGTAAc > 2:1052273/1‑150 (MQ=14) gCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGTTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCC‑TTAAACCGGAAAATTTTCATAAATAGCGAAAACCCGCGAGGTCGCCGCCCCGTAACCTGTc < 1:9673757/150‑1 (MQ=255) cTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCC‑TTAAACCGGAAAATTTTCATACATAGCGAAAACCCGCGAGGTCGCCGCCCCGTAACCTGTCg < 2:5642543/150‑1 (MQ=255) gTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCC‑TTAAACCGGAAAATTTTCATAAATAGCGAAAACCCGCGAGGTCGCCGCCCCGTAACCTGTCGGAt < 1:10503084/150‑1 (MQ=38) ttttCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCC‑TTAAACCGGAAAATTTTCATAAATAGCGAAAACCCGCGAGGTCGCCGCCCCGTAACCTGTCGGATc < 1:5580880/150‑1 (MQ=38) tttCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCC‑TTAAACCGGAAAATTTTCATAAATAGCGAAAACCCGCGAGGTCGCCGCCCCGTAACCTGTCGGATCa < 1:1097795/150‑1 (MQ=38) ttCAGCACCTGTCGTTTCCTTTCTTTTGAGGGGGTATTTTAAATAAAAAAAATAATTTAAGACGAATAAGAACGGAAAAGCC‑TTAAAACGGAAAATTTTAATAAATATAGAAAACCCGCGAGGTAGCCGCCCCGTAAACTGTCGGATCAc > 2:8379491/1‑150 (MQ=11) ttCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCC‑TTAAACCGGAAAATTTTCATAAATAGCGAAAACCCGCGAGGTCGCCGCCCCGTAACCTGTCGGATCAc < 1:5730195/150‑1 (MQ=38) cACCTGTCGTTTGCTTTCTTTTAAGGGGGTATTTTAAATAAAAAAAATAAAATAACACCAAGAAGAAACGAAAAAAC‑ATAAAACCGAAAAATTTAAAAAAAATCGAAAACCCCCCAGGTCGCCGCCCCCAAACCAGTCGGATAGCCGGaa > 2:4982276/1‑150 (MQ=255) cACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCC‑TTAAACCGGAAAATTTTCATAAATAGCGAAAACCCGCGAGGTCGCCGCCCCGTAACCTGTCGGATCACCGGaa < 2:4520326/150‑1 (MQ=39) ccTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCC‑TTAAACCGGAAAATTTTCATAAATAGCGAAAACCCGCGAGGTCGCCGCCCCGTAACCTGTCGGATCACCGGAAAg < 1:3618179/150‑1 (MQ=39) gTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCC‑TTAAACCGGAAAATTTTCATAAATAGCGAAAACCCGCGAGGTCGCCGCCCCGTAACCTGTCGGATCACCGGAAAGGAc < 2:3550134/150‑1 (MQ=39) gTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCC‑TTAAACCGGAAAATTTTCATAAATAGCGAAAACCCGCGAGGTCGCCGCCCCGTAACCTGTCGGATCACCGGAAAGGAc < 2:1902991/150‑1 (MQ=39) ctttctttTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCC‑TTAAACCGGAAAATTTTCATAAATAGCGAAAACCCGCGAGGTCGCCGCCCCGTAACCTGTCGGATCACCGGAAAGGACCCGTAAAg < 2:2746259/150‑1 (MQ=255) tttctttTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCC‑TTAAACCGGAAAATTTTCATAAATAGCGAAAACCCGCGAGGTCGCCGCCCCGTAACCTGTCGGATCACCGGAAAGGACCCGTAAAGt < 1:8659022/150‑1 (MQ=255) tttctttTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCC‑TTAAACCGGAAAATTTTCATAAATAGCGAAAACCCGCGAGGTCGCCGCCCCGTAACCTGTCGGATCACCGGAAAGGACCCGTAAAGt > 2:4395148/1‑150 (MQ=255) tttctttTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCC‑TTAAACCGGAAAATTTTCATAAATAGCGAAAACCCGCGAGGTCGCCGCCCCGTAACCTGTCGGATCACCGGAAAGGACCCGTAAAGt > 1:10392228/1‑150 (MQ=255) tttctttTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCC‑TTAAACCGGAAAATTTTCATAAATAGCGAAAACCCGCGAGGTCGCCGCCCCGTAACCTGTCGGATCACCGGAAAGGACCCGTAAAGt < 2:7808073/150‑1 (MQ=255) tttctttTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCC‑TTAAACCGGAAAATTTTCATAAATAGCGAAAACCCGCGAGGTCGCCGCCCCGTAACCTGTCGGATCACCGGAAAGGACCCGTAAAGt > 1:6423587/1‑150 (MQ=255) ctttTCAGGGGTTATTTTAAATAAAAACATTAAGTTACGACGAATAAGAACGGAAATGCC‑TTAAACCGGAAAATTTTCATAAATAGCGAAAACCCGCGAGGTCGCCGCCCCGTAACCTGTCGGATCACCGGAAAGGACCCGTAAAGTGAt < 2:9694988/150‑1 (MQ=255) ttttCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCC‑TTAAACCGGAAAATTTTCATAAATAGCGAAAACCCGCGAGGTCGCCGCCCCGTAACCTGTCGGATCACCGGAAAGGACCCGTAAAGTGATa > 1:5377609/1‑150 (MQ=255) ttttCAGGGGGTACTTTAAATAACAACATTCAGGTACGACGAAGAAGAACGGAAATGCC‑TTAAACCGGAAAATTTTCATAAATAGCGAAAACCCGCGAGGTCGCCGCCCCGTAACCTGTCGGATCACCGGAAAGGACCCGTAACGTGATa < 1:3349604/150‑1 (MQ=14) tttCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCC‑TTAAACCGGAAAATTTTCATAAATAGCGAAAACCCGCGAGGTCGCCGCCCCGTAACCTGTCGGATCACCGGAAAGGACCCGTAAAGTGATaa < 2:6157138/150‑1 (MQ=255) tttCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCC‑TTAAACCGGAAAATTTTCATAAATAGCGAAAACCCGCGAGGTCGCCGCCCCGTAACCTGTCGGATCACCGGAAAGGACCCGTAAAGTGATaa > 1:3951178/1‑150 (MQ=255) tCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCC‑TTAAACCGGAAAATTTTCATAAATAGCGAAAACCCGCGAGGTCGCCGCCCCGTAACCTGTCGGATCACCGGAAAGGACCCGTAAAGTGATAATg < 2:8741048/150‑1 (MQ=255) aGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCC‑TTAAACCGGAAAATTTTCATAAATAGCGAAAACCCGCGAGGTCGCCGCCCCGTAACCTGTCGGATCACCGGAAAGGACCCGTAAAGTGATAATGAt < 2:3380052/150‑1 (MQ=255) gggTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCC‑TTAAACCGGAAAATTTTCATAAATAGCGAAAACCCGCGAGGTCGCCGCCCCGTAACCTGTCGGATCACCGGAAAGGACCCGTAAAGTGATAATGATTat < 1:7153852/150‑1 (MQ=255) ggTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCC‑TTAAACCGGAAAATTTTCATAAATAGCGAAAACCCGCGAGGTCGCCGCCCCGTAACCTGTCGGATCACCGGAAAGGACCCGTAAAGTGATAATGATTatc > 1:679144/1‑150 (MQ=255) ttttAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCC‑TTAAACCGGAAAATTTTCATAAATAGCGAAAACCCGCGAGGTCGCCGCCCCGTAACCTGTCGGATCACCGGAAAGGACCCGTAAAGTGATAATGATTATCATCt > 1:2439411/1‑150 (MQ=255) tttAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCC‑TTAAACCGGAAAATTTTCATAAATAGCGAAAACCCGCGAGGTCGCCGCCCCGTAACCTGTCGGATCACCGGAAAGGACCCGTAAAGTGATAATGATTATCATCTa > 2:1590729/1‑150 (MQ=255) ttAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCC‑TTAAACCGGAAAATTTTCATAAATAGCGAAAACCCGCGAGGTCGCCGCCCCGTAACCTGTCGGATCACCGGAAAGGACCCGTAAAGTGATAATGATTATCATCTAc < 2:5086875/150‑1 (MQ=255) ttAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCC‑TTAAACCGGAAAATTTTCATAAATAGCGAAAACCCGCGAGGTCGCCGCCCCGTAACCTGTCGGATCACCGGAAAGGACCCGTAAAGTGATAATGATTATCATCTAc < 1:10601656/150‑1 (MQ=255) ttAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCC‑TTAAACCGGAAAATTTTCATAAATAGCGAAAACCCGCGAGGTCGCCGCCCCGTAACCTGTCGGATCACCGGAAAGGACCCGTAAAGTGATAATGATTATCATCTAc < 1:5956189/150‑1 (MQ=255) ttAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCC‑TTAAACCGGAAAATTTTCATAAATAGCGAAAACACGCGAGGTCGCCGCCCCGTAACCTGTCGGATCACCGGAAAGGACCCGTAAAGTGATAATGATTATCATCTAc > 1:7946975/1‑150 (MQ=255) aaaaCATTAAGTTACGACGAAGAAGAACGGAAATGCC‑TTAAACCGGAAAATTTTCATAAATAGCGAAAACCCGCGAGGTCGCCGCCCCGTAACCTGTCGGATCACCGGAAAGGACCCGTAAAGTGATAATGATTATCATCTACATATcac > 1:2942209/1‑150 (MQ=255) aaaCATTAAGTTACGACGAAGAAGAACGGAAATGCC‑TTAAACCGGAAAATTTTCATAAATAGCGAAAACCCGCGAGGTCGCCGCCCCGTAACCTGTCGGATCACCGGAAAGGACCCGTAAAGTGATAATGATTATCATCTACATATcaca > 1:9781631/1‑150 (MQ=255) aCATTAAGTTACGACGAAGAAGAACGGAAATGCC‑TTAAACCGGAAAATTTTCATAAATAGCGAAAACCCGCGAGGTCGCCGCCCCGTAACCTGTCGGATCACCGGAAAGGACCCGTAAAGTGATAATGATTATCATCTACATATCACAAc < 1:1776499/150‑1 (MQ=255) aTTAAGTTACGACGAAGAAGAACGGAAATGCC‑TTAAACCGGAAAATTTTCATAAATAGCGAAAACCCGCGAGGTCGCCGCCCCGTAACCTGTCGGATCACCGGAAAGGACCCGTAAAGTGATAATGATTATCATCTACATATCACAAcgt > 2:4840248/1‑150 (MQ=255) aTTAAGTTACGACGAAGAAGAACGGAAATGCC‑TTAAACCGGAAAATTTTCATAAATAGCGAAAACCCGCGAGGTCGCCGCCCCGTAACCTGTCGGATCACCGGAAAGGACCCGTAAAGTGATAATGATTATCATCTACATATCACAAcgt > 2:3202063/1‑150 (MQ=255) | CGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCC‑TTAAACCGGAAAATTTTCATAAATAGCGAAAACCCGCGAGGTCGCCGCCCCGTAACCTGTCGGATCACCGGAAAGGACCCGTAAAGTGATAATGATTATCATCTACATATCACAACGTG > NC_000913/1636326‑1636625 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |