New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 781446	49 (0.640)	9 (0.140)	6/238	NT	17.3%	intergenic (+2/‑131)	lysZ/lysQ	tRNA‑Lys/tRNA‑Lys
	?	NC_000913	2521487 =	44 (0.670)					intergenic (+159/+106)	lysV/xapR	tRNA‑Lys/transcriptional activator of xapAB

AGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCACCTACTGTGTCAATGCAGCCAACAGCTTAACCATCGCGGGCGTC  >  NC_000913/2521338‑2521635                                                                                                                                                      |                                                                                                                                                     aGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAATGATTCGAACCTGCTGCAGGTTTGAGTTGAGCGCTGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATg                                                                                                                                                      <  1:638167/150‑1 (MQ=12)   cgcCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTa                                                                                                                                                    >  1:135726/1‑150 (MQ=32)       cTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTaaaaa                                                                                                                                                >  1:144642/1‑150 (MQ=32)            ggCGCTTTTTTAGTATTTGCTTTAGTAAATTTTTCGAACTTGCAGCTGTTTTGTGTTTTGCGCAGCTAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAgcgt                                                                                                                                           <  1:998649/150‑2 (MQ=11)            ggCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAgcgc                                                                                                                                           >  2:334655/1‑150 (MQ=32)              cgcTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGCCGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGCCCCCCCAATGTAAAAAAGCTccc                                                                                                                                         >  2:273336/1‑150 (MQ=255)                gttttttACTATCTGCTATACTCAAAGATTCGTACCTGCAGCAGTTTTTAGGTGAGCGCAGCGAAACAACGGAGCCTCTCGCGGCGACGGCACGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTa                                                                                                                                       <  1:69244/149‑1 (MQ=11)                cTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTa                                                                                                                                       >  1:447368/1‑150 (MQ=32)                cTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTa                                                                                                                                       >  2:622518/1‑150 (MQ=32)                cTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTa                                                                                                                                       >  1:1184284/1‑150 (MQ=32)                  tttttACTATCTGCGATACTCATAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTaaa                                                                                                                                     <  1:56159/150‑1 (MQ=17)                   ttttACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCTAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAg                                                                                                                                    <  1:350660/150‑1 (MQ=17)                     ccaatcttaaagattggccccgagtaaaaatctttcaggtaacacccgtatgggtcgttagctcagttggtagagcagttgacttttaatcaattggtcgcaggttcgaatcctgcacgacccaccaatGTAAAAAAGCGCCCTAAAGgc                                                                                                                                  >  1:123269‑M2/130‑150 (MQ=255)                                   aCTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATc                                                                                                                    <  1:18542/150‑1 (MQ=11)                                   aCTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATc                                                                                                                    >  1:989423/1‑150 (MQ=11)                                      taacgATTGGAAACTGCAGCTGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGACCGAATGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGc                                                                                                                 <  2:125746/146‑1 (MQ=11)                                      ccccgagtaaaaatctttcaggtaacacccgtatgggtcgttagctcagttggtagagcagttgacttttaatcaattggtcgcaggttcgaatcctgcacgacccaccaatg                                                                                                                                                      >  2:681759‑M2/113‑113 (MQ=255)                                      ccccgagtaaaaatctttcaggtaacacccgtatgggtcgttagctcagttggtagagcagttgacttttaatcaattggtcgcaggttcgaatcctgcacgacccaccaatg                                                                                                                                                      <  1:681759‑M2/1‑1 (MQ=255)                                      cAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACACCGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCCCCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGATATCTgg                                                                                                                 >  1:68199/1‑149 (MQ=12)                                       cccgagtaaaaatctttcaggtaacacccgtatgggtcgttagctcagttggtagagcagttgacttttaatcaattggtcgcaggttcgaatcctgcacgacccaccaatGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCg                                                                                                                <  2:123269‑M2/39‑1 (MQ=255)                                         ctatctaaaatctttcaggtaaacccggtatgggtcgttagctcagttggtagagcagttgacttttaatcaattggtcgcaggttcgaatcctgcacgacccaccaatGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGAt                                                                                                              <  2:279634‑M2/41‑1 (MQ=255)                                          gaatCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGCGCCGCTCGCGGAGCCGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCCCGACCCACCCATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGAtt                                                                                                             >  1:625183/4‑150 (MQ=11)                                            ttCGCAGCTGCAGCAGGTTTTAGTTTAGCGCAGCGAAACTACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTg                                                                                                           <  1:230249/150‑1 (MQ=11)                                            ttCGACCCTGCCGCAGGTTTGAGTTGACCGCAGCTAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTg                                                                                                           <  1:1099279/150‑1 (MQ=255)                                              cGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCg                                                                                                         <  2:411753/150‑1 (MQ=39)                                              cGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCg                                                                                                         <  2:753826/150‑1 (MQ=39)                                              cGAACCTGCAGCAGGGTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGGAGTGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCg                                                                                                         <  1:679257/150‑1 (MQ=255)                                                aaCCTGCAGCAGGTTTGTGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGaa                                                                                                       >  2:834894/1‑150 (MQ=255)                                                      cagcagGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAAAGTAAAAAAGCGCCCTAAAGGCGCGTTTTTGCTATCTGCGATTTGCGAAATTGcc                                                                                                 >  2:182947/1‑150 (MQ=255)                                                       agcagGTTTGAGTTGAGCGCAGCGAAACAACGGAGGCGCTCGCGGCGACGGCCAGAAGGGAGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCt                                                                                                <  2:1252060/150‑1 (MQ=255)                                                         ctggTTTGAGTTGAGCTAATCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGa                                                                                              <  2:843192/148‑1 (MQ=255)                                                          ggtaacacccgtatgggtcgttagctcagttggtagagcagttgacttttaatcaattggtcgcaggttcgaatcctgcacgacccaccaatGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTAtctgcgatactcaaa                                                                                                       >  2:865228‑M2/93‑133 (MQ=255)                                                          ggtaacacccgtatgggtcgttagctcagttggtagagcagttgacttttaatcaattggtcgcaggttcgaatcctgcacgacccaccaatGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTAtctgcgatactcaaa                                                                                                       <  1:865228‑M2/48‑8 (MQ=255)                                                            gTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCACTAAAGGCGCTTGTTTGCTATCTGCGATTTGCGAAATTGCCTGATgc                                                                                           >  2:834369/1‑150 (MQ=255)                                                                acccgtatgggtcgttagctcagttggtagagcagttgacttttaatcaattggtcgcaggttcgaatcctgcacgacccaccaatGTAAAAAAgcgc                                                                                                                                           >  2:1039593‑M2/87‑98 (MQ=255)                                                                acccgtatgggtcgttagctcagttggtagagcagttgacttttaatcaattggtcgcaggttcgaatcctgcacgacccaccaatGTAAAAAAgcgc                                                                                                                                           <  1:1039593‑M2/12‑1 (MQ=255)                                                                       gcgcAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATgcg                                                                                          <  1:430903/140‑1 (MQ=255)                                                                       gcgcAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACAAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATgcg                                                                                          >  2:430903/1‑140 (MQ=255)                                                                        cgcAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGc                                                                               >  2:388217/1‑150 (MQ=255)                                                                        cgaaGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGc                                                                               <  2:1051909/147‑1 (MQ=255)                                                                         ggtcgttagctcagttggtagagcagttgacttttaatcaattggtcgcaggttcgaatcctgcacgacccaccaatGTaaaaa                                                                                                                                                <  1:863675‑M2/7‑1 (MQ=255)                                                                         ggtcgttagctcagttggtagagcagttgacttttaatcaattggtcgcaggttcgaatcctgcacgacccaccaatGTaaaaa                                                                                                                                                >  2:863675‑M2/78‑84 (MQ=255)                                                                         gcAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGCGCGAAGCGAGTCCTCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCGTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCa                                                                              >  1:1188635/1‑150 (MQ=255)                                                                             cGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCCTCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCGGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGact                                                                          >  1:1258595/1‑150 (MQ=255)                                                                                aacaacGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGactact                                                                       <  1:809586/150‑1 (MQ=255)                                                                                  caacGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTAt                                                                     >  2:1247492/1‑150 (MQ=255)                                                                                        aGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCgg                                                               >  2:464198/1‑150 (MQ=255)                                                                                             cTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCTAtt                                                          >  1:694686/1‑150 (MQ=255)                                                                                               ggcggcgACGGCCCGAAGGGCGAGCGAATCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTcc                                                        <  2:1081174/149‑1 (MQ=255)                                                                                                 cggcgACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTg                                                      <  1:78687/150‑1 (MQ=255)                                                                                                  ggcgACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACTCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGt                                                     >  2:771159/1‑150 (MQ=255)                                                                                                       cGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTctcct                                                >  1:1237951/1‑150 (MQ=255)                                                                                                           cagAAGGGCGAGCGAAGCGAGTCATCCTGCACGAGCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCAcc                                            <  2:51597/148‑1 (MQ=255)                                                                                                                tggtgagcgaAGCGAGTAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCACCTACtg                                       <  2:521473/146‑1 (MQ=255)                                                                                                                  gcgagcgaAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCACCTACtgtg                                     >  2:1060406/1‑150 (MQ=255)                                                                                                                  gcgagcgaAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCACCTACtgtg                                     <  2:509791/150‑1 (MQ=255)                                                                                                                    gagcgaAGCGAGGCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCACCTACTGTGTc                                   <  2:890158/150‑1 (MQ=255)                                                                                                                              aGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCACCTACTGTGTCAATGCAGCCa                         >  1:159591/1‑150 (MQ=255)                                                                                                                                gcATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCACCTACTGTGTCAATGCAGCCAAc                       <  1:548700/149‑1 (MQ=255)                                                                                                                                gaatcctgcacgacccaccaatGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCACCTACTGTGTCAATGCAGCCAAc                       <  1:839748‑M2/128‑1 (MQ=255)                                                                                                                                 cATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCACCTACTGTGTCAATGCAGCCAACa                      <  1:582990/150‑1 (MQ=255)                                                                                                                                   tcctgcacgacccaccaatGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCACCTACTGTGTCAATGCAGCCAACAGc                    >  1:1143552‑M2/20‑150 (MQ=255)                                                                                                                                     ctgcacgacccaccaatGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCACCTACTGTGTCAATGCAGCCAACAGCtt                  <  2:989423‑M2/133‑1 (MQ=255)                                                                                                                                     ctgcacgacccaccaatGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCACCTACTGTGTCAATGCAGCCAACAGCtt                  <  1:1070392‑M2/133‑1 (MQ=255)                                                                                                                                             cccaccaatGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCACCTACTGTGTCAATGCAGCCAACAGCTTAACCATcg          <  2:1237951‑M2/141‑1 (MQ=255)                                                                                                                                               caccaatGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCCCCTACTGTGTCAATGCAGCCAACAGCTTACCCATcgcg        >  1:1143882‑M2/8‑150 (MQ=255)                                                                                                                                                accaatGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCACCTACTGTGTCAATGCAGCCAACAGCTTAACCATCGCgg       <  2:1101303‑M2/144‑1 (MQ=255)                                                                                                                                                aacaatGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTACGGCAATTCCTGTCTCCTCACCTACTGTGTCAATGCAGCCAACAGCTTAACCATCGCgg       <  2:661940‑M2/144‑1 (MQ=255)                                                                                                                                                 ccaatGTAAAAAAGCGCCCTATAGGAGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGAATACTATTTCCGGCAATTCCTGTCTCCTCACCTACTGTGTCAATGCAGCCAACAGCTTAACCATCGCggg      <  1:109541‑M2/145‑1 (MQ=255)                                                                                                                                                 ccaatGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCACCTACTGTGTCAATGCAGCCAACAGCTTAACCATCGCggg      >  1:436117‑M2/6‑150 (MQ=255)                                                                                                                                                 ccaatGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCACCTACTGTGTCAATGCAGCCAACAGCTTAACCATCGCggg      <  2:936296‑M2/145‑1 (MQ=255)                                                                                                                                                 ccaatGTAAAAAAGCGCCCTAAAGGAGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCACCTACTGTGTCAATGCAGCCTACAGCTTAACCATCGCggg      <  1:1135973‑M2/145‑1 (MQ=255)                                                                                                                                                     tGTAAAAAAGCGCCCTAACGGCGCTTTTTTGCTATCTGCGATTTGCTAAATTGCCTGATGCGCTTCACTAAGAAGAGTACTATTTGCGGCAATTCCTGTCTCCTCACCTACTGTGTCAATGCAGCCAACAGCTTAACCATCGCGGGCGTc  <  1:201678‑M2/149‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                     AGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCACCTACTGTGTCAATGCAGCCAACAGCTTAACCATCGCGGGCGTC  >  NC_000913/2521338‑2521635

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.