New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3905636 =	80 (1.010)	4 (0.060)	3/248	NT	5.3%	intergenic (‑39/+95)	bglF/bglG	fused beta‑glucoside‑specific PTS enzymes: IIA component/IIB component/IIC component/transcriptional antiterminator of the bgl operon
	?	NC_000913	3905688 =	72 (1.020)					intergenic (‑91/+43)	bglF/bglG	fused beta‑glucoside‑specific PTS enzymes: IIA component/IIB component/IIC component/transcriptional antiterminator of the bgl operon

GTAAAATTTCACCCGCAGAGATTATGTTTTTAGCCATAAATATAGAGCGCGTGCGCAAAGAACACTGAAATATTATTACTGAGTAAAGGATTGTTACCGCACTAAGCGGGCAAAACCTGAAAAAAATTGCTTGATTCACGTCAGGCCGTTTTTTTCAGGTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3905798‑3905636 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttttttcaggttttGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCC  >  NC_000913/3905688‑3905836                                                                                                                                                                                                                                                                                                                          GTAAAATTTCACCCGCAGAGATTATGTTTTTAGCCCTAAATATAGAGCGCGCGCGCAAAGAACACTTAAATATTATTACTGAGTAAAGGATTGTTACCGCACTAAGCGGGCAAAACCTGAAAAAACTTGCTTGATTCACGTCAGGCCGTT                                                                                                                                                                    <  2:826629/150‑1  TAAAATTTCAGCCGCAGAGATTATGTTTTTAGCCATAAATATAGAGCGCGTGCGCAAAGAACAGTGAAATATTATTACTGAGTAAAGGATTGTTACCGCACTAAGCGTGCAAAACCTGAAAAAAATTGCTTGATTCACGTCAGGCCGTTT                                                                                                                                                                   <  1:1112022/150‑1       TTTCACCCGCAGAGATTATGTTTTTAGCCATAAATATAGAGCGCGTGCGCAAAGAACACTGAAATATTATTACTGAGTAAAGGATTGTTACCGCACTAAGCGGGCAAAACCTGAAAAAAATTGCTTGATTCACGTCAGGCCGTTTTTTTC                                                                                                                                                              <  1:1227937/150‑1       TTTCACCCGCAGAGATTATGTTTTTAGCCATAAATATAGAGCGCGTGCGCAAAGAACACTGAAATATTATTACTGAGTAAAGGATTGTTACCGCACTAAGCGGGCAAAACCTGAAAAAAATTGCTTGATTCACGTCAGGCCGTTTTTTTC                                                                                                                                                              <  1:1315264/150‑1       TTTCACCCGAAGAGATTATGTTTTTAGACATAAATATAGAGCGCGTGCGCAAAGAACACTGAAATATTATTACTGAGTAAAGGATTGTTACCGCACTAAGCGGGCAAAACCTGAAAAAAATTGCTTGATTCACGTCAGGCCGTTTTTTTC                                                                                                                                                              <  1:1308202/150‑1        TTCACCCGCAGAGATTATGTTTTTAGCCATAAATATAGAGCGCGTGCGCAAAGAACACTGAAATATTATTACTGAGTAAAGGATTGTTACCGCACTAAGCGGGCAAAACCTGAAAAAAATTGCTTGATTCACGTCAGGCCGTTTTTTTCA                                                                                                                                                             <  2:615270/150‑1        TTCACCCGCAGAGATTATGTTTTTAGCCATAAATATAGAGCGCGTGCGCAAAGAACACTGAAATATTATTACTGAGTAAAGGATTGTTACCGCACTAAGCGGGCAAAACCTGAAAAAAATTGCTTGATTCACGTCAGGCCGTTTTTTTCA                                                                                                                                                             <  2:500623/150‑1              CGCAGAGATTATGTTTTTAGCCATAAATATAGAGCGCGTGCGCAAAGAACACTGAAATATTATTACTGAGTAAAGTATTGTTACCGCACTAAGCGGGCAAAACCTGAAAAAAATTGCTTGATTCACGTCAGGCCGTTTTTTTCAGGTTTT                                                                                                                                                       >  2:1182038/1‑150              CGCAGAGATTATGTTTTTAGCCATAAATATAGAGCGCGTGCGCAAAGAACACTGAAATATTATTACTGAGTAAAGGATTGTTACCGCACTAAGCGGGCAAAACCTGAAAAAAATTGCATGATTCACGGCAGGCCATTTTTTTCATGTTTT                                                                                                                                                       >  2:53066/1‑150                                                                                                           CGGGCAAAACCTGAAAAAAATTGCTTGATTCACGTCAGGCCGTTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATATTATTTCAGTGTTATTTGCGCACGCGCTCTATATTTATGGCTAAAGACATAATCT                                                          >  1:256743/1‑150                                                                                                                  AACCTGAAAAAAATTGCTTGATTCACGTCAGGCCGTTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGG                                                   >  2:335359/1‑150                                                                                                                    CCTGAAAAAAATTGCTTGATTCACGTCAGGCCGTTTTTTTCAGGTTTTGCCCTCATAGTCCGGTAACAAAACTTTACTCATTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGGCTAAAAACATAATCTATGCGGGTG                                                 >  1:27665/1‑150                                                                                                                    CCTGAAAAAAATTGCTTGATTCACGTCAGGCCGTTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTG                                                 >  1:845676/1‑150                                                                                                                                                      TTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAAT               >  1:1145317/1‑150                                                                                                                                                         TTTCAGGTTTTGCCCGCTTAGTGCGGTAACTATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACATTGATACTGCAAACCAATAAAAATGGC            <  2:713493/150‑1                                                                                                                                                         TTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCCCGCGCTCTATATTTATGGCTAAAATCATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGC            >  1:229582/1‑150                                                                                                                                                           TCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGA          >  1:206823/1‑150                                                                                                                                                            CAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGAAAAACAATAAAAATGGCGAT         >  2:215308/1‑150                                                                                                                                                              GGTTTTTCGCGCTTAGTGCGGTAACAATGCTTTACTCAGTAATAATATTTCAGTGTTCTTTGAGCACGCGCTCTATATTTATGTCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCC       <  2:869486/150‑1                                                                                                                                                                TTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGATATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGT     >  2:1060184/1‑150                                                                                                                                                                  TTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTC   <  2:1282778/150‑1                                                                                                                                                                   TGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCC  <  1:271247/150‑1                                                                                                                                                                                                                                                                                                                          GTAAAATTTCACCCGCAGAGATTATGTTTTTAGCCATAAATATAGAGCGCGTGCGCAAAGAACACTGAAATATTATTACTGAGTAAAGGATTGTTACCGCACTAAGCGGGCAAAACCTGAAAAAAATTGCTTGATTCACGTCAGGCCGTTTTTTTCAGGTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3905798‑3905636 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttttttcaggttttGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCC  >  NC_000913/3905688‑3905836

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.