New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1798794 =	45 (0.570)	3 (0.040)	3/266	NT	6.0%	coding (149/984 nt)	pheS	phenylalanine tRNA synthetase, alpha subunit
	?	NC_000913	1798908 =	51 (0.680)					coding (35/984 nt)	pheS	phenylalanine tRNA synthetase, alpha subunit

ACGACCTGGCAGAGAGACATCAATCGTTTCCGCCGCCAGACGCGCATTCAGTGCAGCGCTTTCCAGTTCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACATTATCTAACGCGGCAACATCTGACGCCTGGCTAATGGCCGCCTTCGCACTGGCAACCAGTTCTGCGAGATGTGAC  >  NC_000913/1798646‑1798940                                                                                                                                                     |                                                                                                                                                   gtacgtgagaatttcgagcacagcccgggaccaaaatggcaagtaaaatagcctgatgggataggctctaagtccaacgaaccagtgtcaccactgacacaatgaggaaaaccatgtcacatctcgcaaaactggttgccagtgcgaagg                                                                                                                                                   >  2:599082‑M1/149‑150 (MQ=255)  tacgtgagaatttcgagcacagcccgggaccaaaatggcaagtaaaatagcatgatgggataggctctaagtccaacgaaccagagtcaccactgacagaatgaggaaaaccatgtcacatctcgcagatctggttgccagtgcgaagtc                                                                                                                                                  <  1:197084‑M1/3‑3 (MQ=255)   acgtgagaatttcgagcacagcccgggaccaaaatggcaagtaaaatagcctgatgggataggctctaagtccaacgaaccagtgtcaccactgacacaatgaggaaaaccatgtcacatctcgcagaactggttgccagtgcgaaggcg                                                                                                                                                 <  2:69675‑M1/4‑1 (MQ=255)    cgtgagaatttcgagcacagcccgggaccaaaatggcaagtaatatagcctgttgggataggctctaagtccaacgaaccagtgtcaccactgacacaatgaggaaaaccatgtcacatctcgcagaactggttgccagtgcgaaggcgg                                                                                                                                                >  2:998996‑M1/146‑150 (MQ=255)    cgtgagaatttcgagcacagcccgggaccaaaatggcaagtaaaatagcctgatgggataggctctaagtccaacgaaccagtgtcaccactgacacaatgaggaaaaccatgtcacatctcgcagaactggttgccagtgcgaaggcgg                                                                                                                                                >  1:999433‑M1/146‑150 (MQ=255)     gtgagaatagcgagcacatcccgggaccaaaatggcaagtaaaatagcctgatgggataggctctaagtccaacgaaccagtgtcaccactgacacaatgaggaaaaccatgtcacatctcgcagaactggttgccagtgcgaaggcggc                                                                                                                                               >  1:247105‑M1/145‑150 (MQ=255)     ccTGGCAGAGAGACATCTATCGGTTCCGCCGCCAGACGCGCATTCAGTGCAGCGCTTTCCAGTTCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTggcggc                                                                                                                                               <  1:1160205/150‑1 (MQ=255)            gagagaCATCAATCGTTTCCGCCGCCAGACGCGCATTCAGTGCAGCGCTTTCCAGTTCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCAc                                                                                                                                        >  2:151118/1‑150 (MQ=255)                  cATCAATCGTTTCCGCCGCCAGACGTGCATTCAGTGCAGCGCTTTCCAGTTCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAggg                                                                                                                                  >  1:892259/1‑150 (MQ=255)                       aTCGTTTCCGCCGCCAGACGCGCATTCAGTGCAGCGCTTTCCAGTTCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGgtcgtc                                                                                                                             <  1:39779/150‑1 (MQ=255)                         cGTTTCCGCCGCCAGACGCGCATTCAGTGCAGCGCTTTCCAGTTCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGgtcgtgag                                                                                                                           >  1:996199/1‑147 (MQ=255)                          gTTTCCGCCGCCAGACGCGCATTCAGTGCAGCGCTTTCCAGTTCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATc                                                                                                                          <  2:1217250/150‑1 (MQ=255)                           tttCCGCCGCCAGACGCGCATTCAGTGCAGCGCTTTCCAGTTCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCCGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCt                                                                                                                         >  1:845603/1‑150 (MQ=255)                           tttCCGCCGCCAGACGCGCATTCAGTGCAGCGCTTTCCAGTTCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCt                                                                                                                         <  1:453262/150‑1 (MQ=255)                                gccgccAGACGCGCATTCAGTGCAGCGCTTTCCAGTTCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCGCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAgg                                                                                                                    <  2:605369/150‑1 (MQ=255)                                        caagtaaaatagcctgatgggataggctctaagtccaacgaaccagtgtcaccactgacacaatgaggaaaaccatgtcacatctcgcagaactggttgccagtgcgaaGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTg                                                                                                            <  2:329108‑M1/41‑1 (MQ=255)                                        aCGCGCATTCAGTGCAGCGCTTTCCAGTTCCGCGTTACGCGCATGCAGCGCCGGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACTCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTg                                                                                                            <  1:265075/150‑1 (MQ=255)                                           cgcATTCAGTGCAGCGCTTTCCAGTTCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGccc                                                                                                         >  2:1179247/1‑150 (MQ=255)                                                   gTGCAGCGCTTTCCAGTTCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTAc                                                                                                 <  2:314483/150‑1 (MQ=255)                                                   gTGCAGCGCTTTCCAGTTCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTAc                                                                                                 <  2:818181/150‑1 (MQ=255)                                                        gcgcTTTCCAGTTCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCaaa                                                                                            <  1:93526/150‑1 (MQ=255)                                                           cTTTCCAGTTCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAatat                                                                                         >  2:625079/1‑150 (MQ=255)                                                            tttCCAGTTCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACCCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTGTTTTACCCAAATAtt                                                                                        >  2:21280/1‑150 (MQ=255)                                                                       gCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCATTTTTACCCAAATATTCGACGCGcaca                                                                             >  1:12457/1‑150 (MQ=255)                                                                             cgcgCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCCCCTGCCGGCCGCTCGTCTGGCGGCAGCACACGCAGGGTCGGCCTCTGAAGGGATAAGTGCCCTTTGTTTCCCAAATATTCGACGCGCACTTTATCt                                                                       >  2:197084/1‑150 (MQ=255)                                                                             cgcgCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACATTATCt                                                                       <  1:1015443/150‑1 (MQ=255)                                                                               cgcATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCGTTTTTACCCAAATATTCGACGCGCACATTATCTaa                                                                     >  1:536126/1‑150 (MQ=255)                                                                                       gcgcCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACATTATCTAACGCGGCaa                                                             <  2:892411/150‑1 (MQ=255)                                                                                          ccTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGGCAGCTGAAGGGTTAAGTGCCCTGTTTTACCCAAATATTCGACGCGCACATTATCTACCGCGGCAACAt                                                          >  2:228462/1‑150 (MQ=255)                                                                                             gctgAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACATTATCTAACGCGGCAACATCTg                                                       >  2:313967/1‑150 (MQ=255)                                                                                             gctgAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACATTATCTAACGCGGCAACATCTg                                                       <  1:1335709/150‑1 (MQ=255)                                                                                                   ccTGCGCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCAAAATATTCGACGCGCACATTATCTAACGCGGCAACATCTGACGCCt                                                 <  1:1351513/150‑1 (MQ=255)                                                                                                         ctTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACATTATCTAACGCGGCAACATCTGACGCCTGGCTaa                                           >  2:1346552/1‑150 (MQ=255)                                                                                                             cGCTTCGTTGATATCCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACATTATCTAACGCGGCAACATCTGACGCCTGGCTAATGgc                                       <  2:1246409/150‑1 (MQ=255)                                                                                                             cGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGTAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACATTATCTAACGCGGCAACATCTGACGCCTGGCTAATGgc                                       <  2:1169781/150‑1 (MQ=255)                                                                                                               cTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACATTATCTAACGCGGCAACATCTGACGCCTGGCTAATGgccg                                     <  2:892259/150‑1 (MQ=255)                                                                                                                 tCGTTGATAACCGCACCAGCTGCCGGACGGTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACATTATCTAACGCGGCAACATCTGACGCCTGGCTAATGgccgcc                                   <  2:253447/150‑1 (MQ=255)                                                                                                                    ttGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACATTATCTAACGCGGCAACATCTGACGCCTGGCTAATGGCCGCCTTc                                >  1:1191497/1‑150 (MQ=255)                                                                                                                    gtcacatctcgcagaactggttgccagtgcgaaGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACATTATCTAACGCGGCAACATCTGACGCCTGGCTAATGGCCGCCTTc                                >  2:1125951‑M1/34‑150 (MQ=255)                                                                                                                     tGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACATTATCTAACGCGGCAACATCTGACGCCTGGCTAATGGCCGCCTTCg                               <  2:413213/150‑1 (MQ=255)                                                                                                                     tGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACATTATCTAACGCGGCAACATCTGACGCCTGGCTAATGGCCGCCTTCg                               >  2:537331/1‑150 (MQ=255)                                                                                                                      gATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACATTATCTAACGCGGCAACATCTGACGCCTGGCTAATGGCCGCCTTCGc                              >  1:289985/1‑150 (MQ=255)                                                                                                                        tAACCGCACCAGCTGCCGGACGCTCTTGTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACATTATCTAACGCGGCAACATCTGACGCCTGGCTAATGGCCGCCTTCGCAc                            <  1:1276243/150‑1 (MQ=255)                                                                                                                        catctcgcagaactggttgccagtgcgaaGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACATTATCTAACGCGGCAACATCTGACGCCTGGCTAATGGCCGCCTTCGCAc                            >  1:329108‑M1/30‑150 (MQ=255)                                                                                                                           ccGCACCAGCAGCCGGACGCTCTTCTGGCGGCAGCTCTCGCAGGGTCGTCATCTGATGGGGTAAGTGCCCTTTTTTACCCAAATATTGGACGCGCACATTATCTAACGCGGCAACATCTGACGCCTGGCTAATGGCCGCCTTCGCACTgg                         <  1:1196721/150‑1 (MQ=255)                                                                                                                                ccAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACATTATCTAACGCGGCAACATCTGACGCCTGGCTAATGGCCGCCTTCGCACTGGCAAcc                    <  1:1197759/150‑1 (MQ=255)                                                                                                                                    cTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACATTATCTAACGCGGCAACATCTGACGCCTGGCTAATGGCCGCCTTCGCACTGGCAACCAGtt                <  2:217132/150‑1 (MQ=255)                                                                                                                                      gCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACATTATCTAACGCGGCAACATCTGACGCCTGGCTAATGGCCGCCTTCGCACTGGCAACCAGTTCt              >  1:143751/1‑150 (MQ=255)                                                                                                                                      gCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACATTATCTAACGCGGCAACATCTGACGCCTGGCTAATGGCCGCCTTCGCACTGGCAACCAGTTCt              >  2:749065/1‑150 (MQ=255)                                                                                                                                         ggACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACATTATCTAACGCGGCAACATCTGACGCCTGGCTAATGGCCGCCTTCGCACTGGCAACCAGTTCTGCg           <  1:547791/150‑1 (MQ=255)                                                                                                                                         ggACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACATTATCTAACGCGGCAACATCTGACGCCTGGCTAATGGCCGCCTTCGCACTGGCAACCAGTTCTGCg           >  1:926067/1‑150 (MQ=255)                                                                                                                                            cGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACATTATCTAACGCGGCAACATCTGACGCCTGGCTAATGGCCGCCTTCGCACTGGCAACCAGTTCTGCgaga        >  1:605141/1‑150 (MQ=255)                                                                                                                                              ctctTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACATTATCTAACGCGGCAACATCTGACGCCTGGCTAATGGCCGCCTTCGCACTGGCAACCAGTTCTGCGAGAtg      >  2:43160/1‑150 (MQ=255)                                                                                                                                              ctctTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTGTTTTACCCAAATATTCGACGCGCACATTATCTAACGCGGCAACATCTGACGCCTGGCTAATGGCCGCCTTCGCACTGGCAACCAGTTCTGCGAGAtg      >  1:69675/1‑150 (MQ=255)                                                                                                                                                cttctGGCGGCAGCTCAAGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACATTATCTAACGCGGCAACATCTGACGCCTGGCTAATGGCCGCCTTCGCACTGGCATCCAGTTCTGCGAGAtgtg    <  1:182945/150‑1 (MQ=255)                                                                                                                                                  tctGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACATTATCTAACGCGGCAACATCTGACGCCTGGCTAATGGCCGCCTTCGCACTGGCACCCAGTTCTGCGAGATGTGAc  >  2:76014/1‑150 (MQ=255)                                                                                                                                                  tctGGCGGCAGCTCACGCAGGGACGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACATTATCTACCGCGGCAACATCTGACGCCTGGCTTATGGCCGCCTTCGCACTGGCACCCAGTTCTGCGAGAGGTGAc  >  2:814149/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                                   ACGACCTGGCAGAGAGACATCAATCGTTTCCGCCGCCAGACGCGCATTCAGTGCAGCGCTTTCCAGTTCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACATTATCTAACGCGGCAACATCTGACGCCTGGCTAATGGCCGCCTTCGCACTGGCAACCAGTTCTGCGAGATGTGAC  >  NC_000913/1798646‑1798940

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.