| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4530007 | 397 (1.010) | 3 (0.010) | 3/266 | NT | 0.75% | coding (237/1314 nt) | sgcC | putative PTS system EIIC permease component |
| ? | NC_000913 | = 4530034 | 410 (1.090) | coding (210/1314 nt) | sgcC | putative PTS system EIIC permease component | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CGTACCCGTAATGGCGTAGTGCCAGTAATTGTAAATATCGACGTTCATCGTTTTGGTCAGACGGGTGACCAGCATGGCGACATTGAGAAGAAAAATAACTGGGATAATCATGGCGCCAATGGCTGTCGCATAACCAACGCCGGAGGCAGGGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4529854‑4530007‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcctAGCCCTGCATGTCTTTGACGTTGGCGCAGGCCCTGCCTCCGGCGTTGGTTATGCGACAGCCATTGGCGCCATGATTATCCCAGTTATTTTTCTTCTCAATGTCGCCATGCTGGTCACCCGTCTGACCAAAACGATGAACGTCGATATTT < NC_000913/4530034‑4529886 CGTACCCGTAATGGCGTAGTGCCAGTAATTGTAAATATCGACGTTCATCGTTTTGGTCAGACGGGTGACCAGCATGGCGACATTGAGAAGAAAAATAACTGGGATAATCATGGCGCCAATGGCTGTCGCATAACCAACGCCGGAGGCAGG > 1:2109382/1‑150CGTACCCGTAATGGCGTAGTGCCAGTAATTGTAAATATCGACGTTCATCGTTTTGGTCAGACGGGTGACCAGCATGGCGACATTGAGAAGAAAAATAACTGGGATAATCATGGCGCCAATGGCTGTCGCATAACCAACGCCGGAGGCAGG < 1:5198445/150‑1CGTACCCGTAATGGCGTAGTGCCAGTAATTGTAAATATCGACGTTCATCGTTTTGGTCAGACGGGTGACCAGCATGGCGACATTGAGAAGAAAAATAACTGGGATAATCATGGCGCCAATGGCTGTCGCATAACCAACGCCGGAGGCAGG < 2:536765/150‑1 GTACCCGTAATGGCGTAGTGCCAGTAATTGTAAATATCGACGTTCATCGTTTTGGTCAGACGGGTGACCAGCATGGCGACATTGAGAAGAAAAATAACTGGGATAATCATGGCGCCAATGGCTGTCGCATAACCAACGCCGGAGGCAGGG > 2:4416975/1‑150 GTACCCGTAATGGCGTAGTGCCAGTAATTGTAAATATCGACGTTCATCGTTTTGGTCAGACGGGTGACCAGCATGGCGACATTGAGAAGAAAAATAACTGGGATAATCATGGCGCCAATGGCTGTCGCATAACCAACGCCGGAGGCAGGG > 2:4416981/1‑150 TACCCGTAATGGCGTAGTGCCAGTAATTGTAAATATCGACGTTCATCGTTTTGGTCAGACGGGTGACCAGCATGGCGACATTGAGAAGAAAAATAACTGGGATAATCATGGCGCCAATGGCTGTCGCATAACCAACGCCGGAGGCAGGGC < 2:833352/150‑1 TACCCGTAATGGCGTAGTGCCAGTAATTGTAAATATCGACGTTCATCGTTTTGGTCAGACGGGTGACCAGCATGGCGACATTGAGAAGAAAAATAACTGGGATAATCATGGCGCCAATGGCTGTCGCATAACCAACGCCGGAGGCAGGGC < 1:515420/150‑1 TACCCGTAATGGCGTAGTGCCAGTAATTGTAAATATCGACGTTCATCGTTTTGGTCAGACGGGTGACCAGCATGGCGACATTGAGAAGAAAAATAACTGGGATAATCATGGCGCCAATGGCTGTCGCATAACCAACGCCGGAGGCAGGGC < 2:833219/150‑1 TACCCGTAATGGCGTAGTGCCAGTAATTGTAAATATCGACGTTCATCGTTTTGGTCAGACGGGTGACCAGCATGGCGACATTGAGAAGAAAAATAACTGGGATAATCATGGCGCCAATGGCTGTCGCATAACCAACGCCGGAGGCAGGGC < 2:3578542/150‑1 CCCGTAATGGCGTAGTGCCAGTAATTGTAAATATCGACGTTCATCGTTTTGGTCAGACGGGTGACCAGCATGGCGACATTGAGAAGAAAAATAACTGGGATAATCATGGCGCCAATGGCTGTCGCATAACCAACGCCGGAGGCAGGGCCT < 1:5351378/150‑1 CGACGTTCATCGTTTTGGTCAGACGGGTGACCAGCATGGCGACATTGAGAAGAAAAATAACTGGGATAATCATGGCGCCAATGGCTGTCGCATAACCAACGCCGGAGGCAGGGCCTAGCCCTGCATGTCTTTGACGTTGGCGCAGGCCCT < 1:2866790/150‑1 ATAATCATGGCGCCAATGGCTGTCGCATAACCAACGCCGGAGGCAGGGCCTAGCCCTGCATGTCTTTGACGTTGGCGCAGGCCCTGCC > 1:4671603/1‑88 ATAATCATGGCGCCAATGGCTGTCGCATAACCAACGCCGGAGGCAGGGCCTAGCCCTGCATGTCTTTGACGTTGGCGCAGGCCCTGCC < 2:4671603/88‑1 GGCCTAGCCCTGCATGTCTTTGACGTTGGCGCAGGCCCTGCCTCCGGCGTTGGTTATGCGACAGCCATTGGCGCCATGATTATGCCAGTTATTTTTCTTCTCAATGTCGCCATGCTGGTCACCCGTCTGACCAAAACGATGAACGTCGAT < 2:2774830/150‑1 GCCTAGCCCTGCTTGTCTTTGACGTTGGCGCAGGCCCTGCCTCCGGCGTTGGTTATGCGACAGCCTTTGGCGCCTTTTTTATCCCTTTTATTTTTCTTCTCAATGTCGCCATGCTGGTCACCCGTCTGACCAAAACTATGAACGTCGATA < 1:2665746/150‑1 GCCTAGCCCTGCATGTCTTTGACGTTGGCGCAGGCCCTGCCTCCGGCGTTGGTTATGCGACAGCCATTGGCGCCATGATTATCCCAGTTATTTTTCTTCTCAATGTCGCCATGCTGGTCACCCGTCTGACCAAAACGATGAACGTCGATA > 2:4797467/1‑150 GCCTAGCCCTGCATGTCTTTGACGTTGGCGCAGGCCCTGCCTCCGGCGTTGGTTATGCGACAGCCATTGGCGCCATGATTATCCCAGTTATTTTTCTTCTCAATGTCGCCATGCTGGTCACCCGTCTGACCAAAACGATGAACGTCGATA > 2:1337545/1‑150 GCCTAGCCCTGCATGTCTTTGACGTTGGCGAAGGCCCTGCCTCCGGCGTTGGTTATGCGACAGCCATTGGCGCCATGATTATCCCAGTTATATTTCTTCTCAATTTCGCCATGCTGGTCACCCGACTGACCAAAACGATGAACGTCGATA > 1:3631195/1‑150 CCTAGCCCTGCATGTCTTTGACGTTGGCGCAGGCCCTGCCTCCGGCGTTGGTTATGCGACAGCCATTGGCGCCATGATTATCCCAGTTATTTTTCTTCTCAATGTCGCCATGCTGGTCACCCGTCTGACCAAAACGATGAACGTCGATAT > 2:5254633/1‑150 CTAGCCCTGCATGTCTTTGACGTTGGCGCAGGCCCTGCCTCCGGCGTTGGTTATGCGACAGCCATTGGCGCCATGATTATCCCAGTTATTTTTCTTCTCAATGTCGCCATGCTGGTCACCCGTCTGACCAAAACGATGAACGTCGATATT > 2:2561878/1‑150 TAGCCCTGCATGTCTTTGACGTTGGCGCAGGCCCTGCCTCCGGCGTTGGTTATGCGACAGCCATTGGCGCCATGATTATCCCAGTTATTTTTCTTCTCAATGTCGCCATGCTGGTCACCCGTCTGACCAAAACGATGAACGTCGATATTT > 2:115100/1‑150 CGTACCCGTAATGGCGTAGTGCCAGTAATTGTAAATATCGACGTTCATCGTTTTGGTCAGACGGGTGACCAGCATGGCGACATTGAGAAGAAAAATAACTGGGATAATCATGGCGCCAATGGCTGTCGCATAACCAACGCCGGAGGCAGGGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4529854‑4530007‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcctAGCCCTGCATGTCTTTGACGTTGGCGCAGGCCCTGCCTCCGGCGTTGGTTATGCGACAGCCATTGGCGCCATGATTATCCCAGTTATTTTTCTTCTCAATGTCGCCATGCTGGTCACCCGTCTGACCAAAACGATGAACGTCGATATTT < NC_000913/4530034‑4529886 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |