New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	780511 =	86 (1.130)	4 (0.060) +AAAAAGT	4/264	NT	6.0%	intergenic (+122/‑43)	ybgF/lysT	periplasmic TolA‑binding protein/tRNA‑Lys
	?	NC_000913	780843 =	45 (0.590)					noncoding (1/76 nt)	lysW	tRNA‑Lys

CGAGACGAAGTCGAGTCATCCTGCACGACCCACCACTAACATAGTTAGTTGTAGTATCCAGCGTAGTATCGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAC‑CGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAG  >  NC_000913/780695‑780987                                                                                                                                                      |                                                                                                                                                 cGAGACGAAGTCGAGTCATCCTGCACGACCCACCACTAACATAGTTAGATGTAGTATCCAGCGTAGTATCGGGTCATTAGCTCAGCTGGGACAGCACCGCCCTAACAAGGAGGGGGTCGGCGGTTCGCTCCCGGCATCCCCCACCAC‑Cgg                                                                                                                                                 >  1:515517/1‑150 (MQ=21)   tgaCGTAGTCGAGTCATCCTGCACGAACCACCTCTAACATAGTTTGTTGTAGTATCCAGCGTAGTATCGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGGCGGCGGTTCGATCCCGTCATCACCCACCAC‑CGGGt                                                                                                                                               <  1:103576/149‑1 (MQ=18)   agccGAAGTCGAGGCATCCTGCACGACCCACCACTAACATAGTTAGTTGAAGTATCCAGCGTAGTATCGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAC‑CGGGt                                                                                                                                               <  2:173378/147‑1 (MQ=255)     aCGAAGTCGAGTCATCCTGCACGACCCACCACTAACATAGTTAGTTGTAGTATCCAGCGTAGTATCGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAC‑CGGGTCg                                                                                                                                             <  1:602185/150‑1 (MQ=255)          gTCTAGTCATCCTGCACGACCCACCACTAACATAGTTAGTTGTAGTATCCAGCGTAGTATCGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAC‑CGGGTCGTTAGc                                                                                                                                        <  1:784619/150‑1 (MQ=255)          gTCGAGTCATCCTGCACGACCCACCACTAACATAGTTAGTTGTAGTATCCAGCGTAGTATCGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAC‑CGGGTCGTTAGc                                                                                                                                        <  1:701803/150‑1 (MQ=255)              aGTCATCCTGCACGACCCACCACTAACATAGTTAGTTGTAGTATCCAGCGTTGTATCGGGGGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGAGGTTCGATCCCGTCATCACCCACCAC‑CGGGTCGTTAGCTCAg                                                                                                                                    <  2:1097986/150‑1 (MQ=255)                   tCCTGCACGACCCACCACAAACATAGTTAGTTGTAGTATCCAGCGTAGTATCGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAC‑CGGGTCGTTAGCTCAGTTGGt                                                                                                                               <  2:372123/150‑1 (MQ=255)                    ccTGCACGACCCACCACTAACATAGTTAGTTGTAGTATCCAGCGTAGTATCGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAC‑CGGGTTGTTAGCTCAGTTGGTa                                                                                                                              <  1:558280/150‑1 (MQ=255)                            aCCCACCACTAACATAGTTAGTTGTAGTATCCAGCGTAGTATCGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTCGGGTCGTTAGCTCAGTTg                                                                                                                                 <  2:108580/140‑1 (MQ=255)                            aCCCACCACTAACATAGTTAGTTGTAGTATCCAGCGTAGTATCGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTCGGGTCGTTAGCTCAGTTg                                                                                                                                 >  1:108580/1‑140 (MQ=255)                                       actatgttagttGTAGTATCCAGCCTATTATCGGGTGATTATCTCAGCTGGGATAGCACCTCCCTTACCAGGAGGGGGGCGGCGGTTGGATCCCGTCATCACCCACCACTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAAt                                                                                                            <  2:202501/145‑1 (MQ=11)                                           agttagttGTAGTATCCAGCGTAGTATCGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAC‑CGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAAtt                                                                                                       <  2:401939/150‑1 (MQ=40)                                               agttGTAGTATCCAGCGTAGTATCGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAC‑CCGGTCGTTATCTCAGTTGGTAGAGCAGTTTACTTTTAATCAATTTGta                                                                                                   >  2:1093946/1‑149 (MQ=255)                                               agttGTAGTATCCAGCGTAGTATCGGGTGATTAGCTCAGCTGGGAGAGAACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAC‑CGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTc                                                                                                   >  1:441064/1‑150 (MQ=38)                                                gttGTAGTATCCAGCGTATTATCGTGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAC‑CGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCg                                                                                                  <  2:198945/150‑1 (MQ=255)                                                gttGTAGTATCCAGCGTAGTATCGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGGTCGATCCCGTCATCCCCCACCAC‑GGGGTACTTAGGTCAGGTGGGTGTGGCGTTGGGGTTTAATCCATTGGtag                                                                                                  >  1:186807/1‑148 (MQ=11)                                                      gtaTCCAGCGTAGTATCGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAC‑CGGGTAGTTAGCTGAGTTGGTAGAGCAGTTGCCTTTTTATCAATTGGTAGCACGtt                                                                                            >  1:714397/1‑150 (MQ=11)                                                      gtaTCCAGCGTAGTATCGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAC‑AGGGTCGTTAGGTCAGTTGGTATAGGAGTTTTCGTTTAATAAATTTGTCGGAGGtt                                                                                            >  1:709943/1‑150 (MQ=11)                                                         tCCAGCGTAGTATCGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAC‑CGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGa                                                                                         <  1:441468/150‑1 (MQ=35)                                                               gatgtaTCGGGTTTTTAGGTCACCTGGAATAGCACCTCCTTTACAAGTTGGGGGTCGGGGTTTCTTTCCCGACTTAACCCACCAA‑CGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTg                                                                                   <  2:714397/147‑1 (MQ=11)                                                                   taTCGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAC‑CGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACg                                                                               <  2:702683/150‑1 (MQ=33)                                                                    aTCGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAC‑CGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGa                                                                              <  2:40369/150‑1 (MQ=33)                                                                    aTCGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAC‑ACGGTACTTAACTAAGTTGGTATAGCAGTTGACTTTTAATAAATTGGTACCAAGTTACAATGCAGCACGa                                                                              >  2:659563/1‑150 (MQ=11)                                                                       gggTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAC‑CGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAAATGGTCGCAGGTTCGAATCCTGCCCGAccc                                                                           >  2:224773/1‑150 (MQ=18)                                                                        ggTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAC‑CGGGTCGTTAGCGCAGTTGGTTGAGCAGTTGACTTTTAATCAATTGGTAGCAGGTTCGAATCCTGCACGAcccc                                                                          >  1:309798/1‑149 (MQ=255)                                                                          tGATTAGCTCTGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAC‑CGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACATTTAATCAATTGGTCGCAGGTTAGAAACCTGCACGACccacc                                                                        >  2:1209063/1‑150 (MQ=255)                                                                                gCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCCCCCACCAC‑CGGGTCGGTAGCTCAGTTGGTATAGCAGTTGACTTTTTATAAATTGGTCGCAGGTTCGAATACATCACGACccaccaaagtt                                                                  >  2:1228367/1‑145 (MQ=11)                                                                                   cAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAC‑CGGGTCGTTAGCTCCGTTGGGAGAGCAGTTGACTTTTTATCAATTGGTCGCAGGTTCGCATGCTGCACGCCCCACCAGTTTTAAc                                                               >  1:932293/1‑150 (MQ=11)                                                                                       tGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAC‑CGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCTAATCCTGCACGACCCACCAGTTTTAACATCg                                                           <  2:1020064/150‑1 (MQ=21)                                                                                       tGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAC‑CGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCTAATCCTGCACGACCCACCAGTTTTAACATCg                                                           <  2:408223/150‑1 (MQ=21)                                                                                         ggAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAC‑CGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGaa                                                         <  1:728366/150‑1 (MQ=35)                                                                                          gagaGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAC‑CGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAg                                                        >  2:804872/1‑150 (MQ=37)                                                                                                 ccTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAC‑CGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGAtt                                                 >  1:1030605/1‑149 (MQ=255)                                                                                                  cTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAC‑CGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGt                                                >  2:688754/1‑150 (MQ=40)                                                                                                      cTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAC‑CGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAg                                            <  1:557208/150‑1 (MQ=40)                                                                                                        tttcgttgctttcggtttgtttgatatcccgtggcaacgaaaaagtGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACttt                                                                                                                >  1:61201‑M2/47‑81 (MQ=255)                                                                                                        tttcgttgctttcggtttgtttgatatcccgtggcaacgaaaaagtGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACttt                                                                                                                <  2:61201‑M2/35‑1 (MQ=255)                                                                                                        tACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAC‑CGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAgag                                          >  2:807004/1‑148 (MQ=255)                                                                                                          cAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAC‑CGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCgtg                                        >  1:828029/1‑150 (MQ=40)                                                                                                          cAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAC‑CGGGTAGTTATCTCATTTGGTAGAGCAGTTGAATTTTAATAAATTGGTAGCAGGTTCGAATCCAGGACGACCCACCAGTATTAAAAAAAAAAACAGATTTTAAGCgtg                                        >  2:666594/1‑150 (MQ=11)                                                                                                           cgttgctttcggtttgtttgatatcccgtggcaacgaaaaagtGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGa                                                   <  1:42992‑M2/96‑1 (MQ=255)                                                                                                           cgttgctttcggtttgtttgatatcccgtggcaacgaaaaagtGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGa                                                   >  2:42992‑M2/44‑139 (MQ=255)                                                                                                              caggGGGTCGGCGGTTCGATCCAGTTATCACCCAGCAC‑ATGTGCGATAGCTCAGTTGGTAGTGCAGTTGACTTTTAATCTTTTGTGCTCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAgg                                    <  1:908787/149‑1 (MQ=14)                                                                                                                       ggcggTTCGTTCCCGTCATCACCCACCCA‑CGGGTCGTTAGCTCAGTTGGTAGAGCTGTTGTCTTTTAATCAATTGTTCGAAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTg                           <  1:1148372/150‑1 (MQ=14)                                                                                                                         cggTTCGATCCCGTCATCACCCACCAC‑CGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCg                         >  2:1304586/1‑150 (MQ=255)                                                                                                                                aTCCCGTCATCACCCACCAC‑CGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCaa                  >  1:707602/1‑150 (MQ=255)                                                                                                                                          cacccaccAC‑CGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGAcc                                                                            >  1:1256338/1‑82 (MQ=37)                                                                                                                                          cacccaccAC‑CGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGAcc                                                                            <  2:1256338/82‑1 (MQ=37)                                                                                                                                          cacccaccAC‑CGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAACACCGATGTTAAGCGTGTAGGATAACGTTGCGGCAGCAACGGCCCGTAg        >  1:1157148/1‑150 (MQ=255)                                                                                                                                           acccaccAC‑CGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGAAGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACTGCCCCTAgg       >  2:859491/1‑150 (MQ=255)                                                                                                                                            cccaccAC‑CGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATAGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAggg      >  2:944629/1‑150 (MQ=255)                                                                                                                                                ccac‑cGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAACACAGATGTTAAGCGTGTACGATAACGTTTCGACAGCAACGGCCCGTAGGacgaa  >  1:637465/1‑149 (MQ=11)                                                                                                                                                      gggTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGa                                                          <  1:271991/89‑1 (MQ=32)                                                                                                                                                      gggTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGa                                                          >  2:271991/1‑89 (MQ=32)                                                                                                                                                      |                                                                                                                                                 CGAGACGAAGTCGAGTCATCCTGCACGACCCACCACTAACATAGTTAGTTGTAGTATCCAGCGTAGTATCGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAC‑CGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAG  >  NC_000913/780695‑780987

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.