mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 40.3% | 35.4 / 72.9 | 67 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 1091 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1468681 | NA (NA) | 42 (0.870) +44 bp |
11/198 | 3.0 | NA | noncoding (560/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 1650843 = | NA (NA) | noncoding (1/706 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 224374 | NA (NA) | 17 (0.260) | 16/272 | 3.1 | NA | noncoding (604/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 224403 | NA (NA) | noncoding (633/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 1469243 | NA (NA) | 11 (0.240) +48 bp |
7/190 | 4.0 | 12.5% | pseudogene (3/53 nt) | ydbA | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| ? | NC_000913 | = 2997780 | 116 (1.670) | pseudogene (1049/1137 nt) | ygeQ | pseudogene, glycosyl hydrolase family 15, part of T3SS PAI ETT2 remnant | |||||
| * | ? | NC_000913 | = 228108 | NA (NA) | 12 (0.180) | 11/278 | 4.3 | NA | noncoding (2350/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 228124 | NA (NA) | noncoding (2366/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 4534130 = | 81 (1.170) | 11 (0.170) | 10/266 | 4.4 | 12.1% | intergenic (‑77/+300) | yjhX/yjhZ | UPF0386 family protein/pseudogene, rimK paralog, C‑terminal fragment |
| ? | NC_000913 | 4534171 = | 85 (1.320) | intergenic (‑118/+259) | yjhX/yjhZ | UPF0386 family protein/pseudogene, rimK paralog, C‑terminal fragment | |||||
| * | ? | NC_000913 | = 3875903 | 113 (1.630) | 10 (0.150) | 10/270 | 4.4 | 8.6% | coding (466/657 nt) | yidX | putative lipoprotein |
| ? | NC_000913 | = 3875916 | 105 (1.600) | coding (479/657 nt) | yidX | putative lipoprotein | |||||
| * | ? | NC_000913 | = 2700568 | 82 (1.180) | 9 (0.150) | 9/248 | 4.4 | 11.5% | noncoding (49/77 nt) | ohsC | sRNA antisense regulator of shoB toxin |
| ? | NC_000913 | = 2700581 | 67 (1.110) | noncoding (62/77 nt) | ohsC | sRNA antisense regulator of shoB toxin | |||||
| * | ? | NC_000913 | = 385205 | 102 (1.470) | 14 (0.210) | 10/270 | 4.4 | 13.0% | intergenic (‑589/‑27) | yaiS/tauA | putative PIG‑L family deacetylase/taurine ABC transporter periplasmic binding protein |
| ? | NC_000913 | = 385217 | 92 (1.400) | intergenic (‑601/‑15) | yaiS/tauA | putative PIG‑L family deacetylase/taurine ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 274620 = | NA (NA) | 13 (0.200) | 10/268 | 4.4 | NA | noncoding (530/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274663 = | NA (NA) | noncoding (487/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 3946053 | 2 (0.030) | 11 (0.160) | 10/278 | 4.5 | 85.0% | noncoding (2350/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | NC_000913 | = 3946069 | NA (NA) | noncoding (2366/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon | |||||