| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,270,143 | C→T | 16.7% | intergenic (+541/+73) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,270,143 | 0 | C | T | 16.7% | 29.7 / 2.6 | 26 | intergenic (+541/+73) | yhaC/rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| Reads supporting (aligned to +/- strand): ref base C (14/6); new base T (2/2); total (18/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.78e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.66e-01 | |||||||||||
GCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTC > NC_000913/3270012‑3270289 | gCTTTCTTTTGTTTTTTGTGTCGTGGAATGCGTTTTATATTTCTGCCACTCCAAAAGCATAAACCCGCCGTAGCGGTTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGtcattca < 1:976248/150‑1 (MQ=11) ttttttaGTGTCGTGGACTGTCTTTATTCTAACGGGCACTCAAAAATCAAAAACCCGCCGCATCGGGTTTTTACGTAAACCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGcc < 1:1339091/145‑1 (MQ=11) cattcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGCCAGGCATTCATCGTTAAGCGCCTACAAAAACAAAAACccgc > 1:334846/1‑150 (MQ=11) cattcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGAAAGTCCTTAATCGTTTAGCCCCGCCAAAACCCAAAAAccgc > 1:1338272/1‑150 (MQ=11) attcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGGTTTCTTTTGGGTATAGCGTCGTGTAAAGTCATTCATATTTAAACACCAACAAAAACAAAAACccgga > 2:744199/1‑148 (MQ=11) catCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTAGGGTAAAGAGTAGTGTAAAGTCAATCAAAATTGAACACGAACAAAAGCAAAAACccgcagca > 2:1243835/1‑146 (MQ=11) ttCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGCCCGATAAGCCGCGTTCTTTTGGTTATAGCGTCGTGGCCCGGCCTTCAACGTAGTCCGCCACCAACAGCCAACACCCGCCGaccgcgg > 2:851757/1‑144 (MQ=11) tGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTGGGGTATAGCGTCGTGGAGAGTCCTTCAAGATTGTGCGCGAGCAAACGCCAAAACCCGCAGAAGggggggt > 1:835093/1‑147 (MQ=11) cagaaaCCCGCCCCATCGGGTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAgg < 1:724815/147‑1 (MQ=11) cAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATATTTCAGCACCGCCAAAAGCAAAAACCCGCCGCAGCGCGGTTTTACGTAAATGAgg > 2:385400/1‑150 (MQ=11) cgccgAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGGCAATAATCTTTCTGCCCCTCCAAAAACAAAAACCCGCCGAAGCGGGTTTTTAAGTTAATCATGTGAAACTg > 1:998657/1‑150 (MQ=11) gAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGAGTCGTGGACAGTCAATCATCTTTAAGCCCCTACAAAAACAAAAACCCGCAGAAGAGGGGTTTTAAGTTAATCAGGTGCAACttaacc > 1:701178/1‑145 (MQ=11) tACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTAGGGTATAGCGTCGTGGCCAGTCAATCATAATTATCCACCACCAAAAGCAAAAACCCGCCGAAACGCGGTTTTACGTTAATAAGGTGAAACTTCCCCATAAGCCGGGtt > 2:295461/1‑150 (MQ=14) cGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTAAACTTTCAGCCCCTCCAAAAGCAAAAACCCGCCGAAGCCGGGTTTTAAGTAAATCAGGGGCAACTGACAGATAAACCGGGTTCt > 2:984514/1‑150 (MQ=14) aGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGCTAAGCCGGGTTCTGTCGTGGTCAGTCATTCATCTAGGcc > 2:803485/1‑150 (MQ=255) gCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGt > 1:732292/1‑125 (MQ=21) gCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGt < 2:732292/125‑1 (MQ=21) ccGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTAATATTTATGCCCCTCCAAAAGCAAAAACCAGCCGCAGCGGGTTTTTACGTAAATAAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAg > 1:1130885/1‑150 (MQ=18) cGCTTTCTTTTGGGTCTAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGc < 1:452792/150‑1 (MQ=255) cGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGGTTTTACGGAAATCAGGTGAAACTGACCGAAAAGCCGGGTTCTGTAGTGGACAGTCATTCATCTAGGCCAGc > 1:1291514/1‑150 (MQ=255) gCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCggg < 2:572936/116‑1 (MQ=14) gCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGAAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCggg > 1:572936/1‑116 (MQ=9) ttGGGTCTAGCGTCGTGTTAAGTGATTCATCCTTCTGACCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCa < 1:249640/150‑1 (MQ=21) taGCGTCGTGGACAGTCATTCATCTTTCTGACCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGGGGACAGTGATTCATCTTGGCCAGCAATCGCTCACTGGCTc > 1:76377/1‑150 (MQ=255) gCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCg < 1:73376/97‑1 (MQ=35) gCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCg > 2:73376/1‑97 (MQ=35) | GCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTC > NC_000913/3270012‑3270289 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |