New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1053799	57 (0.750)	5 (0.070)	5/262	NT	7.2%	coding (2380/2745 nt)	torS	hybrid sensory histidine kinase in two‑component regulatory system with TorR
	?	NC_000913	= 1053865	75 (1.040)					coding (2314/2745 nt)	torS	hybrid sensory histidine kinase in two‑component regulatory system with TorR

TGTCGATTTCATCGAGAAGCGGCAGGGCATGTTGTGTAAATAATACCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGATTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1053646‑1053799 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcgccagCGTACCAGTTCATTATTCCGCGGGATTATCCCTAAACCGGTGCCGCGTGAAGTGCTCGGTCAGTTACTGGCGCACTATCTCCAACTGCAAGTCAATAATGATCAATCGCTGGATGTATCGCAACTCAATGAAGATGCTCAGTTAATGGG  <  NC_000913/1053865‑1053717                                                                                                                                                                                                                                                                                                                 TGTCGATTTCATCGAGAAGCGGCAGGGCATGTTGTGTAAATAATACCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGATTGATCATTTTTGACTTGCAGTTGGAGATAGTGCG                                                                                                                                                           >  1:76552/1‑150    CGATTTCATCGAGAAGCGGCAGGGCATGTTGTGTAAATAATACCAGCCATTCGTTGATCTTCTCCGTCCCCATAAACTGAGCATCATCATTGAGTTGCGATACATCCAGCGATTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCA                                                                                                                                                        >  2:982548/1‑150    CGATTTAATCGAGAAGCGGGAGGGCATGTTGTGTAAATAATACCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGATTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCA                                                                                                                                                        <  2:942213/150‑1                               GTTGTGGAAATAATACCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTTAGTTGCGATACATCCAGCGATTGATCAATATTGACTTGCAGTTGGAGATAGTGCGCCAGCGTACCAGTTCATTATTCCGCGGGAT                                                                                                                             <  1:744730/150‑1                                                                                CTGAGCATCTTCATTGAGTTGCGATACATCCAGCGATTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGCGTACCAGTTCATTATTCCGCGGGATTATCCCTAAACCGGTGCCGCGTGAAGTGCTCGGTCAGTTACTGGCGCAC                                                                            <  2:729367/150‑1                                                                                  tAGCATCTTCATTGAGTTGCGATACATCCAGCGATTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGCGTACCAGTTCATTATTCCGCGGGATTATCCCTAAACCGGTGCCGCGTGAAGTGCTCGGTCAGTTACTGGCGCACTA                                                                          <  2:861054/149‑1                                                                                   cgcagcaTCATTGAGTTGCGATACATCCAGCGATTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGCGTACCAGTTCATTATTCCGCGGGATTATCCCTAAACCGGTGCCGCGTGAAGTGCTCGGTCAGTTACTGGCGCACTAT                                                                         <  1:1022757/143‑1                                                                                    GCATCTTCATTGAGATGCGATACATCCAGCGATTGATCCTTATTGACTTGCAGTTGGAGATAGTGCGCCAGCGTACCAGTTCATTATTCCGCGGGATTATCCCTAAACCGGTGCCGCGTGAAGTGCTCGGGCAGTTACTGGCGCACTATC                                                                        <  1:259551/150‑1                                                                                                                                                  caGCGCCAGCGTACCAGTGCATTATTCCGCGGGATTATCCCTAAACCGGCGCCGCGTGAAGTGCTCGGTCAGTTACGGGCGCACTATCTCCAACTGCAAGTCAATAATGATCAATCGCTGGATGTATCGCAACTCAATGAAGATGCTCAG          <  1:533707/148‑1                                                                                                                                                   TGCGCCAGCGTACCAGTTCATTCATCCGCGGGATTATCCCTAAACCGGTGCCGCGTTAAGTTCTCGGTCAGTTACTGGCGCACTATCTCCAACTGCAAGTCAATAATTATCAATCGCTGGATGTATCGCAACTCAATGAAGATTCTCAGT         <  2:769340/150‑1                                                                                                                                                     CGCCAGCGTACCAGTTCATTATTCCGAGGGATTATCCCTAAACCGGTGCCGCGTGAAGTGCTCGGTCAGTTACTGGCGCACTATCTCCAACTGCAAGTCAATAATGATCAATCGCTGGATGTATCGCAACTCAATGAAGATGCTCAGTTt       >  2:1077872/1‑149                                                                                                                                                       CCAGCGTACCAGTTCATTATTCCGCGGGATTATCCCTAAACCGGTGCCGCGTGAAGTGCTCGGTCAGTTACTGGCGCACTATCTCCAACTGCAAGTCAATAATGATCAATCGCTGGATGTATCGCAACTCAATGAAGATGCTCAGTTAAT     >  1:1090997/1‑150                                                                                                                                                        CAGCGTACCAGTTCATTATTCCGCGGGATTATCCCTAAACCGGTGCCGCGTGAAGTGCTCGGTCAGTTACTGGCGCACTATCTCCAACTGCAAGTCAATAATGATCAATCGCTGGATGTATCGCAACTCAATGAAGATGCTCAGTTAATG    >  1:1052967/1‑150                                                                                                                                                          GCGTACCAGTTCATTATTCCGCGGGATTATCCCTAAACCGGTGCCGCGTGAAGTGCTCGGTCAGTTACTGGCGCACTATCTCCAACTGCAAGTCAATAATGATCAATCGCTGGATGTATCGCAACTCAATGAAGATGCTCAGTTAATGGG  <  1:1159900/150‑1                                                                                                                                                          GCGTACCAGTTCATTATTCCGCGGGATTATCCCTAAACCGGTGCCGCGTGAAGTGCTCGGTCAGTTACTGGCGCACTATCTCCAACTGCAAGTCAATAATGATCAATCGCTGGATGTATCGCAACTCAATGAAGATGCTCAGTTAATGGG  <  1:333383/150‑1                                                                                                                                                                                                                                                                                                                 TGTCGATTTCATCGAGAAGCGGCAGGGCATGTTGTGTAAATAATACCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGATTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1053646‑1053799 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcgccagCGTACCAGTTCATTATTCCGCGGGATTATCCCTAAACCGGTGCCGCGTGAAGTGCTCGGTCAGTTACTGGCGCACTATCTCCAACTGCAAGTCAATAATGATCAATCGCTGGATGTATCGCAACTCAATGAAGATGCTCAGTTAATGGG  <  NC_000913/1053865‑1053717

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.