New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4281812 =157 (2.100)7 (0.100) 6/274 5.2 4.7% coding (1264/1293 nt) yjcF pentapeptide repeats protein
?NC_000913 4281841 = 136 (1.950)coding (1235/1293 nt) yjcF pentapeptide repeats protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CAGGGAATGGGTATTACCATTCTCCGTGGTGAGGAAAATATCTCCATTAATAGTGATATCCTGGTAACACTACAGAAATTCTTTGAAGAAGATTGTGCCACTCATACTGGCATGTCACAAACTGAGGATAATCTTCATGCAGTCGCTATGAAGATTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4281968‑4281812
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgaagattaTCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCTCATCGAAA  >  NC_000913/4281841‑4281987
                                                                                                                                                                                                                                                                                                                
CAGGGAATGGGTATTACCATTCTCCGTGGTGAGGAAAATATCTCCATTAATAGTGATATCCTGGTAACACTACAGAAATTCTTTGAAGAAGATTGTGCCACTCATACTGGCATGTCACAAACTGAGGATAATCTTCATGCAGTCGCTAT                                                                                                                                                             <  2:38146/149‑1
CAGGGAATGGGTATTACCATTCTCCGTGGTGAGGAAAATATCTCCATTAATAGTGATATCCTGGTAACACTACAGAAATTCTTTGAAGAAGATTGTGCCACTCATACTGGCATGTCACAAACTGAGGATAATCTTCATGCAGTCGCTAT                                                                                                                                                             >  2:1122325/1‑149
 AGGGAATGGGTATTACCATTCTCCGTGGTGAGGAAAATATCTCCATTAATAGTGATATCCTGGTAACACTACAGAAATTCTTTGAAGAAGATTGTGCCACTCATACTGGCATGTCACAAACTGAGGATAATCTTCATGCAGTCGCTATG                                                                                                                                                            >  2:390227/1‑149
  GGGAATGGGTATTACCATTCTCCGTGGTGAGGAAAATATCTCCATTAATAGTGATATCCTGGTAACACTACAGAAATTCTTTGAAGAAGATTGTGCCACTCATACTGGCATGTCACAAACTGAGGATAATCTTCATGCAGTCGCTA                                                                                                                                                              <  1:228618/146‑1
  GGGAATGGGTATTACCATTCTCCGTGGTGAGGAAAATATCTCCATTAATAGTGATATCCTGGTAACACTACAGAAATTCTTTGAAGAAGATTGTGCCACTCATACTGGCATGTCACAAACTGAGGATAATCTTCATGCAGTCGCTA                                                                                                                                                              >  2:228618/1‑146
    GAATGGGTATTACCATTCTCCGTGGTGAGGAAAATATCTCCATTAATAGTGATATCCTGGTAACACTACAGAAATTCTTTGAAGAAGATTGTGCCACTCATACTGGCATGTCACAAACTGAGGATAATCTTCATGCAGTCGCTATGAAG                                                                                                                                                         >  1:626373/1‑149
        GGGTATTACCATTCTCCGTGGTGAGGAAAATATCTCCATTAATAGTGATATCCTGGTAACACTACAGAAATTCTTTGAAGAAGATTGTGCCACTCATACTGGCATGTCACAAACTGAGGATAATCTTCATGCAGTCGCTATGAAGATTA                                                                                                                                                     <  2:249877/149‑1
         GGTATTACCATTCTCCGTGGTGAGGAAAATATCTCCATTAATAGTGATATCCTGGTAACACTACAGAAATTCTTTGAAGAAGATTGTGCCACTCATACTGGCATGTCACAAACTGAGGATAATCTTCATGCAGTCGCTATGAAGATTA                                                                                                                                                     <  1:325446/148‑1
         GGTATTACCATTCTCCGTGGTGAGGAAAATATCTCCATTAATAGTGATATCCTGGTAACACTACAGAAATTCTTTGAAGAAGATTGTGCCACTCATACTGGCATGTCACAAACTGAGGATAATCTTCATGCAGTCGCTATGAAGATTA                                                                                                                                                     >  2:325446/1‑148
                                                                          GAAATTCTTTGAAGAAGATTGTGCCACTCATACTGGCATGTCACAAACTGAGGATAATCTTCATGCAGGCGCTATGAAGATTATCATAAGTTTGTGACATGCCAGTATGAGTGGCACCTTCTTCTTAAAAGAATTTCGGGAGGGTTACC                                                                                   >  2:196802/1‑149
                                                                                                             GCATGTCACAAACTGAGGATAATCTTCATGCAGTCGCTATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTCACC                                                >  1:884191/1‑149
                                                                                                              CATGTCACAAACTGAGGATAATCTTCATGCAGTCGCTATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTCACCA                                               >  2:630932/1‑149
                                                                                                                            AGGATAATCTTCATGCAGTCGCTATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTAATAATGGAGATATTTTCCTCACCACGGAGAATGGTAAT                                 >  2:725194/1‑149
                                                                                                                              GATAATCTTCATGCAGTCGCTATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATAC                               >  2:929306/1‑149
                                                                                                                              GATAATCTTCATGCAGTCGCTATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATAC                               >  1:72725/1‑149
                                                                                                                                   TCTTCATGCAGTCGCTATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTTTTACCAGGATAACACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATT                          >  1:1062717/1‑149
                                                                                                                                                   ATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCT          >  1:266572/1‑149
                                                                                                                                                   ATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCT          >  2:701208/1‑149
                                                                                                                                                    TGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCTC         >  2:1182979/1‑149
                                                                                                                                                    TGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCTC         >  1:271810/1‑149
                                                                                                                                                    TGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCTC         >  1:1104400/1‑149
                                                                                                                                                      AAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCTCAT       <  2:1113697/149‑1
                                                                                                                                                        GATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCTCATCG     >  2:231687/1‑149
                                                                                                                                                        GATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCTCATCG     >  1:533100/1‑149
                                                                                                                                                           TATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCTCATCGAAA  <  1:920120/149‑1
                                                                                                                                                           TATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCTCATCGAAA  <  2:328027/149‑1
                                                                                                                                                           TATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCTCATCGAAA  <  2:746297/149‑1
                                                                                                                                                           TATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCTCATCGAAA  <  1:1029492/149‑1
                                                                                                                                                                                                                                                                                                                
CAGGGAATGGGTATTACCATTCTCCGTGGTGAGGAAAATATCTCCATTAATAGTGATATCCTGGTAACACTACAGAAATTCTTTGAAGAAGATTGTGCCACTCATACTGGCATGTCACAAACTGAGGATAATCTTCATGCAGTCGCTATGAAGATTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4281968‑4281812
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgaagattaTCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCTCATCGAAA  >  NC_000913/4281841‑4281987

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.