| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4447464 | 65 (0.850) | 3 (0.040) | 3/262 | NT | 4.5% | coding (3353/3780 nt) | tamB | translocation and assembly module for autotransporter export, inner membrane subunit |
| ? | NC_000913 | = 4447516 | 67 (0.930) | coding (3405/3780 nt) | tamB | translocation and assembly module for autotransporter export, inner membrane subunit | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GGCAGATCAACATCCCTGAAGGGCGCTTCCATGCCTATGGTCAGGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGATCAACCGTATCTTAATATTGAAGCTATTCGTAACCCGGATGCTACAGAAGACGACGTAATCGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4447308‑4447464‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcgccggGTCAGAGAAGATCTCCGCTTTCGGTTCGTCCGCCAGACCAGTGACGCGAACTCCGGCGATTACGTCGTCTTCTGTAGCATCCGGGTTACGAATAGCTTCAATATTAAGATACGGTTGATCTGGCGGACCAGAGAACAGTAACTCACCTT < NC_000913/4447516‑4447368 GGCAGATCAACATCCCTGAAGGGCGCTTCCATGCCTATGGTCAGGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGATCAACCGTATCTTAATATTGAAGCTATTCGTAACCCGGATGCTACAGAAGACGACGTAA > 2:205397/1‑150 GCAGATCAACATCCCTGAAGGGCGCTTCCATGCCTATGGTCAGGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGATCAACCGTATCTTAATATTGAAGCTATTCGTAACCCGGATGCTACAGAAGACGACGTAAT < 2:1188146/150‑1 GATCAACATCCCTGAAGGGCGCTTCCATGCCTATGGTCAGGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGATCAACCGTATCTTAATATTGAAGCTATTCGTAACCCGGATGCTACAGAAGACGACGTAATCGC > 2:989914/1‑150 GATCAACATCCCTGAAGGGCGCTTCCATGCCTATGGTCAGGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGATCAACCGTATCTTAATATTGAAGCTATTCGTAACCCGGATGCTACAGAAGACGACGTAATCGC > 2:279509/1‑150 GATCAACATCCCTGAAGGGCGCTTCCATGCCTATGGTCAGGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGATCAACCGAATCTTAATATTGAAGCTATTCGTAACCCGGATGCTACAGAAGACGACGTAATCGC > 2:926715/1‑150 ATCAACATCCCTGAAGGGCGCTTCCATGCCTATGGTCAGGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGATCAACCGTATCTTAATATTGAAGCTATTCGTAACCCGGATGCTACAGAAGACGACGTAATCGCC < 2:977895/150‑1 ATCAACATCCCTGAAGGGCGCTTCCATGCCTATGGTCAGGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGATCAACCGTATCTTAATATTGAAGCTATTCGTAACCCGGATGCTACAGAAGACGACGTAATCGCC < 2:403143/150‑1 CAACATCCCTGAAGGGCGCTTCCATGCCTATGGTCAGGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGATCAACCGTATCTTAATATTGAAGCTATTCGTAACCCGGATGCTACAGAAGACGACGTAATCGCCGG < 2:709719/150‑1 GTTACTGTTCTCTGGTCCGCCAGATCAACCGTATCTTAATTTTGAAGCTATTCGTAACCCGGATGCTACAGAAGACGACGTAATCGCCGGGTCAGAGAAGATCTCCGCTTTCGGTTCGTCCGCCAGACCAGTGACGCGAACTCCGGCGAT < 2:454402/150‑1 ccGTTCTCCGCTCCGCCAGATCACCCGTAGCTAACTCTCGAAGCGAGTCGTAACCCGGATGCTACAGAAGACGACGTAATCGCCGGGTCAGAGAAGATCTCCGCTGTCGGTTCGTCCGCCAGACCAGTGACGCGAACTCCGGCGATTACG < 1:529086/148‑1 TTCTCTGGGCCGCCAGATCAACCGTATCTAAATATTGAAGCTATTCGTAACCCGGATGCTACAGAAGACGACGTAATCGCCGGGTCAGAGAAGATCTCCGCTTTCGGTTCGTCCGCCAGACCAGTGACGCGAACTCCGGCGATTACGTCG < 1:1211834/150‑1 ATCGCCGGGTCAGAGAAGATCTCCGCTGTCGGTTCTTCCGCCAGACCAGGTACGCCAACTCCGGCGATTACGTCGTCTTCTGTAGCATCCGGGTTACGAATAGCTTCAATATTAAGATACGGTTGATCTGGCGGACCAGAGAACAGTAAC < 1:99665/150‑1 TCGCCGGGTCAGAGAAGATCTCCGCTTTCGGTTCGTCCGCCAGACCAGTGACGCGAACTCCGGCGATTACGTCGTCTTCTGTAGCATCCGGGTTACGAATAGCTTCAATATTAAGATACGGTTGATCTGGCGGACCAGAGAACAGTAACT < 2:246674/150‑1 CGCCGGGTCAGAGAAGATCTCCGCTTTCGGTTCGTCCGCCAGACCAGTGACGCGAACTCCGGCGATTACGTCGTCTTCTGTAGCATCCGGGTTACGAATAGCTTCAATATTTAGATACGGTTGATCTGGCGGACCAGCGCACAGTAACTC > 2:982055/1‑150 CGCCGGGTCAGAGAAGATCTCCGCTTTCGGTTCGTCCGCCAGACCAGTGACGCGAACTCCGGCGATTACGTCGGCTTCTGTAGCATCCGGGTTACGAATAGCTTCAATATTAAGATACGGTTGATCTGGCGGACCAGAGAACAGTAACTC < 1:293139/150‑1 CGGGTCAGAGAAGATCTCCGCTTTCGGTTCGTCCGCCAGACCAGTGACGCGAACTCCGGCGATTACGTCGTCTTCTGTAGCATCCGGGTTACGAATAGCTTCAATATTAAGATACGGTTGATCTGGCGGACCAGAGAACAGTAACTCACC < 1:725995/150‑1 CGGGTCAGAGAAGATCTCCGCTTTCGGTTCGTCCGCCAGACCAGTGACGCGAACTCCGGCGATTACGTCGTCTTCTGTAGCATCCGGGTTACGAATAGCTTCAATATTAAGATACGGTTGATCTGGCGGACCAGAGAACAGTAACTCACC > 2:978464/1‑150 CGGGTCAGAGAAGATCTCCGCGTTCGGTTCGTCCGCCAGACCAGTGACGCGAACTCCGGCGATTACGTCGTCTGCTGTAGCATCCGGGTTACGAATAGCTTCAATATTAAGATACGGGTGATCTGGCGGACCAGAGAACAGTAACTCACC < 2:224767/150‑1 GGGTCAGAGAAGATCTCCGCTTTCGGTTCGTCCGCCAGACCAGTGACGCGAACTCCGGCGATTACGTCGTCTTCTGTAGCATCCGGGTTACGAATAGCTTCAATATTAAGATACGGTTTATCTGGCGGACCAGAGAACAGTAACTCACat > 1:604940/1‑148 GGTCATAGAAGATCTCCGCTTTCGGTTCGTCCTCCAGACCAGTGACGCGAACTCCGGCGATTACGGCGTCTTCTTTAGCATCCGGGTTACGAATAGCTTCAATATTAAGATACGGTTGATCTGGCGGACCAGAGAACAGTAACTCACCTT < 2:41919/150‑1 GGTCAGAGAAGATCTCCGCTTTCGGTTCGTCCGCCAGACCAGTGACGCGAACTCCGGCGATTACGTCGTCTTCTGTAGCATCCGGGTTACGAATAGCTTCAATATTAAGATACGGTTGATCTGGCGGACCAGAGAACAGTAACTCACCTT > 2:136254/1‑150 GGCAGATCAACATCCCTGAAGGGCGCTTCCATGCCTATGGTCAGGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGATCAACCGTATCTTAATATTGAAGCTATTCGTAACCCGGATGCTACAGAAGACGACGTAATCGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4447308‑4447464‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcgccggGTCAGAGAAGATCTCCGCTTTCGGTTCGTCCGCCAGACCAGTGACGCGAACTCCGGCGATTACGTCGTCTTCTGTAGCATCCGGGTTACGAATAGCTTCAATATTAAGATACGGTTGATCTGGCGGACCAGAGAACAGTAACTCACCTT < NC_000913/4447516‑4447368 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |