Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_000913 | 826,369 | A→C | 9.5% | V295G (GTC→GGC) | ybhS ← | putative ABC transporter permease |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 826,369 | 0 | A | C | 9.5% | 149.4 / 5.8 | 60 | V295G (GTC→GGC) | ybhS | putative ABC transporter permease |
Reads supporting (aligned to +/- strand): ref base A (25/29); new base C (2/4); total (27/33) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.81e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.12e-01 |
CCGGCGAGGAACAGGCTTTGCAGGGTGCTGACGAAATAACGAGCGGGAATAATGTACGTCACCGCGCGGATCACCGCGGGCATACTGTCGATCTG‑AAAAATAAAGCCGGAAAGCATAATCGACGGCAGAAAAGCGGCGTTCAGGGCGACCTGAGCGGCATTGAACTGGTTGCGGGTAATCGTGGAAATCAGCAGCCCCATCCCCAGGGTACTGAGTAAAAACAGGCTGGAGATAAAAAACAGAATCAGCAGCGACCCGCGATACGGCACGCCGAGAATAAACACTGACACCAGCAT > NC_000913/826222‑826517 | ccGGCGAGGAACAGGCTTTGCAGGGTGCTGACGAAATAACGAGCGGGAATAATGTACGTCACCGCGCGGATCACCGCGGGCATACTGTCGATCTG‑AAAAATAAAGCCGGAAAGCATAATCGACGGCAGAAAAGCGGCGTTCAGGGCGAcc < 2:845632/150‑1 (MQ=255) ggCGATTAACAGTCTTTGCAGGTTGCTGACGAAATAACGAGCGGGAATAATGTACGTCACCGCGCGGATCACCTCGGGCATACTGTCGATCTG‑AAAAATAAAGCCGGAAAGCATAATCGACGTCAGAAAAGCGGCGTTCAGGGCGACCTg < 1:106630/150‑1 (MQ=255) ggAACAGGCTTTGCAGGGTGCTGACGAACTAACGCGCGGGAATAATGTACGGCACCGCGCGGATCACCGCGGGCATAGTGTCGATCTG‑AAAAATAAAGCCGTAAAGCATAATCGACGGCAGAAAAGCGGCGTTCAGGGCGACCTGAGCgg < 1:1108672/150‑1 (MQ=255) gAACAGGCTTTGCAGGCTGCTGACGAAATAACGAGCGGGAATAATGTACGTCACCGCGCGGATCACCGCGGGCATACTGTCGATCTG‑AAAAATAAAGCCGGAAAGCATAATCGACGGCAGAAAAGCGGCGCTCAGGTCGCCCTGAACgcc < 2:1231759/150‑3 (MQ=255) gAACAGGCGTTGCAGGGTGCGGACGAAATAACGAGCGGGAATAATGTACGTCACCGCGCGGATCACCGCGGGCATACTGTCGATCTG‑AAAAATAAAGCCGGAAAGCATAATCGACGGCAGAAAAGCGGCGCTCAGGTCGCCCTGAACgcc < 2:1226842/150‑3 (MQ=255) aaCAGGCTTTGCAGGGTGCTGACGAAATAACGAGCGGGAATAATGTACGTCACCGCGCGGATCACCGCGGGCATACTGTCGATCTG‑AAAAATAAAGCCGGAAAGCATAATCGACGGCAGAAAAGCGGCGCTCAGGTCGCCCTGAACgccg < 2:771907/150‑4 (MQ=255) aGGCTTTGCAGGGTGCTGACGAAATAACGAGCGGGAATAATGTACGTCACCGCGCGGATCACCGCGGGCATACTGTCGATCTG‑AAAAATAAAGCCGGAAAGCATAATCGACGGCAGAAAAGCGGCGTTCAGGGCGACCTGAGCGGCATTg < 2:853025/150‑1 (MQ=255) aGGGTGCTGACGAAATAACGAGCGGGAATAATGTACGTCACCGCGCGGATCACCGCGGGCATACTGTCGATCTG‑AAAAATAAAGCCGGAAAGCATAATCGACGGCAGAAAAGCGGCGTTCAGGGCGACCTGAGCGGCATTGAACTGGTTg < 2:1136254/150‑1 (MQ=255) ggggCTGACGAAATAACGCGCGGGAATAATGTACGTCACCGCGCGGATCACCGCGGGCATACTGTCGATCGG‑AAAATAAAAGCCGGAAAGCATACTCGACGGCAGAATAGCGGCGTTCAGGGCGACCTGAGCGGCATTGAACTGGTTGCg < 1:1228006/147‑1 (MQ=255) ggTGCTGACGAAATAACGAGCGGGAATAATGTACGTCACCGCGCGGATCACCGCGGGCATACTGTCGATCTG‑AAAAATAAAGCCGGAAAGCATAATCGACGGCAGAAAAGCGGCGTTCAGGGCGACCTGAGCGGCATTGAACTGGTTGCg < 1:1137559/150‑1 (MQ=255) tGCTGACGAAATAACGAGCGGGAATAATGTACGTCACCGCGCGGATCACCGCGGGCATACTGTCGATCTG‑AAAAATAAAGCCGGAAAGCATAATCGACGGCAGAAAAGCGGCGTTCAGGGCGACCTGAGCGGCATTGAACTGGTTGCggg < 1:238674/150‑1 (MQ=255) ggCTGACCAAATAACGAGCGTGAATAATGTACGTCACCGCGCGGATCTCCGCGGGCATACTGTCGATCTG‑AAAAATAAAGCCGGAAAGCATAATCGACGGCAGAAAAGCGGCGTTCAGGGCGACCTGAGCGGCATTGAACTGGTTGCggg < 2:106763/149‑1 (MQ=255) cTGACGAAATAACGAGCGGGAATAATGTACGTCACCGCGCGGATCACCGCGGGCATACTGTCGATCTG‑AAAAATAAAGCCGGAAAGCATAATCGACGGCAGAAAAGCGGCGTTCAGGGCGACCTGAGCGGCATTGAACTGGTTGCGGGTa > 2:586645/1‑150 (MQ=255) tGACGAAATAACGAGCGGGAATAATGTACGTCACCGCGCGGATCACCGCGGGCATACTGACGATCTG‑AAAAATAAAGCCGGAAATCATAATCGACGGCAGAAACGCGGCGTTCAGGGCGACCTGAGCGGCATTGAACTGGTTGCGGGTaa > 1:21683/1‑150 (MQ=255) cGAAATAACGAGCGGGAATAATGTACGTCACCGCGCGGATCACCGCGGGCATACTGTCGATCTG‑AAAAATAAAGCCGGAAAGCATAATCGACGGCAGAAAAGCGGCGTTCAGGGCGACCTGCGCGGCATTGAACTGGTTGCGGGTAATCg > 1:118871/1‑150 (MQ=255) aaaTAACGAGCGGGAATAATGTACGTCACCGCGCGGATCACCGCGGGCATACTGTCGATCTG‑AAAAATAAAGCCGGAAAGCATAATCGACGGCAGAAAAGCGGCGCTCAGGTCGCCCTg > 1:395443/1‑119 (MQ=255) aaaTAACGAGCGGGAATAATGTACGTCACCGCGCGGATCACCGCGGGCATACTGTCGATCTG‑AAAAATAAAGCCGGAAAGCATAATCGACGGCAGAAAAGCGGCGCTCAGGTCGCCCTg < 2:395443/119‑1 (MQ=255) aaCGAGCGGGAATAATGTACGTCACCGCGCGGATCACCGCGGGCATACTGTCGATCTG‑AAAAATAAAGCCGGAAAGCATAATCGACGGCAGAAAAGCGGCGTTCAGGGCGACCTGAGCGGCATTGAACTGGTTGCGGGTAATCGTGGaaa > 2:753465/1‑150 (MQ=255) aGCGGGAATAATGTACGTCACCGCGCGGATCACCGCGGGCATACTGTCGATCTG‑AAAAATAAAGCCGGAAAGCATAATCGACGGCAGAAAAGCGGCGTTCAGGGCGACCTGAGCGGCATTGAACTGGTTGCGGGTAATCGTGGAAATcag > 1:1230481/1‑150 (MQ=255) cGGGAATAATGTACGTCACCGCGCGGATCACCGCGGGCATACTGTCGATCTG‑AAAAATAAAGCCGGAAAGCATAATCGCCGGCAGAAAAGCGGCGTTCAGGGCGACCTGAGCGGCATTGAACTGGTTGC‑GGTAATCGTGGAAATcagcag > 1:524752/1‑150 (MQ=255) ggAATAATGTACGTCACCGCGCGGATCACCGCGGGCATACTGTCGATCTG‑AAAAATAAAGCCGGAAAGCATAATCGACGGCAGAAAAGCGGCGTTCAGGGCGCCCTGAGCGGCATTGAACTGGTTGCGGGTTATCGTGGAAATCagcagc > 2:583892/1‑150 (MQ=255) gAATAATGTACGTCACCGCGCGGATCACCGCGGGCATACTGTCGATCTG‑AAAAATAAAGCCGGAAAGCATAATCGACGGCAGAAAAGCGGCGTTCAGGGCGACCTGAGCGGCATTGAACTGGTTGCGGGTAATCGTGGAAATCAGCAGcc < 2:782874/150‑1 (MQ=255) ataatGTACGTCACCGCGCGGATCACCGCGGGCATACTGTCGATCTG‑AAAAATAAAGCCGGAAAGCATAATCGACGGCAGCAAAGCGGCGTTCAGGGCGACCTGAGCGGCATTGAACTGGTTGCGGGTAATCGTGGAAATCAGCAGcccc > 2:973989/1‑150 (MQ=255) taatGTACGTCACCGCGCGGATCACCGCGGGCATACTGTCGATCTG‑AAAAATAAAGCCGGAAAGCATAATCGACGGCAGAAAAGCGGCGTTCAGGGCGACCTGAGCGGCATTGAACTGGTTGCGGGTAATCGTGGAAATCAGCAGCCCCa > 1:1131103/1‑150 (MQ=255) gTACGTCACCGCGCGGATCACCGCGGGCATACTGTCGATCTG‑AAAAATAAAGCCGGAAAGCATAATCGACGGCAGAAAAGCGGCGTTCAGGGCGACCTGAGCGGCATTGAACTGGTTGCGGGTAATCGTGGAAATCAGCAGCCCCATccc < 1:524615/150‑1 (MQ=255) aCGTCACCGCGCGGATCACCGCGGGCATACTGGCGATCTG‑AAAAATAAAGCCGGAAAGCATAATCGACGGCAGAAAAGCGGCGTTCAGGGCGACCTGAGCGGCATTGAACTGGTTGCGGGTAATCGTGGAAATCAGCAGCCCCATCCCCa < 1:248501/150‑1 (MQ=255) cGTCACCGCGCGGATCACCGCGGGCATACTGTCGATCTG‑AAAAATAAAGCCGGAAAGCATAATCGACGGCAGAAAAGCGGCGTTCAGGGCGACCTGAGCGGCATTGAACTGGTTGCGGGTAATCGTGGAAATCAGCAGCCCCATCCCCAg > 2:874943/1‑150 (MQ=255) tCACCGCTCGGATCACCGCGGGCATACTGTCGATCTG‑AAAAATAAACCAGGAAAGCATAATCGACGGCAGAAAAGCGGCGTTCAGGGCGACCTGAGCGGCATTGAACTGGTTGCGGGTAATCGTGGAAATCAGCAGCCCCATCCCCAggg < 2:167852/150‑1 (MQ=255) tCACCGCGCGGATCACCGCGGGCATACTGTCGATCTG‑AAAAATAAAGCCGGAAAGCATAATCGACGGCAGAAAAGCGGCGTTCAGGGCGACCTGAGCGGCATTGAACTGGTTGCGGGTAATCGTGGAAATCAGCAGCCCCATCCCCAggg < 1:689288/150‑1 (MQ=255) tCACCGCGCGGATCACCGCGGGCATACTGTCGATCTG‑AAAAATAAAGCCGGAAAGCATAATCGACGGCAGAAAAGCGGCGTTCAGGGCGACCTGAGCGGCATTGAACTGGTTGCGGGTAATCGTGGAAATCAGCAGCCCCATCCCCAggg > 2:417400/1‑150 (MQ=255) gcgcgGATCACCGCGGGCATACTGTCGATCTG‑AAAAATAAAGCCGGAAAGCATAATCGACGGCAGAAAAGCGGCGTTCAGGGCGACCTGAGCGGCATTGAACTGGTTGCGGGTAATCGTGGAAATCAGCAGCCCCATCCCCAGGGTACTg > 1:1109385/1‑150 (MQ=255) cgcgGATCACCGCGGGCATACTGTCGATCTG‑AAAAATAAAGCCGGAACGCATAATCGACGGCAGAAAAGCGGCGTTCAGGGCGACCTGAGCGGCATTGATCTGGTTGCGGGTAATCGTGGAAATCAGCAGCCCCAACCCCAGGGTACTGa > 1:10434/1‑150 (MQ=255) cgGATCACCGCGGGCATACTGTCGATCTG‑AAAAATAAAGCCGGAAAGCATAATCGACGGCAGAAAAGCGGCGTTCAGGGCGACCTGAGCGGCATTGAACTGGTTGCGGGTAATCGTGGAAATCAGCAGCCCCATCCCCAGGGTACTGAGt > 2:47687/1‑150 (MQ=255) ggATCACCGCGGGCATACTGTCGATCTGAAAAAATACAGCCGGAAAGCATAATCGACGGCAGAAAAGCGGCGTTCAGGGCGACCTGAGCGGCATTGAACTGGGTGCGGGTAATCGTGGAAATCAGCAGCCCCATCCCCAGGGTACTGAGt < 1:998653/150‑1 (MQ=255) ggATCACCGCGGGCATACTGTCGATCTG‑AAAAATACAGCCGGAAAGCATAATCGACGGCAGAAACGCCGCGGTCAGGGCGACCTGAGCGGCATTGAACTGGTTGCGGGTAATCGTGGAAATCAGCAGCCCCATCCCCAGGGTACTGAGTa < 2:36856/150‑1 (MQ=255) cACCGCGGGCATACTGTCGATCTG‑AAAAATAAAGCCGGAAAGCATAATCGACGGCAGAAAAGCGGCGTTCAGGGCGACCTGAGCGGCATTGAACTGGTTGCGGGTAATCGTGGAAATCAGCAGCCCCATCCCCAGGGAACTGAGTaaaaa > 2:1197032/1‑150 (MQ=255) cGATCTG‑AAAAATAAATCCGTAAATCATAATCGATGGCAGAAAAGCGGCGTTCAGGGCGACCTGAGCGGCATTGAACTGGTTGCGGGTAATCGTGGAAATCAGCAGCCCCATCCCCAGGGTACTGAGTAAAAACAGGCTGGAGATaaaaa < 2:408848/150‑1 (MQ=255) cGATCTG‑AAAAATAAAGCCGGAAAGCATAATCGACGGCAGAAAAGCGGCGTTCAGGGCGACCTGAGCGGCATTGAACTGGTTGCGGGTAATCGTGGAAATCAGCAGCCCCATCCCCAGGGTACTGAGTAAAAACAGGCTGGAGATaaaaa < 2:1094314/150‑1 (MQ=255) aTCTG‑AAAAATAAAGCCGGAAAGCATCAGCGAGTGCAGAATAGCGGCGTTCAGGGCGACCTGAGCGGCATTGAACTGGTTGCGGGTAATCGTGGAAATCAGCAGCCCCATCCCCAGGGTACTGAGTAAAAACAGGCTGGAGATAAAAAAc < 1:902822/150‑1 (MQ=255) aTCTG‑AAAAATAAAGCCGGAAAGCATAATCGACGGCAGAAAAGCGGCGTTCAGGGCGACCTGAGCGGCATTGAACTGGTTGCGGGTAATCGTGGAAATCAGCAGCCCCATCCCCAGGGTACTGAGTAAAAACAGGCTGGAGATAAAAAAc < 1:1127641/150‑1 (MQ=255) tCTG‑AAAAATAAAGCCGGAAATCATAATCGACGGCAGAAAAGCGGCGTTCAGGGCGACATGAGCGTCATTGAACTGGTTGCGGGTAATCGTGGAAATCAGCAGCCCCATCCCCAGCGTACTGAGTAAAAACAGGCTGGAGATAAAAAACa < 2:639978/150‑1 (MQ=255) cTG‑AAAAATAAAGCCGGAAAGCATAATCGACGGCAGAAAAGCGGCGTTCAGGGCGACCTGAGCGGCATTGAACTGGTTGCGGGTAATCGTGGAAATCAGCAGCCCCATCCCCAGGGTACTGAGTAAAAACAGGCTGGAGATAAAAAACAg > 1:912847/1‑150 (MQ=255) aaaaaTAAAGCCGGAAAGCATAATCGACGGCAGAAAAGCGGCGTTCAGGGCGACCTGAGCGGCATTGAACTGGTTGCGGGTAATCGTGGAAATCAGCAGCCCCATCCCCAGGGTACTGAGGAAAAACAGGCTGGAGATaaaaaaaaaaaa > 2:130120/1‑144 (MQ=255) aaTAAAGCCGGAAAGCATAATCGACGGCAGAAAAGCGGCGTTCAGGGCGACCTGAGCGGCATTGAACTGGTTGCGGGTAATCGTGGAAATCAGCAGCCCCATCCCCAGGGTACTGAGTAAAAACAGGCTGGAGATAAAAACCAGAATcag > 2:878709/1‑150 (MQ=255) tAAAGCCGGAAAGCATAATCGACGGCAGAAAAGCGGCGTTCAGGGCGACCTGAGCGGCATTGAACTGGTTGCGGGTAATCGTGTAAATCAGCAGCCCCATCCCCAGGGTACTGAGTAAAAACAGGCGGGAGATAAAAAACAGAATcagcc > 2:1207295/1‑149 (MQ=255) ccGGAAAGCATAATCGACGGCAGAAAAGCGGCGTTCAGGGCGACCTGAGCGGCATTGAACTGGTTGCGGGTAATCGTGGAAATCAGCAGCCCCATCCCCAGGGTACTGAGTAAAAACAGGCTGGAGATAAAAAACAGAATCAGCAGCGAc > 2:1286730/1‑150 (MQ=255) ggAAAGCATAATCGACGGCAGAAAAGCGGCGTTCAGGGCGACCTGAGCGGCATTGAACTGGTTGCGGGTAATCGTGGAAATCAGCAGCCCCATCCCCAGGGTACTGAGTAAAAACAGGATGGAGATAAAAAACAGAATCAGCAGCGcccc > 1:131654/1‑150 (MQ=255) cATAATCGACGGCAGAAAAGCGGCGTTCAGGGCGACCTGAGCGGCATTGAACTGGTTGCGGGTAATCGTGGAAATCAGCAGCCCCATCCCCAGGGTACTGAGTAAAAACAGGCTGGAGATAAAAAACAGAATCAGCAGCGACCCGCGATa > 1:1106318/1‑150 (MQ=255) tAATCGACGGCAGAAAAGCGGCGTTCAGGGCGACCTGAGCGGCATTGAACTGGTTGCGGGTAATCGTGGAAATCAGCAGCCCCATCCCCAGGGTACTGAGTAAAAACAGGCTGGAGATAAAACACAGAATCAGCAGCGCCCCGCGATACg > 1:1151465/1‑150 (MQ=255) aTCGACGGCAGAAAAGCGGCGTTCAGGGCGACCTGAGCGGCATTGAACTGGTTGCGGGTAATCGTGGAAATCAGCAGCCCCATCCCCAGGGTACTGAGTAAAAACAGGCGGGAGATAAAAAACAGAATCAGCAGCGACCCGCGATACGGc < 1:126141/150‑1 (MQ=255) aTCGACGGCAGAAAAGCGGCGTTCAGGGCGACCTGAGCAGCATTGAACTGGTTGCGGGTAATCGTGGAAATCAGCAGCCCCATCCCCAGGGTACTGAGTAAAAACAGGCTGGAGATAAAAAACAGAATCAGCAGCGACCCGCGATACGGc < 2:141314/150‑1 (MQ=255) tCGACGGCAGAAAAGCGGCGTTCAGGGCGACCTGAGCGGCATTGAACTGGTTGCGGGTAATCGTGGAAATCAGCAGCCCCATCCCCAGGGTACTGAGTAAAAACAGGCTGGAGATAAAAAACAGAATCAGCAGCGACCCGCGATACGGCa < 1:716744/150‑1 (MQ=255) aCGGCAGAAAAGCGGCGTTCAGGGCGACCTGAGCGGCATTGAACTGGTTGCGGGTAATCGTGGAAATCAGCAGCCCCATCCCCAGGGTACTGAGTAAAAACAGGCTGGAGATATAAAACAGAATCAGCAGCGCCGCGCGATACGGCCCGc > 1:230970/1‑150 (MQ=255) cAGAAAAGCGGCGTTCAGGGCGACCTGAGCGGCATTGAACTGGTTGCGGGTAATCGTGGAAATCAGCAGCCCCATCCCCAGGGTACTGAGTAAAAACAGGCTGGAGATAAAAAACAGAATCAGCAGCGACCCGCGATACGGCACGCCgag < 1:756499/150‑1 (MQ=255) cggcgTTCAGGGCGACCTGAGCGGCATTGAACTGGTTGCGGGTAATCGTGGAAATCAGCAGCCCCATCCCCAGGGTACTGAGTAAAAACAGGCTAGAGATAAAAAACAGAATCAGCAGCGACCCGCGATACGGCACGCCGAGAATaatcc > 2:708196/1‑147 (MQ=255) gTTCAGGGCGACCTGAGCGGCATTGAACTGGTTGCGGGTAATCGTGGAAATCAGCAGCCCCATCCCCAGGGTACTGAGTAAAAACAGGCTGGAGATAAAAAACAGAATCAGCAGCGACCCGCGATACGGCACGCCGAGAATAAACACTGa < 1:417400/150‑1 (MQ=255) ggCGACCTGAGCGTCATTGAACTGGTTGCGGGTAATCGGGTAAATCAGCAGCCCCATCCCCAGGGTACTGAGTAAAAACAGGCTGGAGATAAAAAACAGAATCAGCAGCGACCCGCGATACGGCACGCCGAGAATAAACACTGACACCAg < 2:711019/150‑1 (MQ=255) cGACCTGAGCGGCATTGAACTGGTTGCGGGTAATCGTGGAAATCAGCAGCCCCATCCCCAGGGTACTGAGTAAAAACAGGCTGGAGATAAAAAACAGAATCAGCAGCGACCCGCGATACGGCACGCCGAGAATAAACACTGACACCAGCa < 2:912847/150‑1 (MQ=255) cGACCTGAGCGGCATTGAACTGGTTGCGGGTAATCGTGGAAATCAGCAGCCCCATCCCCAGGGTACTGAGTAAAAACAGGCTGGAGATAAAAAACAGAATCAGCAGCGACCCGCGATACGGCACGCCGAGAATAAACACTGACACCAGCa < 1:855157/150‑1 (MQ=255) gACCTGAGCGGCATTGAACTGGTTGCGGGTAATCGTGGAAATCAGCAGCCCCATCCCCAGGGTACTGAGTAAAAACAGGCTGGAGATAAAAAACAGAATCAGCAGCGACCCGCGATACGGCACGCCGAGAATAAACAATGACACCAGCAt > 1:650660/1‑150 (MQ=255) | CCGGCGAGGAACAGGCTTTGCAGGGTGCTGACGAAATAACGAGCGGGAATAATGTACGTCACCGCGCGGATCACCGCGGGCATACTGTCGATCTG‑AAAAATAAAGCCGGAAAGCATAATCGACGGCAGAAAAGCGGCGTTCAGGGCGACCTGAGCGGCATTGAACTGGTTGCGGGTAATCGTGGAAATCAGCAGCCCCATCCCCAGGGTACTGAGTAAAAACAGGCTGGAGATAAAAAACAGAATCAGCAGCGACCCGCGATACGGCACGCCGAGAATAAACACTGACACCAGCAT > NC_000913/826222‑826517 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |