New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4035239 =	NA (NA)	4 (0.050)	3/274	NT	21.3%	intergenic (+86/‑292)	hemG/rrsA	protoporphyrin oxidase, flavoprotein/16S ribosomal RNA of rrnA operon
	?	NC_000913	4035278 =	15 (0.190)					intergenic (+125/‑253)	hemG/rrsA	protoporphyrin oxidase, flavoprotein/16S ribosomal RNA of rrnA operon

GGAGCAGGTGGCGAATTTCGCCCGAGAAATCGCCCATTTAACCGACAAACCGACGCTGAAATAAGCATAAAGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAA  >  NC_000913/4035090‑4035312                                                                                                                                                      |                                                                          ggAGCAGGTGGCGAATTTCGCCCGAGAAATCGCCCATTTAACCGACAAACCGACGCTGAAATAAGCATAAAGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGccacca                                                                           >  2:536059/1‑150 (MQ=255)  gAGCAGGTGGCGAATTTCGCCCGAGAAATCGCCCATTTAACCGACAAACCGACGCTGAAATAAGCATAAAGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCcaccac                                                                          >  2:42844/1‑150 (MQ=255)   aGCAGGTGGCGAATTTCGCCCGAGAAATCGCCCATTTAACCGACAAACCGACGCTGAAATAAGCATAAAGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACt                                                                         >  1:934911/1‑150 (MQ=255)    gCAGGTTGCGAATTTCGCCCGAGAAATCGCCCATTTAACCGACAAACCGACGCTGAAATAAGCATAAAGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTg                                                                        <  2:585449/150‑1 (MQ=255)    gCAGGTGGCGAATTTCGCCCGAGAAATCGCCCATTTAACCGACAAACCGACGCTGAAATAAGCAGAAAGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATCACTCCCTATAATGCGCCACCACTg                                                                        >  1:908739/1‑150 (MQ=255)        gTGGCGAATTTCGCCCGAGAAATCGCCCATTTAACCGACAAACCGACGCTGAAATAAGCATAAAGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGacac                                                                    >  2:1150835/1‑150 (MQ=255)        gTGGCGAATTTCGCCCGAGAAATCGCCCATTTAACCGACAAACCGACGCTGAAATAAGCATAAAGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGacac                                                                    >  1:1327308/1‑150 (MQ=255)        gTGGCGAATTTCGCCCGAGAAATCGCCCATTTAACCGACAAACCGACGCTGAAATAAGCATAAAGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGAGCCACCACTGacac                                                                    >  1:471066/1‑150 (MQ=255)        gTGGCGAATTTCGCCCGAGAAATCGCCCAATTAACAGACAAACCGACGCTGAAATAAGCATAAAGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTGTTGTCAGCACGCAATAACTCCATATAATGCGCCACCACTCacac                                                                    >  1:1003643/1‑150 (MQ=25)          ggCGAATTTCGCCCGAGAAATCGCCCATTTAACCGACAAACCGCCGCTGAAATAAGCATAAAGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGAAACgg                                                                  >  1:386780/1‑150 (MQ=255)          ggCGAATTTCGCCCGAGAAATCGCCCATTTAACCGACAAACCGACGCTGAAATAAGCATAAAGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACgg                                                                  >  2:692257/1‑150 (MQ=255)            cGAATTTCGCCCGAGAAATCGCCCATTTAACCGACAAACCGACGCTGAAATAAGCATAAAGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGaa                                                                >  1:648785/1‑150 (MQ=255)            cGAATTTCGCCCGAGAAATCGCCCATTTAACCGACAAACCGACGCTGAAATAAGCATAAAGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGaa                                                                <  1:743032/150‑1 (MQ=255)            cGAATTTCGCCCGAGAAATCGCCCATTTAACCGACAAACCGACGCTGAAATAAGCATAAAGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGaa                                                                >  2:393495/1‑150 (MQ=255)            cGAATTTCGCCCGAGAAATCGCCCATTTAACCGACAAACCGACGCTGAAATAAGCATAAAGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGaa                                                                >  1:925147/1‑150 (MQ=255)              aaTTTCGCCCGAGAAATCGCCCATTTAACCGACAAACCGACGCTGAAATAAGCATAAAGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGaaca                                                              >  1:1251338/1‑150 (MQ=255)              aaTTTCGCCCGAGAAATCGCCCATTTAACCGACAAACCGACGCTGAAATAAGCATAAAGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGaaca                                                              <  1:829674/150‑1 (MQ=255)                  tCGCCCGAGAAATCGCCCATTTAACCGACAAACCGACGCTGAAATAAGCATAAAGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACgg                                                          <  2:818261/150‑1 (MQ=255)                  tCGCCCGAGAAATCGCCCATTTAACCGACAAACCGACGCTGAAATAAGCATAAAGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACgg                                                          <  2:1245419/150‑1 (MQ=255)                   cGCCCGAGAAATCGCCCATTTAACCGACAAACCGACGCTGAAATAAGCATAAAGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACACCCTATAATGCGCCACCACTGCCACGGAACAACGGc                                                         >  2:1198039/1‑150 (MQ=255)                    gCCCGAGAAATCGCCCATTTAACCGACAAACCGACGCTGAAATAAGCATAAAGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCa                                                        <  2:332353/150‑1 (MQ=255)                      ccGAGAAATCGCCCATTTAACCGACAAACCGACGCTGAAATAAGCATAAAGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCaaa                                                      >  2:714665/1‑150 (MQ=255)                      ccGAGAAATCGCCCATTTAACCGACAAACCGACGCTGAAATAAGCATAAAGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCaaa                                                      <  2:379085/150‑1 (MQ=255)                        gagaAATCGCCCAATTAACCGACAAACCGGCGCTGAAATAAGCATAAAGAATAAAAAATTCGAGTTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGTAATAAATCAATATAATGCGCCACCACTGACAGTGAACAACGTCAAaca                                                    >  2:59860/1‑150 (MQ=21)                             aTCGCCCATTTAACCGACAAACCGACGCTGAAATAAGCATAAAGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAACAcgccg                                               <  2:1038320/150‑1 (MQ=255)                               cGCCCATTTAACCGACAAACCGACGCTGAAATAAGCATAAAGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATCACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAACACgccgcc                                             >  2:516784/1‑150 (MQ=255)                               cGCCCATTTAACCGACAAACCGACGCTGAAATAAGCATAAAGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAACACgccgcc                                             >  2:1067847/1‑150 (MQ=255)                                  ccATTTAACCGACAAACCGACGCTGAAATAAGCATAAAGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAACACGCCGCCggg                                          <  1:1339669/150‑1 (MQ=255)                                  ccATTTAACCGACAAACCGACGCTGAAATAAGCATAAAGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAACACGCCGCCggg                                          <  1:216936/150‑1 (MQ=255)                                   cATTTAACCGACAAACCGACGCTGAAATAAGCATAAAGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAACACGCCGCCGGGt                                         <  1:1067847/150‑1 (MQ=255)                                       tAACCGACAAACCGACGCTGAAATAAGCATAAAGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGCCACGGAACAACGGCAAACACGCCGCCGGGTCAGc                                     >  2:453943/1‑150 (MQ=255)                                        aaCCGACAAACCGACGCTGAAATAAGCATAAAGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCg                                    <  2:762137/150‑1 (MQ=255)                                                 aCCGACGCTGAAATAACCATAAAGAATAAAAAATCCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTcc                           <  1:333954/150‑1 (MQ=255)                                                   cgacgaTGAAATAAGCATAAATAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATATGTCCATATAATGCGCCACCTCTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTtctcagg                         <  2:472371/150‑4 (MQ=14)                                                        cTGAAATAAGCATAAAGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGTGGTTCTCCTGAGAAc                    >  2:1002788/1‑150 (MQ=255)                                                        cTGAAATAAGCATAAAGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAAc                    <  2:730003/150‑1 (MQ=255)                                                         tGAAATAAGCATAAAGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACt                   >  1:1227656/1‑150 (MQ=255)                                                          gAAATAAGCATAAAGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTc                  >  2:709301/1‑150 (MQ=255)                                                              aaaGCATAAACAATAAAAAATGCCCCGTCAGAAAAATATTATACACTACCTCATGTCAGGCCGGAATAACTCCCTAAAATGCCCCACCACTCACACGGACCAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGc              <  1:179180/149‑1 (MQ=11)                                                                aGCATAAAGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCag            <  2:1091288/150‑1 (MQ=39)                                                                    tAAAGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGaa        >  1:1029888/1‑150 (MQ=35)                                                                      aaGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAg      <  1:928/150‑1 (MQ=34)                                                                      aaGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAACACGCCGACGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAg      >  2:627185/1‑150 (MQ=21)                                                                       aGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGc     <  1:849318/150‑1 (MQ=33)                                                                        gAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCa    >  2:1052323/1‑150 (MQ=32)                                                                          aTAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCCCCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAGCTCCGGCAGAGAAAGCaaa  >  1:894115/1‑150 (MQ=14)                                                                          aTAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCaaa  >  2:605745/1‑150 (MQ=31)                                                                                                                                                      |                                                                          GGAGCAGGTGGCGAATTTCGCCCGAGAAATCGCCCATTTAACCGACAAACCGACGCTGAAATAAGCATAAAGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAA  >  NC_000913/4035090‑4035312

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.