New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	270109 =	68 (0.860)	4 (0.050)	4/262	NT	5.9%	coding (74/894 nt)	perR	CP4‑6 prophage; putative DNA‑binding transcriptional regulator
	?	NC_000913	270171 =	NA (NA)					coding (12/894 nt)	perR	CP4‑6 prophage; putative DNA‑binding transcriptional regulator

TGTTCTGAGGTGAGCATATCACCTCTGTTCAGGTGGCCAAATTCAGTAAACCACTTCATCCCTAGTGAAAAGGATTCATGAATGAAGCTCTTAGCAAAAGCACCTCTAAATCTGTTACGCGCCTTTGAAGCGGCTGGTCGTACCGGAGCTTTTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/270263‑270109 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcttttgcTAAGAGCTTCATTCATGAATCCTTTTCACTAGGGATGAAGTGGTTTACTGAATTTGGCCACCTGAACAGAGGTGATATGCTCACCTCAGAACAACACAGGTGTCATAATGAAAAAAAGAAATTTCAGCGCAGAGTTTAAACGCGAATCC  >  NC_000913/270171‑270319                                                                                                                                                                                                                                                                                                                  TGTTCTGAGGTGAGCATATCACCTCTGTTATGGTGGCCAAATTCAGTAAACCACTTCATCCCTAGTGAAAAGGATTCATGAATGAAGCTCTTAGCAAAAGCACCTCTAAATCTGTTAGGCGGCTTTGAAGCGGCTGGTCGTTCCGGAGCT                                                                                                                                                            >  1:648559/1‑150      TGAGGTGGGCATATCACCTCTGTTCAGGTGGCCAAATTCAGTAAACCACTTCATCCCTAGTGAAAAGGATTCATGAATGAAGCTCTTAGCAAAAGCACCTCTAAATCTGTTACGCGCCTTTGAAGCGGCTGGTCGTACCGGAGCTTTTGC                                                                                                                                                       <  1:191360/150‑1      TGAGGTGAGCATATCACCTCTGTTCAGGTGGCCAAATTCAGTAAACCACTTCATCCCTAGTGAAAAGGATTCATGAATGAAGCTCTTAGCAAAAGCACCTCTAAATCTGTTACGCGCCTTTGAAGCGGCTGGTCGTACCGGAGCTTTTGC                                                                                                                                                       <  1:1082159/150‑1      TGAGGTGAGCATATCACCTCTGTTCAGGTGGCCAAATTCAGTAAACCACTTCATCCCTAGTGAAAAGCATTCATGAATGAAGCTCTTAGCAAAAGCACCTCTAAATCTGTTACGCGCCTTTGAAGCGGCTGGTCGTACCGGAGCTTTTGC                                                                                                                                                       >  1:193750/1‑150                                                                                       GCTCTTAGCAAAAGCACCTCTAAATCTGTTACGCGCCTTTGAAGCGGCTGGTCGTACCGGAGCTTTTGCTAAGAGCTTCATTCATGAATCCTTTTCACTAGGGATGAAGTGGTTTACTGAATTTGGCCACCTGAACAGAGGTGATATGCT                                                                      >  2:948752/1‑150                                                                                          CTTAGCAAAAGCACCTCTAAATCTGTTACGCGCCTTTGAAGCGGCTGGTCGTACCGGAGCTTTTGCTAAGAGCTTCATTCATGAATCCTTTTCACTAGGGATGAAGTGGTTTACTGAATTTGGCCACCTGAACAGAGGTGATATGCTCAC                                                                   >  1:1002475/1‑150                                                                                             AGCAAAAGCACCTCTAAATCTGTTACGCGCCTTTGAAGCGGCTGGTCGTACCGGAGCTTTTGCTAAGAGCTTCATTCATGAATCCCTTTCACTAGGGATGAAGTGGTTTACTGAATTTGGCCACCTGAACAGAGGTGATATGCTCACCTC                                                                >  1:54064/1‑150                                                                                                   AGCACCTCTAAATCTGTTACGCGCCTTTGAAGCGGCTGGTCGTACCGGAGCTTTTGCTAAGAGCTTCATTCATGAATCCTTTTCACTAGGGATGAAGTGGTTTACTGAATTTGGCCACCTGAACAGAGGTGATATGCTCACCTCAGAACA                                                          >  2:20042/1‑150                                                                                                                                                     CTTTTGCTAAGAGCTTCATTCATGAATCCTTTTCACTAGGGATGAAGTGGTTTACTGAATTTGGCCACCTGAACAGAGGTGATATGCTCACCTCAGAACAACACAGGTGTCATAATGAAAAAAAGAAATTTCAGCGCAGAGTTTAAACGC        >  2:489002/1‑150                                                                                                                                                         TGCTAAGAGCTTCATTCATGAATCCTTTTCACTAGGGATGAAGTGGTTTACTGAATTTGGCCACCTGAACAGAGGTGATATGCTCACCTCAGAACAACACAGGTGTCATAATGAAAAAAAGAAATTTCAGCGCAGAGTTTAAACTCGAAT    >  2:164390/1‑150                                                                                                                                                          GCTAAGAGCTTCATTCATGAATCCTTTTCACTAGGGATGAAGTGGTTTACTGAATTTGGCCACCTGAACAGAGGTGATATGCTCACCTCAGAACAACACAGGTGTCATAATGAAAAAAAGAAATTTCAGCGCAGAGTTTAAACGCGAATC   >  2:1047134/1‑150                                                                                                                                                           CTAAGAGCTTCATTCATGAATCCTTTTCACTAGGGTTGAAGTGGTTTACTGAATTTGGCCACCTGAACAGAGGTGATATGCTCACCTCAGAACAACACAGGTGTCATAATGAAAAAAAGAAATTTCAGCGCAGAGTTTAAACGCGAATCC  <  2:1018357/150‑1                                                                                                                                                           CTAAGAGCTTCATTCATGAATCCTTTTCACTAGGGATGAAGTGGTTTACTGAATTTGGCCACCTGAACAGAGGTGATATGCTCACCTCAGAACAACACAGGTGTCATAATGAAAAAAAGAAATTTCAGCGCAGAGTTTAAACGCGAATCC  <  1:37798/150‑1                                                                                                                                                                                                                                                                                                                  TGTTCTGAGGTGAGCATATCACCTCTGTTCAGGTGGCCAAATTCAGTAAACCACTTCATCCCTAGTGAAAAGGATTCATGAATGAAGCTCTTAGCAAAAGCACCTCTAAATCTGTTACGCGCCTTTGAAGCGGCTGGTCGTACCGGAGCTTTTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/270263‑270109 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcttttgcTAAGAGCTTCATTCATGAATCCTTTTCACTAGGGATGAAGTGGTTTACTGAATTTGGCCACCTGAACAGAGGTGATATGCTCACCTCAGAACAACACAGGTGTCATAATGAAAAAAAGAAATTTCAGCGCAGAGTTTAAACGCGAATCC  >  NC_000913/270171‑270319

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.